Package evaluation of FeatureSelection on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T00:05:06.139 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.74s ################################################################################ # Installation # Installing FeatureSelection... Resolving package versions... Installed DataValueInterfaces ───────── v1.0.0 Installed OrderedCollections ────────── v1.8.0 Installed DataAPI ───────────────────── v1.16.0 Installed Tables ────────────────────── v1.12.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed TableTraits ───────────────── v1.0.1 Installed StatisticalTraits ─────────── v3.4.0 Installed ScientificTypesBase ───────── v3.0.0 Installed MLJModelInterface ─────────── v1.11.1 Installed FeatureSelection ──────────── v0.2.2 Updating `~/.julia/environments/v1.13/Project.toml` [33837fe5] + FeatureSelection v0.2.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [33837fe5] + FeatureSelection v0.2.2 [82899510] + IteratorInterfaceExtensions v1.0.0 [e80e1ace] + MLJModelInterface v1.11.1 [bac558e1] + OrderedCollections v1.8.0 [30f210dd] + ScientificTypesBase v3.0.0 [64bff920] + StatisticalTraits v3.4.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [2a0f44e3] + Base64 v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [d6f4376e] + Markdown v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [4ec0a83e] + Unicode v1.11.0 Installation completed after 3.8s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6301.4 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 747.27s ################################################################################ # Testing # Testing FeatureSelection Status `/tmp/jl_3BLor5/Project.toml` [4c88cf16] Aqua v0.8.11 [31c24e10] Distributions v0.25.119 [33837fe5] FeatureSelection v0.2.2 ⌃ [a7f614a8] MLJBase v1.7.0 [c6f25543] MLJDecisionTreeInterface v0.4.2 [e80e1ace] MLJModelInterface v1.11.1 ⌅ [5ae90465] MLJScikitLearnInterface v0.6.1 [03970b2e] MLJTuning v0.8.8 [30f210dd] ScientificTypesBase v3.0.0 [860ef19b] StableRNGs v1.0.2 ⌅ [a19d573c] StatisticalMeasures v0.1.7 [bd369af6] Tables v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_3BLor5/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.11 [dce04be8] ArgCheck v2.5.0 [a9b6321e] Atomix v1.1.1 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [324d7699] CategoricalArrays v0.10.8 [af321ab8] CategoricalDistributions v0.1.15 [d360d2e6] ChainRulesCore v1.25.1 [3da002f7] ColorTypes v0.12.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [992eb4ea] CondaPkg v0.2.28 [187b0558] ConstructionBase v1.5.8 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [7806a523] DecisionTree v0.12.4 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.119 [ffbed154] DocStringExtensions v0.9.4 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [33837fe5] FeatureSelection v0.2.2 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [22cec73e] InitialValues v0.3.1 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [0f8b85d8] JSON3 v1.14.2 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.34 [b964fa9f] LaTeXStrings v1.4.0 [a5e1c1ea] LatinHypercubeSampling v1.9.0 ⌅ [92ad9a40] LearnAPI v0.1.0 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 ⌃ [a7f614a8] MLJBase v1.7.0 [c6f25543] MLJDecisionTreeInterface v0.4.2 [e80e1ace] MLJModelInterface v1.11.1 ⌅ [5ae90465] MLJScikitLearnInterface v0.6.1 [03970b2e] MLJTuning v0.8.8 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.16 [128add7d] MicroCollections v0.2.0 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.2.0 [872c559c] NNlib v0.9.30 [71a1bf82] NameResolution v0.1.5 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.34 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [6099a3de] PythonCall v0.9.24 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [321657f4] ScientificTypes v3.1.0 [30f210dd] ScientificTypesBase v3.0.0 [6e75b9c4] ScikitLearnBase v0.5.0 [7e506255] ScopedValues v1.3.0 [6c6a2e73] Scratch v1.2.1 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [171d559e] SplittablesBase v0.1.15 [860ef19b] StableRNGs v1.0.2 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 ⌅ [a19d573c] StatisticalMeasures v0.1.7 [c062fc1d] StatisticalMeasuresBase v0.1.2 [64bff920] StatisticalTraits v3.4.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.5.0 [892a3eda] StringManipulation v0.4.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [28d57a85] Transducers v0.4.84 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.0 [e17b2a0c] UnsafePointers v1.0.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [f8abcde7] micromamba_jll v1.5.8+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... CondaPkg Found dependencies: /home/pkgeval/.julia/packages/MLJScikitLearnInterface/oYeTs/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/WMWY0/CondaPkg.toml CondaPkg Resolving changes + openssl + python + scikit-learn CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_3BLor5/.CondaPkg ✔ Created /tmp/jl_3BLor5/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_3BLor5/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.1" │ │ [dependencies.scikit-learn] │ channel = "conda-forge" │ version = ">=1.2, <1.4" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cpython*" │ version = ">=3.8,<4" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" └ description = "automatically generated by CondaPkg.jl" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_3BLor5/.CondaPkg/pixi.toml ✔ The default environment has been installed. Test Summary: | Pass Total Time Aqua.jl | 11 11 1m07.9s Test Summary: | Pass Total Time Feat Selector | 12 12 13.5s [ Info: Training machine(DeterministicRecursiveFeatureElimination(model = RandomForestRegressor(max_depth = -1, …), …), …). [ Info: Fitting estimator with 10 features. [ Info: Fitting estimator with 9 features. [ Info: Fitting estimator with 8 features. [ Info: Fitting estimator with 7 features. [ Info: Fitting estimator with 6 features. [ Info: Fitting estimator with 5 features. [ Info: Training machine(ProbabilisticRecursiveFeatureElimination(model = RandomForestClassifier(max_depth = -1, …), …), …). [ Info: Fitting estimator with 10 features. [ Info: Fitting estimator with 9 features. [ Info: Fitting estimator with 8 features. [ Info: Fitting estimator with 7 features. [ Info: Fitting estimator with 6 features. [ Info: Fitting estimator with 5 features. [ Info: Training machine(DeterministicRecursiveFeatureElimination(model = RandomForestRegressor(max_depth = -1, …), …), …). [ Info: Fitting estimator with 10 features. [ Info: Fitting estimator with 9 features. [ Info: Fitting estimator with 8 features. [ Info: Fitting estimator with 7 features. [ Info: Fitting estimator with 6 features. [ Info: Fitting estimator with 5 features. Test Summary: | Pass Total Time RecursiveFeatureElimination | 27 27 59.4s [ Info: Training machine(DeterministicRecursiveFeatureElimination(model = SVMRegressor(kernel = linear, …), …), …). [ Info: Fitting estimator with 10 features. ┌ Error: Problem fitting the machine machine(DeterministicRecursiveFeatureElimination(model = SVMRegressor(kernel = linear, …), …), …). └ @ MLJBase ~/.julia/packages/MLJBase/7nGJF/src/machines.jl:694 [ Info: Running type checks... [ Info: Type checks okay. Compare results for RFE with scikit-learn: Error During Test at /home/pkgeval/.julia/packages/FeatureSelection/uPgNd/test/models/rfe.jl:111 Got exception outside of a @test MethodError: no method matching mapreduce_impl(::Statistics.var"#centralizedabs2fun##0#centralizedabs2fun##1"{Float64}, ::typeof(+), ::Matrix{Float64}, ::Int64, ::Int64) The function `mapreduce_impl` exists, but no method is defined for this combination of argument types. Closest candidates are: mapreduce_impl(::Any, ::Any, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer, !Matched::Int64) @ Base reduce.jl:263 mapreduce_impl(::Any, ::Any, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer) @ Base reduce.jl:286 mapreduce_impl(::Any, !Matched::Union{typeof(max), typeof(min)}, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer) @ Base reduce.jl:649 ... Stacktrace: [1] centralize_sumabs2(A::Matrix{Float64}, m::Float64, ifirst::Int64, ilast::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:257 [2] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:275 [3] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [4] varm! @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:304 [inlined] [5] _varm @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [inlined] [6] varm @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [7] _var @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [8] var @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [9] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [10] std @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [11] fit(model::SVMRegressor, verbosity::Int64, X::@NamedTuple{x1::SubArray{Float64, 1, Matrix{Float64}, Tuple{Base.Slice{Base.OneTo{Int64}}, Int64}, true}, x2::SubArray{Float64, 1, Matrix{Float64}, Tuple{Base.Slice{Base.OneTo{Int64}}, Int64}, true}, x3::SubArray{Float64, 1, Matrix{Float64}, Tuple{Base.Slice{Base.OneTo{Int64}}, Int64}, true}, x4::SubArray{Float64, 1, Matrix{Float64}, Tuple{Base.Slice{Base.OneTo{Int64}}, Int64}, true}, x5::SubArray{Float64, 1, Matrix{Float64}, Tuple{Base.Slice{Base.OneTo{Int64}}, Int64}, true}, x6::SubArray{Float64, 1, Matrix{Float64}, Tuple{Base.Slice{Base.OneTo{Int64}}, Int64}, true}, x7::SubArray{Float64, 1, Matrix{Float64}, Tuple{Base.Slice{Base.OneTo{Int64}}, Int64}, true}, x8::SubArray{Float64, 1, Matrix{Float64}, Tuple{Base.Slice{Base.OneTo{Int64}}, Int64}, true}, x9::SubArray{Float64, 1, Matrix{Float64}, Tuple{Base.Slice{Base.OneTo{Int64}}, Int64}, true}, x10::SubArray{Float64, 1, Matrix{Float64}, Tuple{Base.Slice{Base.OneTo{Int64}}, Int64}, true}}, y::Vector{Float64}) @ MLJScikitLearnInterface ~/.julia/packages/MLJScikitLearnInterface/oYeTs/src/macros.jl:166 [12] fit(::FeatureSelection.DeterministicRecursiveFeatureElimination{SVMRegressor}, ::Int64, ::Tables.MatrixTable{Matrix{Float64}}, ::Vector{Float64}) @ FeatureSelection ~/.julia/packages/FeatureSelection/uPgNd/src/models/rfe.jl:312 [13] fit_only!(mach::Machine{FeatureSelection.DeterministicRecursiveFeatureElimination{SVMRegressor}, FeatureSelection.DeterministicRecursiveFeatureElimination{SVMRegressor}, true}; rows::Nothing, verbosity::Int64, force::Bool, composite::Nothing) @ MLJBase ~/.julia/packages/MLJBase/7nGJF/src/machines.jl:692 [14] fit_only! @ ~/.julia/packages/MLJBase/7nGJF/src/machines.jl:617 [inlined] [15] #fit!#64 @ ~/.julia/packages/MLJBase/7nGJF/src/machines.jl:789 [inlined] [16] fit!(mach::Machine{FeatureSelection.DeterministicRecursiveFeatureElimination{SVMRegressor}, FeatureSelection.DeterministicRecursiveFeatureElimination{SVMRegressor}, true}) @ MLJBase ~/.julia/packages/MLJBase/7nGJF/src/machines.jl:786 [17] top-level scope @ ~/.julia/packages/FeatureSelection/uPgNd/test/models/rfe.jl:113 [18] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1835 [inlined] [19] macro expansion @ ~/.julia/packages/FeatureSelection/uPgNd/test/models/rfe.jl:152 [inlined] [20] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [21] top-level scope @ ~/.julia/packages/FeatureSelection/uPgNd/test/runtests.jl:10 [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [23] top-level scope @ none:6 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:297 [26] _start() @ Base ./client.jl:563 Test Summary: | Error Total Time Compare results for RFE with scikit-learn | 1 1 36.7s RNG of the outermost testset: Random.Xoshiro(0x897fd15498d07ff1, 0xac6183fb65ede71b, 0x2dc4be4129e9b83d, 0x34ed836fcbcb0493, 0xe5faac9b2eb7ee78) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/FeatureSelection/uPgNd/test/models/rfe.jl:111 in expression starting at /home/pkgeval/.julia/packages/FeatureSelection/uPgNd/test/runtests.jl:10 Testing failed after 274.24s ERROR: LoadError: Package FeatureSelection errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2414 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2269 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [12] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1067.37s: package tests unexpectedly errored