Package evaluation of HmtFacsimileBuilders on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T13:30:38.466 ################################################################################ # Set-up # Set-up completed after 0.27s ################################################################################ # Installation # Installing HmtFacsimileBuilders... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [51afb9e0] + HmtFacsimileBuilders v0.1.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [79e6a3ab] + Adapt v4.3.0 ⌅ [330c8319] + AtticGreek v0.7.4 ⌅ [336ed68f] + CSV v0.9.11 [324d7699] + CategoricalArrays v0.10.8 ⌃ [d6f014bd] + CitableBase v10.2.1 ⌃ [7b95b006] + CitableCollection v0.4.2 ⌅ [cf5ac11a] + CitableCorpus v0.12.3 ⌅ [17ccb2e5] + CitableImage v0.4.5 ⌅ [e2b2f5ea] + CitableObject v0.11.5 ⌅ [c834cb9d] + CitableParserBuilder v0.21.3 ⌅ [e38a874e] + CitablePhysicalText v0.7.0 ⌅ [b4325aa9] + CitableTeiReaders v0.8.4 ⌅ [41e66566] + CitableText v0.14.3 ⌅ [e2e9ead3] + CiteEXchange v0.9.3 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.0.2 [34da2185] + Compat v4.16.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [e7dc6d0d] + DataValues v0.4.13 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] + Dictionaries v0.4.5 ⌅ [ffbed154] + DocStringExtensions v0.8.6 ⌅ [e30172f5] + Documenter v0.27.25 ⌅ [2fb66cca] + EditionBuilders v0.7.0 ⌅ [3fa2051c] + EditorsRepo v0.16.3 [8f5d6c58] + EzXML v1.2.1 [48062228] + FilePathsBase v0.9.24 [da1fdf0e] + FreqTables v0.4.6 ⌅ [cd3eb016] + HTTP v0.9.17 ⌅ [1e7b0059] + HmtArchive v0.5.3 [51afb9e0] + HmtFacsimileBuilders v0.1.0 [b5f81e59] + IOCapture v0.2.5 [313cdc1a] + Indexing v1.1.1 [83e8ac13] + IniFile v0.5.1 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [1c8ee90f] + IterableTables v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 ⌃ [7c215dd3] + Lycian v0.5.5 [1914dd2f] + MacroTools v0.5.16 ⌅ [c7d01213] + ManuscriptOrthography v0.2.3 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [86f7a689] + NamedArrays v0.10.3 [bac558e1] + OrderedCollections v1.8.0 ⌅ [0b4c9448] + Orthography v0.16.3 [69de0a69] + Parsers v2.8.3 ⌅ [72b824a7] + PolytonicGreek v0.13.4 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [1a8c2f83] + Query v1.0.0 [2aef5ad7] + QueryOperators v0.9.3 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [91c51154] + SentinelArrays v1.4.8 [a2af1166] + SortingAlgorithms v1.2.1 [03a91e81] + SplitApplyCombine v1.2.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [892a3eda] + StringManipulation v0.4.1 [5e66a065] + TableShowUtils v0.2.6 [3783bdb8] + TableTraits v1.0.1 [382cd787] + TableTraitsUtils v1.0.2 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95f2ec] + TypedTables v1.4.6 [5c2747f8] + URIs v1.5.2 [ea10d353] + WeakRefStrings v1.4.2 ⌅ [a5390f91] + ZipFile v0.9.4 [94ce4f54] + Libiconv_jll v1.18.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 7.35s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 13830.9 ms ✓ CSV 9858.3 ms ✓ CitableText 4328.6 ms ✓ CitableImage 10969.0 ms ✓ CitableCorpus 10568.5 ms ? CitableCollection 3811.0 ms ? CitablePhysicalText 6151.3 ms ✓ EditionBuilders 8325.7 ms ✓ Orthography 4898.2 ms ✓ CitableTeiReaders 8357.7 ms ✓ PolytonicGreek 3596.5 ms ? CitableParserBuilder 8404.1 ms ✓ AtticGreek 8084.2 ms ✓ ManuscriptOrthography 11422.2 ms ? Lycian ✗ EditorsRepo 4187.1 ms ? HmtArchive 3788.4 ms ? HmtFacsimileBuilders 10 dependencies successfully precompiled in 149 seconds. 106 already precompiled. 6 dependencies failed but may be precompilable after restarting julia 6 dependencies had output during precompilation: ┌ CitablePhysicalText │ WARNING: Method definition hassubref(AbstractString) in module CitableText at /home/pkgeval/.julia/packages/CitableText/rxo0z/src/subrefs.jl:12 overwritten in module CitableObject at /home/pkgeval/.julia/packages/CitableObject/NqaSt/src/subreferences.jl:6. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ CitableParserBuilder │ WARNING: Method definition hassubref(AbstractString) in module CitableObject at /home/pkgeval/.julia/packages/CitableObject/NqaSt/src/subreferences.jl:6 overwritten in module CitableText at /home/pkgeval/.julia/packages/CitableText/rxo0z/src/subrefs.jl:12. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ Lycian │ WARNING: Method definition hassubref(AbstractString) in module CitableObject at /home/pkgeval/.julia/packages/CitableObject/NqaSt/src/subreferences.jl:6 overwritten in module CitableText at /home/pkgeval/.julia/packages/CitableText/rxo0z/src/subrefs.jl:12. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ HmtFacsimileBuilders │ WARNING: Method definition hassubref(AbstractString) in module CitableText at /home/pkgeval/.julia/packages/CitableText/rxo0z/src/subrefs.jl:12 overwritten in module CitableObject at /home/pkgeval/.julia/packages/CitableObject/NqaSt/src/subreferences.jl:6. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ HmtArchive │ WARNING: Method definition hassubref(AbstractString) in module CitableText at /home/pkgeval/.julia/packages/CitableText/rxo0z/src/subrefs.jl:12 overwritten in module CitableObject at /home/pkgeval/.julia/packages/CitableObject/NqaSt/src/subreferences.jl:6. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ CitableCollection │ WARNING: Method definition hassubref(AbstractString) in module CitableObject at /home/pkgeval/.julia/packages/CitableObject/NqaSt/src/subreferences.jl:6 overwritten in module CitableText at /home/pkgeval/.julia/packages/CitableText/rxo0z/src/subrefs.jl:12. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 158.11s ################################################################################ # Loading # Loading HmtFacsimileBuilders... Precompiling packages... 3905.0 ms ? CitableCollection 3831.0 ms ? CitableParserBuilder 3854.2 ms ? CitablePhysicalText 11254.5 ms ? Lycian ✗ EditorsRepo 4104.7 ms ? HmtArchive Info Given HmtFacsimileBuilders was explicitly requested, output will be shown live  WARNING: Method definition hassubref(AbstractString) in module CitableText at /home/pkgeval/.julia/packages/CitableText/rxo0z/src/subrefs.jl:12 overwritten in module CitableObject at /home/pkgeval/.julia/packages/CitableObject/NqaSt/src/subreferences.jl:6. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 3946.0 ms ? HmtFacsimileBuilders 0 dependencies successfully precompiled in 45 seconds. 116 already precompiled. 6 dependencies failed but may be precompilable after restarting julia 6 dependencies had output during precompilation: ┌ CitablePhysicalText │ WARNING: Method definition hassubref(AbstractString) in module CitableText at /home/pkgeval/.julia/packages/CitableText/rxo0z/src/subrefs.jl:12 overwritten in module CitableObject at /home/pkgeval/.julia/packages/CitableObject/NqaSt/src/subreferences.jl:6. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ CitableParserBuilder │ WARNING: Method definition hassubref(AbstractString) in module CitableObject at /home/pkgeval/.julia/packages/CitableObject/NqaSt/src/subreferences.jl:6 overwritten in module CitableText at /home/pkgeval/.julia/packages/CitableText/rxo0z/src/subrefs.jl:12. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ Lycian │ WARNING: Method definition hassubref(AbstractString) in module CitableObject at /home/pkgeval/.julia/packages/CitableObject/NqaSt/src/subreferences.jl:6 overwritten in module CitableText at /home/pkgeval/.julia/packages/CitableText/rxo0z/src/subrefs.jl:12. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ HmtFacsimileBuilders │ [Output was shown above] └ ┌ HmtArchive │ WARNING: Method definition hassubref(AbstractString) in module CitableText at /home/pkgeval/.julia/packages/CitableText/rxo0z/src/subrefs.jl:12 overwritten in module CitableObject at /home/pkgeval/.julia/packages/CitableObject/NqaSt/src/subreferences.jl:6. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ CitableCollection │ WARNING: Method definition hassubref(AbstractString) in module CitableObject at /home/pkgeval/.julia/packages/CitableObject/NqaSt/src/subreferences.jl:6 overwritten in module CitableText at /home/pkgeval/.julia/packages/CitableText/rxo0z/src/subrefs.jl:12. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ WARNING: Method definition hassubref(AbstractString) in module CitableText at /home/pkgeval/.julia/packages/CitableText/rxo0z/src/subrefs.jl:12 overwritten in module CitableObject at /home/pkgeval/.julia/packages/CitableObject/NqaSt/src/subreferences.jl:6. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... 8095.7 ms ✓ CitableImage 1 dependency successfully precompiled in 8 seconds. 37 already precompiled. Precompiling packages... Info Given CitablePhysicalText was explicitly requested, output will be shown live  WARNING: Method definition hassubref(AbstractString) in module CitableText at /home/pkgeval/.julia/packages/CitableText/rxo0z/src/subrefs.jl:12 overwritten in module CitableObject at /home/pkgeval/.julia/packages/CitableObject/NqaSt/src/subreferences.jl:6. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 3799.7 ms ? CitablePhysicalText WARNING: Method definition hassubref(AbstractString) in module CitableText at /home/pkgeval/.julia/packages/CitableText/rxo0z/src/subrefs.jl:12 overwritten in module CitableObject at /home/pkgeval/.julia/packages/CitableObject/NqaSt/src/subreferences.jl:6. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... 13393.7 ms ✓ CSV 1 dependency successfully precompiled in 13 seconds. 28 already precompiled. ERROR: LoadError: InitError: TypeError: in typeassert, expected Tuple{Vector{UInt8}, Int64, Int64, Union{Nothing, String}}, got a value of type Nothing Stacktrace: [1] getsource(x::Any, buffer_in_memory::Bool) @ CSV ~/.julia/packages/CSV/9LsxT/src/utils.jl:295 [2] macro expansion @ ~/.julia/packages/CSV/9LsxT/src/context.jl:324 [inlined] [3] Context @ ./none:0 [inlined] [4] CSV.Context(source::CSV.Arg, header::CSV.Arg, normalizenames::CSV.Arg, datarow::CSV.Arg, skipto::CSV.Arg, footerskip::CSV.Arg, transpose::CSV.Arg, comment::CSV.Arg, ignoreemptyrows::CSV.Arg, ignoreemptylines::CSV.Arg, select::CSV.Arg, drop::CSV.Arg, limit::CSV.Arg, buffer_in_memory::CSV.Arg, threaded::CSV.Arg, ntasks::CSV.Arg, tasks::CSV.Arg, rows_to_check::CSV.Arg, lines_to_check::CSV.Arg, missingstrings::CSV.Arg, missingstring::CSV.Arg, delim::CSV.Arg, ignorerepeated::CSV.Arg, quoted::CSV.Arg, quotechar::CSV.Arg, openquotechar::CSV.Arg, closequotechar::CSV.Arg, escapechar::CSV.Arg, dateformat::CSV.Arg, dateformats::CSV.Arg, decimal::CSV.Arg, truestrings::CSV.Arg, falsestrings::CSV.Arg, type::CSV.Arg, types::CSV.Arg, typemap::CSV.Arg, pool::CSV.Arg, downcast::CSV.Arg, lazystrings::CSV.Arg, stringtype::CSV.Arg, strict::CSV.Arg, silencewarnings::CSV.Arg, maxwarnings::CSV.Arg, debug::CSV.Arg, parsingdebug::CSV.Arg, validate::CSV.Arg, streaming::CSV.Arg) @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:0 [5] CSV.Context(source::IOBuffer; header::Int64, normalizenames::Bool, datarow::Int64, skipto::Int64, footerskip::Int64, transpose::Bool, comment::Nothing, ignoreemptyrows::Bool, ignoreemptylines::Nothing, select::Nothing, drop::Nothing, limit::Nothing, buffer_in_memory::Bool, threaded::Nothing, ntasks::Nothing, tasks::Nothing, rows_to_check::Int64, lines_to_check::Nothing, missingstrings::Vector{String}, missingstring::String, delim::Nothing, ignorerepeated::Bool, quoted::Bool, quotechar::Char, openquotechar::Nothing, closequotechar::Nothing, escapechar::Char, dateformat::Nothing, dateformats::Nothing, decimal::UInt8, truestrings::Vector{String}, falsestrings::Vector{String}, type::Nothing, types::Nothing, typemap::Dict{Type, Type}, pool::Float64, downcast::Bool, lazystrings::Bool, stringtype::Type{InlineStrings.InlineString}, strict::Bool, silencewarnings::Bool, maxwarnings::Int64, debug::Bool, parsingdebug::Bool, validate::Bool) @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:199 [6] CSV.Context(source::IOBuffer) @ CSV ~/.julia/packages/CSV/9LsxT/src/context.jl:147 [7] __init__() @ CSV ~/.julia/packages/CSV/9LsxT/src/CSV.jl:98 [8] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1415 [9] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1403 [10] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1291 [11] _include_from_serialized @ ./loading.jl:1246 [inlined] [12] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2087 [13] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2599 [14] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [15] macro expansion @ ./loading.jl:2393 [inlined] [16] macro expansion @ ./lock.jl:376 [inlined] [17] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [18] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [19] top-level scope @ ~/.julia/packages/CitablePhysicalText/vkYNp/src/CitablePhysicalText.jl:25 [20] include(mod::Module, _path::String) @ Base ./Base.jl:303 [21] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2690 [22] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [23] macro expansion @ ./loading.jl:2393 [inlined] [24] macro expansion @ ./lock.jl:376 [inlined] [25] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [26] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [27] top-level scope @ ~/.julia/packages/HmtFacsimileBuilders/thydQ/src/HmtFacsimileBuilders.jl:8 [28] include(mod::Module, _path::String) @ Base ./Base.jl:303 [29] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2690 [30] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [31] macro expansion @ ./loading.jl:2393 [inlined] [32] macro expansion @ ./lock.jl:376 [inlined] [33] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [34] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [35] eval(m::Module, e::Any) @ Core ./boot.jl:489 [36] exec_options(opts::Base.JLOptions) @ Base ./client.jl:297 [37] _start() @ Base ./client.jl:563 during initialization of module CSV in expression starting at /home/pkgeval/.julia/packages/CitablePhysicalText/vkYNp/src/CitablePhysicalText.jl:1 in expression starting at /home/pkgeval/.julia/packages/HmtFacsimileBuilders/thydQ/src/HmtFacsimileBuilders.jl:1 Loading failed after 118.14s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using HmtFacsimileBuilders'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run(::Cmd) @ Base ./process.jl:514 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:303 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [7] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 304.28s: illegal method overwrites during precompilation