Package evaluation of GeometricIntegratorsDiffEq on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T09:06:01.089


################################################################################
# Set-up
#


Set-up completed after 0.23s


################################################################################
# Installation
#

Installing GeometricIntegratorsDiffEq...
   Resolving package versions...
   Installed FastTransforms ─ v0.17.0
   Installed HDF5 ─────────── v0.16.16
    Updating `~/.julia/environments/v1.13/Project.toml`
  [5a33fad7] + GeometricIntegratorsDiffEq v0.2.5
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [47edcb42] + ADTypes v1.14.0
  [a4c015fc] + ANSIColoredPrinters v0.0.1
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⌅ [4c88cf16] + Aqua v0.5.6
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  [2a0fbf3d] + CPUSummary v0.2.6
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  [bbf7d656] + CommonSubexpressions v0.3.1
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  [adafc99b] + CpuId v0.3.1
  [a8cc5b0e] + Crayons v4.1.1
⌃ [717857b8] + DSP v0.7.10
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
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  [55939f99] + DecFP v1.4.1
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  [2b5f629d] + DiffEqBase v6.170.1
  [163ba53b] + DiffResults v1.1.0
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  [a0c0ee7d] + DifferentiationInterface v0.6.52
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  [1a297f60] + FillArrays v1.13.0
  [6a86dc24] + FiniteDiff v2.27.0
⌅ [f6369f11] + ForwardDiff v0.10.38
  [069b7b12] + FunctionWrappers v1.1.3
  [77dc65aa] + FunctionWrappersWrappers v0.1.3
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  [14197337] + GenericLinearAlgebra v0.3.17
⌅ [9a0b12b7] + GeometricBase v0.2.6
⌅ [c85262ba] + GeometricEquations v0.2.1
⌅ [dcce2d33] + GeometricIntegrators v0.9.2
  [5a33fad7] + GeometricIntegratorsDiffEq v0.2.5
⌅ [f67ccb44] + HDF5 v0.16.16
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  [46d2c3a1] + MuladdMacro v0.2.4
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⌅ [f27b6e38] + Polynomials v3.2.13
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  [21216c6a] + Preferences v1.4.3
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  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
⌅ [fb486d5c] + RungeKutta v0.4.6
  [7e49a35a] + RuntimeGeneratedFunctions v0.5.14
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⌅ [36b790f5] + SimpleSolvers v0.2.4
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  [0234f1f7] + HDF5_jll v1.14.6+0
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        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
    Building HDF5 ──────────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/114e20044677badbc631ee6fdc80a67920561a29/build.log`
    Building FastTransforms → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b41969ccec1379b33967c9b720a250d4687cfc2d/build.log`

Installation completed after 20.68s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
  67397.6 ms  ✓ SimpleSolvers
  46902.7 ms  ✓ CompactBasisFunctions
  79888.3 ms  ✓ RungeKutta
           ✗ GeometricIntegrators
           ✗ GeometricIntegratorsDiffEq
  3 dependencies successfully precompiled in 245 seconds. 245 already precompiled.
  1 dependency had output during precompilation:
┌ SimpleSolvers
│  WARNING: method definition for #Hessian#20 at /home/pkgeval/.julia/packages/SimpleSolvers/ZneAL/src/base/hessian.jl:92 declares type variable T but does not use it.
│  WARNING: method definition for #Hessian#21 at /home/pkgeval/.julia/packages/SimpleSolvers/ZneAL/src/base/hessian.jl:94 declares type variable T but does not use it.
└  

ERROR: LoadError: The following 1 direct dependency failed to precompile:

GeometricIntegratorsDiffEq 

Failed to precompile GeometricIntegratorsDiffEq [5a33fad7-5ce4-5983-9f5d-5f26ceab5c96] to "/home/pkgeval/.julia/compiled/v1.13/GeometricIntegratorsDiffEq/jl_pTEJoL" (ProcessExited(1)).
ERROR: LoadError: ArgumentError: invalid type for argument sol in method definition for copy_solution! at /home/pkgeval/.julia/packages/GeometricIntegrators/Yo3w3/src/solutions/atomic_solution.jl:32
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/GeometricIntegrators/Yo3w3/src/solutions/atomic_solution.jl:23
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
  [3] top-level scope
    @ ~/.julia/packages/GeometricIntegrators/Yo3w3/src/Solutions.jl:30
  [4] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
  [5] top-level scope
    @ ~/.julia/packages/GeometricIntegrators/Yo3w3/src/GeometricIntegrators.jl:11
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2978
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [11] include_string
    @ ./loading.jl:2834 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [13] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/GeometricIntegrators/Yo3w3/src/solutions/atomic_solution.jl:23
in expression starting at /home/pkgeval/.julia/packages/GeometricIntegrators/Yo3w3/src/Solutions.jl:1
in expression starting at /home/pkgeval/.julia/packages/GeometricIntegrators/Yo3w3/src/GeometricIntegrators.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile GeometricIntegrators [dcce2d33-59f6-5b8d-9047-0defad88ae06] to "/home/pkgeval/.julia/compiled/v1.13/GeometricIntegrators/jl_ViZeXj" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/GeometricIntegratorsDiffEq/04Cru/src/GeometricIntegratorsDiffEq.jl:6
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/GeometricIntegratorsDiffEq/04Cru/src/GeometricIntegratorsDiffEq.jl:1
in expression starting at stdin:
in expression starting at /PkgEval.jl/scripts/precompile.jl:37

Precompilation failed after 256.95s



################################################################################
# Loading
#

Loading GeometricIntegratorsDiffEq...
Precompiling packages...
           ✗ GeometricIntegrators
Info Given GeometricIntegratorsDiffEq was explicitly requested, output will be shown live 
ERROR: LoadError: ArgumentError: invalid type for argument sol in method definition for copy_solution! at /home/pkgeval/.julia/packages/GeometricIntegrators/Yo3w3/src/solutions/atomic_solution.jl:32
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/GeometricIntegrators/Yo3w3/src/solutions/atomic_solution.jl:23
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
  [3] top-level scope
    @ ~/.julia/packages/GeometricIntegrators/Yo3w3/src/Solutions.jl:30
  [4] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
  [5] top-level scope
    @ ~/.julia/packages/GeometricIntegrators/Yo3w3/src/GeometricIntegrators.jl:11
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2978
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [11] include_string
    @ ./loading.jl:2834 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [13] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/GeometricIntegrators/Yo3w3/src/solutions/atomic_solution.jl:23
in expression starting at /home/pkgeval/.julia/packages/GeometricIntegrators/Yo3w3/src/Solutions.jl:1
in expression starting at /home/pkgeval/.julia/packages/GeometricIntegrators/Yo3w3/src/GeometricIntegrators.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile GeometricIntegrators [dcce2d33-59f6-5b8d-9047-0defad88ae06] to "/home/pkgeval/.julia/compiled/v1.13/GeometricIntegrators/jl_gkgcDJ" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/GeometricIntegratorsDiffEq/04Cru/src/GeometricIntegratorsDiffEq.jl:6
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/GeometricIntegratorsDiffEq/04Cru/src/GeometricIntegratorsDiffEq.jl:1
in expression starting at stdin:5
           ✗ GeometricIntegratorsDiffEq
  0 dependencies successfully precompiled in 34 seconds. 248 already precompiled.

ERROR: The following 1 direct dependency failed to precompile:

GeometricIntegratorsDiffEq 

Failed to precompile GeometricIntegratorsDiffEq [5a33fad7-5ce4-5983-9f5d-5f26ceab5c96] to "/home/pkgeval/.julia/compiled/v1.13/GeometricIntegratorsDiffEq/jl_Cx23xW" (ProcessExited(1)).
ERROR: LoadError: ArgumentError: invalid type for argument sol in method definition for copy_solution! at /home/pkgeval/.julia/packages/GeometricIntegrators/Yo3w3/src/solutions/atomic_solution.jl:32
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/GeometricIntegrators/Yo3w3/src/solutions/atomic_solution.jl:23
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
  [3] top-level scope
    @ ~/.julia/packages/GeometricIntegrators/Yo3w3/src/Solutions.jl:30
  [4] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
  [5] top-level scope
    @ ~/.julia/packages/GeometricIntegrators/Yo3w3/src/GeometricIntegrators.jl:11
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2978
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [11] include_string
    @ ./loading.jl:2834 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [13] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/GeometricIntegrators/Yo3w3/src/solutions/atomic_solution.jl:23
in expression starting at /home/pkgeval/.julia/packages/GeometricIntegrators/Yo3w3/src/Solutions.jl:1
in expression starting at /home/pkgeval/.julia/packages/GeometricIntegrators/Yo3w3/src/GeometricIntegrators.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile GeometricIntegrators [dcce2d33-59f6-5b8d-9047-0defad88ae06] to "/home/pkgeval/.julia/compiled/v1.13/GeometricIntegrators/jl_gkgcDJ" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/GeometricIntegratorsDiffEq/04Cru/src/GeometricIntegratorsDiffEq.jl:6
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/GeometricIntegratorsDiffEq/04Cru/src/GeometricIntegratorsDiffEq.jl:1
in expression starting at stdin:

Loading failed after 36.43s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using GeometricIntegratorsDiffEq'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:602 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:517
 [3] run(::Cmd)
   @ Base ./process.jl:514
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:303
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:331
 [7] _start()
   @ Base ./client.jl:563
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 339.27s: package fails to precompile