Package evaluation of GaussianMarkovRandomFields on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T08:59:18.730 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.3s ################################################################################ # Installation # Installing GaussianMarkovRandomFields... Resolving package versions... Installed Preconditioners ─ v0.6.1 Updating `~/.julia/environments/v1.13/Project.toml` [d5f06795] + GaussianMarkovRandomFields v0.2.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [14f7f29c] + AMD v0.5.3 ⌅ [2169fc97] + AlgebraicMultigrid v0.5.1 [66dad0bd] + AliasTables v1.1.3 [fa961155] + CEnum v0.5.0 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [411431e0] + Extents v0.1.5 [c061ca5d] + Ferrite v1.0.0 [4f95f4f8] + FerriteGmsh v1.2.1 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [f6369f11] + ForwardDiff v0.10.38 [d5f06795] + GaussianMarkovRandomFields v0.2.0 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 [0edc0954] + GeoInterfaceMakie v0.1.9 [0329782f] + GeoInterfaceRecipes v1.0.2 ⌅ [5c1252a2] + GeometryBasics v0.4.11 [705231aa] + Gmsh v0.3.1 [34004b35] + HypergeometricFunctions v0.3.28 [8197267c] + IntervalSets v0.7.11 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [a90b1aa1] + LibGEOS v0.9.4 [9c8b4983] + LightXML v0.9.1 [f5a24dde] + LimitedLDLFactorizations v0.5.1 [7a12625a] + LinearMaps v3.11.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 ⌃ [20f20a25] + MakieCore v0.8.12 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.21 [510215fc] + Observables v0.5.5 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.34 [aea7be01] + PrecompileTools v1.3.2 [af69fa37] + Preconditioners v0.6.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [fdea26ae] + SIMD v3.7.1 [043bf095] + SelectedInversion v0.1.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.5.0 ⌅ [09ab397b] + StructArrays v0.6.21 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [48a634ad] + Tensors v1.16.2 [3bb67fe8] + TranscodingStreams v0.11.3 [4004b06d] + VTKBase v1.0.1 [64499a7a] + WriteVTK v1.21.2 [6e34b625] + Bzip2_jll v1.0.9+0 [83423d85] + Cairo_jll v1.18.5+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.6.5+0 [4fce6fc7] + FLTK_jll v1.3.8+0 [a3f928ae] + Fontconfig_jll v2.16.0+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [d604d12d] + GEOS_jll v3.13.1+1 [bd17208b] + GLU_jll v9.0.1+0 [78b55507] + Gettext_jll v0.21.0+0 [7746bdde] + Glib_jll v2.84.0+0 ⌅ [0234f1f7] + HDF5_jll v1.14.3+3 [e33a78d0] + Hwloc_jll v2.12.0+0 [aacddb02] + JpegTurbo_jll v3.1.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.0+0 [38a345b3] + Libuuid_jll v2.41.0+0 [18c40d15] + LinearElasticity_jll v5.0.0+0 [d00139f3] + METIS_jll v5.1.3+0 [86086c02] + MMG_jll v5.6.0+0 [7cb0a576] + MPICH_jll v4.3.0+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [baad4e97] + OCCT_jll v7.7.2+0 ⌅ [fe0851c0] + OpenMPI_jll v4.1.8+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [a8d0f55d] + SCOTCH_jll v6.1.3+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.1+0 [2c808117] + Xorg_libXft_jll v2.3.3+1 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [630162c2] + gmsh_jll v4.13.1+0 [477f73a3] + libaec_jll v1.1.3+0 [b53b4c65] + libpng_jll v1.6.47+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building Preconditioners → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/a02fc23058e6264b0f73523e99e2dd1a20232dff/build.log` Installation completed after 12.63s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 3 direct dependencies failed to precompile: GaussianMarkovRandomFieldsAutoDiff Failed to precompile GaussianMarkovRandomFieldsAutoDiff [7a19c69e-20f1-54d6-8aa2-e06a45bb4cc6] to "/home/pkgeval/.julia/compiled/v1.13/GaussianMarkovRandomFieldsAutoDiff/jl_vujSGR" (ProcessExited(1)). WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions. NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Variable end`. Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. WARNING: Imported binding InteractiveUtils.typesof was undeclared at import time during import to Zygote. ERROR: LoadError: UndefVarError: `typesof` not defined in `Zygote` Suggestion: this global was defined as `InteractiveUtils.typesof` but not assigned a value. Stacktrace: [1] top-level scope @ ~/.julia/packages/Zygote/1GK3J/src/precompile.jl:13 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [3] IncludeInto @ ./Base.jl:305 [inlined] [4] macro expansion @ ~/.julia/packages/Requires/1eCOK/src/Requires.jl:40 [inlined] [5] precompile() @ Zygote ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:63 [6] top-level scope @ ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:84 [7] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [8] include(mod::Module, _path::String) @ Base ./Base.jl:303 [9] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [10] top-level scope @ stdin:5 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [13] include_string @ ./loading.jl:2834 [inlined] [14] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [15] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/precompile.jl:13 in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/Zygote.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.13/Zygote/jl_DTwpOg" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] top-level scope @ ~/.julia/packages/GaussianMarkovRandomFields/rdm1Y/ext/GaussianMarkovRandomFieldsAutoDiff.jl:4 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2978 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [24] include_string @ ./loading.jl:2834 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/GaussianMarkovRandomFields/rdm1Y/ext/GaussianMarkovRandomFieldsAutoDiff.jl:1 in expression starting at stdin:5 Zygote Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.13/Zygote/jl_ENk7Ee" (ProcessExited(1)). WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions. NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Variable end`. Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. WARNING: Imported binding InteractiveUtils.typesof was undeclared at import time during import to Zygote. ERROR: LoadError: UndefVarError: `typesof` not defined in `Zygote` Suggestion: this global was defined as `InteractiveUtils.typesof` but not assigned a value. Stacktrace: [1] top-level scope @ ~/.julia/packages/Zygote/1GK3J/src/precompile.jl:13 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [3] IncludeInto @ ./Base.jl:305 [inlined] [4] macro expansion @ ~/.julia/packages/Requires/1eCOK/src/Requires.jl:40 [inlined] [5] precompile() @ Zygote ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:63 [6] top-level scope @ ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:84 [7] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [8] include(mod::Module, _path::String) @ Base ./Base.jl:303 [9] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2978 [10] top-level scope @ stdin:5 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [13] include_string @ ./loading.jl:2834 [inlined] [14] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [15] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/precompile.jl:13 in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/Zygote.jl:1 in expression starting at stdin:5 ZygoteDistancesExt Failed to precompile ZygoteDistancesExt [5865c103-18d1-586a-9b11-010bbc2260a8] to "/home/pkgeval/.julia/compiled/v1.13/ZygoteDistancesExt/jl_PNt8vq" (ProcessExited(1)). WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions. NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Variable end`. Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. WARNING: Imported binding InteractiveUtils.typesof was undeclared at import time during import to Zygote. ERROR: LoadError: UndefVarError: `typesof` not defined in `Zygote` Suggestion: this global was defined as `InteractiveUtils.typesof` but not assigned a value. Stacktrace: [1] top-level scope @ ~/.julia/packages/Zygote/1GK3J/src/precompile.jl:13 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [3] IncludeInto @ ./Base.jl:305 [inlined] [4] macro expansion @ ~/.julia/packages/Requires/1eCOK/src/Requires.jl:40 [inlined] [5] precompile() @ Zygote ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:63 [6] top-level scope @ ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:84 [7] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [8] include(mod::Module, _path::String) @ Base ./Base.jl:303 [9] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [10] top-level scope @ stdin:5 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [13] include_string @ ./loading.jl:2834 [inlined] [14] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [15] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/precompile.jl:13 in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/Zygote.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.13/Zygote/jl_CMcS3V" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] top-level scope @ ~/.julia/packages/Zygote/1GK3J/ext/ZygoteDistancesExt.jl:4 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2978 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [24] include_string @ ./loading.jl:2834 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/ext/ZygoteDistancesExt.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 260.14s ################################################################################ # Testing # Testing GaussianMarkovRandomFields Status `/tmp/jl_A6ajj4/Project.toml` [14f7f29c] AMD v0.5.3 [4c88cf16] Aqua v0.8.11 [31c24e10] Distributions v0.25.119 [c061ca5d] Ferrite v1.0.0 [4f95f4f8] FerriteGmsh v1.2.1 ⌅ [f6369f11] ForwardDiff v0.10.38 [d5f06795] GaussianMarkovRandomFields v0.2.0 [cf35fbd7] GeoInterface v1.4.1 ⌅ [5c1252a2] GeometryBasics v0.4.11 [705231aa] Gmsh v0.3.1 [42fd0dbc] IterativeSolvers v0.9.4 [a90b1aa1] LibGEOS v0.9.4 [7a12625a] LinearMaps v3.11.4 [af69fa37] Preconditioners v0.6.1 [e0db7c4e] ReTest v0.3.4 [043bf095] SelectedInversion v0.1.0 [276daf66] SpecialFunctions v2.5.1 [48a634ad] Tensors v1.16.2 ⌅ [e88e6eb3] Zygote v0.6.76 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_A6ajj4/Manifest.toml` [14f7f29c] AMD v0.5.3 [621f4979] AbstractFFTs v1.5.0 [79e6a3ab] Adapt v4.3.0 ⌅ [2169fc97] AlgebraicMultigrid v0.5.1 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.11 [a9b6321e] Atomix v1.1.1 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.3 [d360d2e6] ChainRulesCore v1.25.1 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.119 [ffbed154] DocStringExtensions v0.9.4 [4e289a0a] EnumX v1.0.5 [411431e0] Extents v0.1.5 [c061ca5d] Ferrite v1.0.0 [4f95f4f8] FerriteGmsh v1.2.1 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 ⌅ [f6369f11] ForwardDiff v0.10.38 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [d5f06795] GaussianMarkovRandomFields v0.2.0 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 [0edc0954] GeoInterfaceMakie v0.1.9 [0329782f] GeoInterfaceRecipes v1.0.2 ⌅ [5c1252a2] GeometryBasics v0.4.11 [705231aa] Gmsh v0.3.1 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [7869d1d1] IRTools v0.4.14 [bd334432] InlineTest v0.2.0 [8197267c] IntervalSets v0.7.11 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [63c18a36] KernelAbstractions v0.9.34 [929cbde3] LLVM v9.3.1 [a90b1aa1] LibGEOS v0.9.4 [9c8b4983] LightXML v0.9.1 [f5a24dde] LimitedLDLFactorizations v0.5.1 [7a12625a] LinearMaps v3.11.4 [2ab3a3ac] LogExpFunctions v0.3.29 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 ⌃ [20f20a25] MakieCore v0.8.12 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.21 [510215fc] Observables v0.5.5 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.34 [aea7be01] PrecompileTools v1.3.2 [af69fa37] Preconditioners v0.6.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [e0db7c4e] ReTest v0.3.4 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [fdea26ae] SIMD v3.7.1 [7e506255] ScopedValues v1.3.0 [043bf095] SelectedInversion v0.1.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.5.0 ⌅ [09ab397b] StructArrays v0.6.21 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [48a634ad] Tensors v1.16.2 [3bb67fe8] TranscodingStreams v0.11.3 [013be700] UnsafeAtomics v0.3.0 [4004b06d] VTKBase v1.0.1 [64499a7a] WriteVTK v1.21.2 ⌅ [e88e6eb3] Zygote v0.6.76 [700de1a5] ZygoteRules v0.2.7 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+0 [5ae413db] EarCut_jll v2.2.4+0 [2e619515] Expat_jll v2.6.5+0 [4fce6fc7] FLTK_jll v1.3.8+0 [a3f928ae] Fontconfig_jll v2.16.0+0 [d7e528f0] FreeType2_jll v2.13.4+0 [d604d12d] GEOS_jll v3.13.1+1 [bd17208b] GLU_jll v9.0.1+0 [78b55507] Gettext_jll v0.21.0+0 [7746bdde] Glib_jll v2.84.0+0 ⌅ [0234f1f7] HDF5_jll v1.14.3+3 [e33a78d0] Hwloc_jll v2.12.0+0 [aacddb02] JpegTurbo_jll v3.1.1+0 [dad2f222] LLVMExtra_jll v0.0.35+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.0+0 [38a345b3] Libuuid_jll v2.41.0+0 [18c40d15] LinearElasticity_jll v5.0.0+0 [d00139f3] METIS_jll v5.1.3+0 [86086c02] MMG_jll v5.6.0+0 [7cb0a576] MPICH_jll v4.3.0+1 [f1f71cc9] MPItrampoline_jll v5.5.3+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [baad4e97] OCCT_jll v7.7.2+0 ⌅ [fe0851c0] OpenMPI_jll v4.1.8+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [a8d0f55d] SCOTCH_jll v6.1.3+0 ⌅ [02c8fc9c] XML2_jll v2.13.6+1 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [d091e8ba] Xorg_libXfixes_jll v6.0.1+0 [2c808117] Xorg_libXft_jll v2.3.3+1 [d1454406] Xorg_libXinerama_jll v1.1.6+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [630162c2] gmsh_jll v4.13.1+0 [477f73a3] libaec_jll v1.1.3+0 [b53b4c65] libpng_jll v1.6.47+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 5114.8 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 7 seconds. 49 already precompiled. Precompiling packages... 3033.6 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 16872.4 ms ✓ GPUArrays Info Given Zygote was explicitly requested, output will be shown live  WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import.  NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Variable end`.  Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. WARNING: Imported binding InteractiveUtils.typesof was undeclared at import time during import to Zygote. ERROR: LoadError: UndefVarError: `typesof` not defined in `Zygote` Suggestion: this global was defined as `InteractiveUtils.typesof` but not assigned a value. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Zygote/1GK3J/src/precompile.jl:13  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:304  [3] IncludeInto  @ ./Base.jl:305 [inlined]  [4] macro expansion  @ ~/.julia/packages/Requires/1eCOK/src/Requires.jl:40 [inlined]  [5] precompile()  @ Zygote ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:63  [6] top-level scope  @ ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:84  [7] macro expansion  @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]  [8] include(mod::Module, _path::String)  @ Base ./Base.jl:303  [9] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2978  [10] top-level scope  @ stdin:5  [11] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2824  [13] include_string  @ ./loading.jl:2834 [inlined]  [14] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:329  [15] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/precompile.jl:13 in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/Zygote.jl:1 in expression starting at stdin:5 ✗ Zygote 2 dependencies successfully precompiled in 50 seconds. 101 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: Zygote Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.13/Zygote/jl_pt2tL7" (ProcessExited(1)). WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import. NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions. NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Variable end`. Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`. WARNING: Imported binding InteractiveUtils.typesof was undeclared at import time during import to Zygote. ERROR: LoadError: UndefVarError: `typesof` not defined in `Zygote` Suggestion: this global was defined as `InteractiveUtils.typesof` but not assigned a value. Stacktrace: [1] top-level scope @ ~/.julia/packages/Zygote/1GK3J/src/precompile.jl:13 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [3] IncludeInto @ ./Base.jl:305 [inlined] [4] macro expansion @ ~/.julia/packages/Requires/1eCOK/src/Requires.jl:40 [inlined] [5] precompile() @ Zygote ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:63 [6] top-level scope @ ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:84 [7] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [8] include(mod::Module, _path::String) @ Base ./Base.jl:303 [9] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2978 [10] top-level scope @ stdin:5 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [13] include_string @ ./loading.jl:2834 [inlined] [14] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [15] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/precompile.jl:13 in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/Zygote.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/GaussianMarkovRandomFields/rdm1Y/test/linear_maps/test_ad_jacobian.jl:1 in expression starting at /home/pkgeval/.julia/packages/GaussianMarkovRandomFields/rdm1Y/test/GaussianMarkovRandomFieldsTests.jl:1 in expression starting at /home/pkgeval/.julia/packages/GaussianMarkovRandomFields/rdm1Y/test/runtests.jl:2 Testing failed after 96.41s ERROR: LoadError: Package GaussianMarkovRandomFields errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2414 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2269 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [12] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 399.75s: package fails to precompile