Package evaluation of GPLikelihoods on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T02:07:12.341


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.65s


################################################################################
# Installation
#

Installing GPLikelihoods...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [6031954c] + GPLikelihoods v0.4.7
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [d360d2e6] + ChainRulesCore v1.25.1
  [34da2185] + Compat v4.16.0
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
  [31c24e10] + Distributions v0.25.119
  [ffbed154] + DocStringExtensions v0.9.4
⌅ [442a2c76] + FastGaussQuadrature v0.5.1
  [1a297f60] + FillArrays v1.13.0
⌅ [d9f16b24] + Functors v0.4.12
  [6031954c] + GPLikelihoods v0.4.7
  [34004b35] + HypergeometricFunctions v0.3.28
  [3587e190] + InverseFunctions v0.1.17
  [92d709cd] + IrrationalConstants v0.2.4
  [692b3bcd] + JLLWrappers v1.7.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.0
  [90014a1f] + PDMats v0.11.34
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [79098fc4] + Rmath v0.8.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.1
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
  [4c63d2b9] + StatsFuns v1.5.0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.12.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 4.17s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
ERROR: LoadError: The following 1 direct dependency failed to precompile:

Zygote 

Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.13/Zygote/jl_0XSvQE" (ProcessExited(1)).
WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import.
  NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Variable end`.
  Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`.
WARNING: Imported binding InteractiveUtils.typesof was undeclared at import time during import to Zygote.
ERROR: LoadError: UndefVarError: `typesof` not defined in `Zygote`
Suggestion: this global was defined as `InteractiveUtils.typesof` but not assigned a value.
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/Zygote/1GK3J/src/precompile.jl:13
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
  [3] IncludeInto
    @ ./Base.jl:305 [inlined]
  [4] macro expansion
    @ ~/.julia/packages/Requires/1eCOK/src/Requires.jl:40 [inlined]
  [5] precompile()
    @ Zygote ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:63
  [6] top-level scope
    @ ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:84
  [7] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
  [8] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
  [9] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2978
 [10] top-level scope
    @ stdin:5
 [11] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [13] include_string
    @ ./loading.jl:2834 [inlined]
 [14] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [15] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/precompile.jl:13
in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/Zygote.jl:1
in expression starting at stdin:
in expression starting at /PkgEval.jl/scripts/precompile.jl:37

Precompilation failed after 69.84s



################################################################################
# Testing
#

     Testing GPLikelihoods
      Status `/tmp/jl_qhjnJX/Project.toml`
  [4c88cf16] Aqua v0.8.11
  [31c24e10] Distributions v0.25.119
⌅ [d9f16b24] Functors v0.4.12
  [6031954c] GPLikelihoods v0.4.7
  [4c63d2b9] StatsFuns v1.5.0
⌅ [e88e6eb3] Zygote v0.6.76
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_qhjnJX/Manifest.toml`
  [621f4979] AbstractFFTs v1.5.0
  [79e6a3ab] Adapt v4.3.0
  [66dad0bd] AliasTables v1.1.3
  [4c88cf16] Aqua v0.8.11
  [a9b6321e] Atomix v1.1.1
  [fa961155] CEnum v0.5.0
  [082447d4] ChainRules v1.72.3
  [d360d2e6] ChainRulesCore v1.25.1
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.16.0
  [187b0558] ConstructionBase v1.5.8
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [31c24e10] Distributions v0.25.119
  [ffbed154] DocStringExtensions v0.9.4
⌅ [442a2c76] FastGaussQuadrature v0.5.1
  [1a297f60] FillArrays v1.13.0
  [f6369f11] ForwardDiff v1.0.1
⌅ [d9f16b24] Functors v0.4.12
  [6031954c] GPLikelihoods v0.4.7
  [0c68f7d7] GPUArrays v11.2.2
  [46192b85] GPUArraysCore v0.2.0
  [076d061b] HashArrayMappedTries v0.2.0
  [34004b35] HypergeometricFunctions v0.3.28
  [7869d1d1] IRTools v0.4.14
  [3587e190] InverseFunctions v0.1.17
  [92d709cd] IrrationalConstants v0.2.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [63c18a36] KernelAbstractions v0.9.34
  [929cbde3] LLVM v9.3.1
  [2ab3a3ac] LogExpFunctions v0.3.29
  [1914dd2f] MacroTools v0.5.16
  [e1d29d7a] Missings v1.2.0
  [77ba4419] NaNMath v1.1.3
  [bac558e1] OrderedCollections v1.8.0
  [90014a1f] PDMats v0.11.34
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.4.3
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [c1ae055f] RealDot v0.1.0
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.8.0
  [7e506255] ScopedValues v1.3.0
  [a2af1166] SortingAlgorithms v1.2.1
  [dc90abb0] SparseInverseSubset v0.1.2
  [276daf66] SpecialFunctions v2.5.1
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.4
  [4c63d2b9] StatsFuns v1.5.0
  [09ab397b] StructArrays v0.7.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [013be700] UnsafeAtomics v0.3.0
⌅ [e88e6eb3] Zygote v0.6.76
  [700de1a5] ZygoteRules v0.2.7
  [dad2f222] LLVMExtra_jll v0.0.35+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.12.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.12.1+1
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2024.12.31
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.5+0
  [458c3c95] OpenSSL_jll v3.0.16+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.12.0+0
  [8e850ede] nghttp2_jll v1.65.0+0
  [3f19e933] p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Precompiling packages...
Info Given Zygote was explicitly requested, output will be shown live 
WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import.
  NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Variable end`.
  Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`.
WARNING: Imported binding InteractiveUtils.typesof was undeclared at import time during import to Zygote.
ERROR: LoadError: UndefVarError: `typesof` not defined in `Zygote`
Suggestion: this global was defined as `InteractiveUtils.typesof` but not assigned a value.
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/Zygote/1GK3J/src/precompile.jl:13
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
  [3] IncludeInto
    @ ./Base.jl:305 [inlined]
  [4] macro expansion
    @ ~/.julia/packages/Requires/1eCOK/src/Requires.jl:40 [inlined]
  [5] precompile()
    @ Zygote ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:63
  [6] top-level scope
    @ ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:84
  [7] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
  [8] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
  [9] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2978
 [10] top-level scope
    @ stdin:5
 [11] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [13] include_string
    @ ./loading.jl:2834 [inlined]
 [14] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [15] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/precompile.jl:13
in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/Zygote.jl:1
in expression starting at stdin:5
           ✗ Zygote
  0 dependencies successfully precompiled in 32 seconds. 103 already precompiled.

ERROR: LoadError: The following 1 direct dependency failed to precompile:

Zygote 

Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.13/Zygote/jl_xaDjnZ" (ProcessExited(1)).
WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import.
  NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Variable end`.
  Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`.
WARNING: Imported binding InteractiveUtils.typesof was undeclared at import time during import to Zygote.
ERROR: LoadError: UndefVarError: `typesof` not defined in `Zygote`
Suggestion: this global was defined as `InteractiveUtils.typesof` but not assigned a value.
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/Zygote/1GK3J/src/precompile.jl:13
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
  [3] IncludeInto
    @ ./Base.jl:305 [inlined]
  [4] macro expansion
    @ ~/.julia/packages/Requires/1eCOK/src/Requires.jl:40 [inlined]
  [5] precompile()
    @ Zygote ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:63
  [6] top-level scope
    @ ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:84
  [7] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
  [8] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
  [9] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2978
 [10] top-level scope
    @ stdin:5
 [11] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [13] include_string
    @ ./loading.jl:2834 [inlined]
 [14] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [15] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/precompile.jl:13
in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/Zygote.jl:1
in expression starting at stdin:
in expression starting at /home/pkgeval/.julia/packages/GPLikelihoods/wX4ie/test/runtests.jl:11

Testing failed after 51.49s

ERROR: LoadError: Package GPLikelihoods errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2414
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2269 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:486
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:331
 [12] _start()
    @ Base ./client.jl:563
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 154.81s: package fails to precompile