Package evaluation of GroupedTransforms on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T02:59:22.494 ################################################################################ # Set-up # Set-up completed after 0.22s ################################################################################ # Installation # Installing GroupedTransforms... Resolving package versions... Installed NFFT3 ─ v1.2.2 Updating `~/.julia/environments/v1.13/Project.toml` [76248ec8] + GroupedTransforms v1.2.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [4c88cf16] + Aqua v0.8.11 [0e736298] + Bessels v0.2.8 [861a8166] + Combinatorics v1.0.2 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [717857b8] + DSP v0.8.3 [ffbed154] + DocStringExtensions v0.9.4 [7a1cc6ca] + FFTW v1.8.1 [1a297f60] + FillArrays v1.13.0 [76248ec8] + GroupedTransforms v1.2.0 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.0 [7a12625a] + LinearMaps v3.11.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [53104703] + NFFT3 v1.2.2 [bac558e1] + OrderedCollections v1.8.0 [f27b6e38] + Polynomials v4.0.19 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [efcf1570] + Setfield v1.1.2 [276daf66] + SpecialFunctions v2.5.1 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [c751599d] + ToeplitzMatrices v0.8.5 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Building NFFT3 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/6f6817341af4862471a1393598486a2e21b51c13/build.log` Installation completed after 10.23s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... ✗ NFFT3 ✗ GroupedTransforms 0 dependencies successfully precompiled in 34 seconds. 76 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: GroupedTransforms Failed to precompile GroupedTransforms [76248ec8-aa36-4347-850f-ece2d673bc9f] to "/home/pkgeval/.julia/compiled/v1.13/GroupedTransforms/jl_TYeRc6" (ProcessExited(1)). ERROR: LoadError: could not load library "/home/pkgeval/.julia/packages/NFFT3/UdSCg/src/lib/AVX2/glibc2.40/libnfftjulia.so" libfftw3_threads.so.3: cannot open shared object file: No such file or directory Stacktrace: [1] top-level scope @ ~/.julia/packages/NFFT3/UdSCg/src/flags.jl:197 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [3] top-level scope @ ~/.julia/packages/NFFT3/UdSCg/src/NFFT3.jl:49 [4] include(mod::Module, _path::String) @ Base ./Base.jl:303 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [9] include_string @ ./loading.jl:2834 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [11] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/NFFT3/UdSCg/src/flags.jl:197 in expression starting at /home/pkgeval/.julia/packages/NFFT3/UdSCg/src/NFFT3.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile NFFT3 [53104703-03e8-40a5-ab01-812303a44cae] to "/home/pkgeval/.julia/compiled/v1.13/NFFT3/jl_lZcUsa" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] top-level scope @ ~/.julia/packages/GroupedTransforms/Zrs6i/src/NFFTtools.jl:4 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [20] top-level scope @ ~/.julia/packages/GroupedTransforms/Zrs6i/src/GroupedTransforms.jl:22 [21] include(mod::Module, _path::String) @ Base ./Base.jl:303 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2978 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [26] include_string @ ./loading.jl:2834 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [28] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/GroupedTransforms/Zrs6i/src/NFFTtools.jl:1 in expression starting at /home/pkgeval/.julia/packages/GroupedTransforms/Zrs6i/src/GroupedTransforms.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 45.44s ################################################################################ # Loading # Loading GroupedTransforms... Precompiling packages... ✗ NFFT3 Info Given GroupedTransforms was explicitly requested, output will be shown live  ERROR: LoadError: could not load library "/home/pkgeval/.julia/packages/NFFT3/UdSCg/src/lib/AVX2/glibc2.40/libnfftjulia.so" libfftw3_threads.so.3: cannot open shared object file: No such file or directory Stacktrace:  [1] top-level scope  @ ~/.julia/packages/NFFT3/UdSCg/src/flags.jl:197  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:304  [3] top-level scope  @ ~/.julia/packages/NFFT3/UdSCg/src/NFFT3.jl:49  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:303  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:2978  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2824  [9] include_string  @ ./loading.jl:2834 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:329  [11] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/NFFT3/UdSCg/src/flags.jl:197 in expression starting at /home/pkgeval/.julia/packages/NFFT3/UdSCg/src/NFFT3.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile NFFT3 [53104703-03e8-40a5-ab01-812303a44cae] to "/home/pkgeval/.julia/compiled/v1.13/NFFT3/jl_Dz79Sf" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3265  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2651  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})  @ Base ./reflection.jl:1279  [8] #invokelatest_gr#234  @ ./reflection.jl:1287 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1281 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3836  [11] maybe_cachefile_lock  @ ./loading.jl:3833 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2637  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2465  [14] macro expansion  @ ./loading.jl:2393 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2358  [17] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2334  [18] top-level scope  @ ~/.julia/packages/GroupedTransforms/Zrs6i/src/NFFTtools.jl:4  [19] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:304  [20] top-level scope  @ ~/.julia/packages/GroupedTransforms/Zrs6i/src/GroupedTransforms.jl:22  [21] include(mod::Module, _path::String)  @ Base ./Base.jl:303  [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2978  [23] top-level scope  @ stdin:5  [24] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2824  [26] include_string  @ ./loading.jl:2834 [inlined]  [27] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:329  [28] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/GroupedTransforms/Zrs6i/src/NFFTtools.jl:1 in expression starting at /home/pkgeval/.julia/packages/GroupedTransforms/Zrs6i/src/GroupedTransforms.jl:1 in expression starting at stdin:5 ✗ GroupedTransforms 0 dependencies successfully precompiled in 32 seconds. 76 already precompiled. ERROR: The following 1 direct dependency failed to precompile: GroupedTransforms Failed to precompile GroupedTransforms [76248ec8-aa36-4347-850f-ece2d673bc9f] to "/home/pkgeval/.julia/compiled/v1.13/GroupedTransforms/jl_d7Rnd4" (ProcessExited(1)). ERROR: LoadError: could not load library "/home/pkgeval/.julia/packages/NFFT3/UdSCg/src/lib/AVX2/glibc2.40/libnfftjulia.so" libfftw3_threads.so.3: cannot open shared object file: No such file or directory Stacktrace: [1] top-level scope @ ~/.julia/packages/NFFT3/UdSCg/src/flags.jl:197 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [3] top-level scope @ ~/.julia/packages/NFFT3/UdSCg/src/NFFT3.jl:49 [4] include(mod::Module, _path::String) @ Base ./Base.jl:303 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [9] include_string @ ./loading.jl:2834 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [11] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/NFFT3/UdSCg/src/flags.jl:197 in expression starting at /home/pkgeval/.julia/packages/NFFT3/UdSCg/src/NFFT3.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile NFFT3 [53104703-03e8-40a5-ab01-812303a44cae] to "/home/pkgeval/.julia/compiled/v1.13/NFFT3/jl_Dz79Sf" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] top-level scope @ ~/.julia/packages/GroupedTransforms/Zrs6i/src/NFFTtools.jl:4 [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [20] top-level scope @ ~/.julia/packages/GroupedTransforms/Zrs6i/src/GroupedTransforms.jl:22 [21] include(mod::Module, _path::String) @ Base ./Base.jl:303 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2978 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [26] include_string @ ./loading.jl:2834 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [28] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/GroupedTransforms/Zrs6i/src/NFFTtools.jl:1 in expression starting at /home/pkgeval/.julia/packages/GroupedTransforms/Zrs6i/src/GroupedTransforms.jl:1 in expression starting at stdin: Loading failed after 33.83s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using GroupedTransforms'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run(::Cmd) @ Base ./process.jl:514 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:303 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [7] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 113.25s: package requires a missing binary dependency