Package evaluation of EpithelialDynamics1D on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T06:15:52.740 ################################################################################ # Set-up # Set-up completed after 0.23s ################################################################################ # Installation # Installing EpithelialDynamics1D... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [ace8a2d7] + EpithelialDynamics1D v1.8.3 Updating `~/.julia/environments/v1.13/Manifest.toml` ⌅ [47edcb42] + ADTypes v0.2.7 [7d9f7c33] + Accessors v0.1.42 ⌅ [79e6a3ab] + Adapt v3.7.2 [66dad0bd] + AliasTables v1.1.3 ⌃ [4fba245c] + ArrayInterface v7.7.1 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.6 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [82cc6244] + DataInterpolations v4.8.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌃ [2b5f629d] + DiffEqBase v6.130.0 ⌅ [459566f4] + DiffEqCallbacks v2.36.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [ace8a2d7] + EpithelialDynamics1D v1.8.3 [e2ba6199] + ExprTools v0.1.10 ⌅ [7034ab61] + FastBroadcast v0.2.8 [1a297f60] + FillArrays v1.13.0 [64ca27bc] + FindFirstFunctions v1.4.1 [6a86dc24] + FiniteDiff v2.27.0 ⌃ [cfdabe9e] + FiniteVolumeMethod1D v1.1.3 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 ⌅ [d9f16b24] + Functors v0.4.12 ⌅ [46192b85] + GPUArraysCore v0.1.5 [615f187c] + IfElse v0.1.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 [a903a81a] + MovingBoundaryProblems1D v1.0.3 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [d41bc354] + NLSolversBase v7.8.3 [2774e3e8] + NLsolve v4.5.1 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.0 [d96e819e] + Parameters v0.12.3 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 ⌃ [d236fae5] + PreallocationTools v0.4.24 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [3cdcf5f2] + RecipesBase v1.3.4 ⌅ [731186ca] + RecursiveArrayTools v2.38.10 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.14 [94e857df] + SIMDTypes v0.1.0 ⌅ [0bca4576] + SciMLBase v1.98.1 [c0aeaf25] + SciMLOperators v0.3.13 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 ⌅ [aedffcd0] + Static v0.8.10 [0d7ed370] + StaticArrayInterface v1.8.0 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 ⌅ [2efcf032] + SymbolicIndexingInterface v0.2.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [8290d209] + ThreadingUtilities v0.5.3 [410a4b4d] + Tricks v0.1.10 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 8.2s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 13426.0 ms ? SciMLBase 3455.1 ms ✓ DataInterpolations → DataInterpolationsChainRulesCoreExt 7767.2 ms ? MovingBoundaryProblems1D 8770.5 ms ? FiniteVolumeMethod1D 53834.2 ms ? DiffEqBase 13871.9 ms ? DiffEqCallbacks 7393.3 ms ? EpithelialDynamics1D 1 dependency successfully precompiled in 110 seconds. 124 already precompiled. 6 dependencies failed but may be precompilable after restarting julia 6 dependencies had output during precompilation: ┌ MovingBoundaryProblems1D │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ SciMLBase │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ DiffEqCallbacks │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ DiffEqBase │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ EpithelialDynamics1D │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ FiniteVolumeMethod1D │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 116.54s ################################################################################ # Loading # Loading EpithelialDynamics1D... Precompiling packages... 6238.7 ms ? SciMLBase 7479.4 ms ? MovingBoundaryProblems1D 8044.9 ms ? FiniteVolumeMethod1D 10570.7 ms ? DiffEqBase 12335.1 ms ? DiffEqCallbacks Info Given EpithelialDynamics1D was explicitly requested, output will be shown live  WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 8069.3 ms ? EpithelialDynamics1D WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... Info Given SciMLBase was explicitly requested, output will be shown live  WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 6347.2 ms ? SciMLBase WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... 1879.7 ms ✓ FiniteDiff 6020.6 ms ? SciMLBase 1451.3 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 4255.7 ms ? DiffEqBase 5039.5 ms ✓ NLSolversBase 7280.2 ms ✓ LineSearches 5109.5 ms ✓ NLsolve Info Given DiffEqCallbacks was explicitly requested, output will be shown live  ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-002c-be6de3bdb376 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2613 4774.7 ms ? DiffEqCallbacks 5 dependencies successfully precompiled in 37 seconds. 108 already precompiled. 1 dependency precompiled but a different version is currently loaded. Restart julia to access the new version. Otherwise, loading dependents of this package may trigger further precompilation to work with the unexpected version. 3 dependencies failed but may be precompilable after restarting julia 3 dependencies had output during precompilation: ┌ SciMLBase │ WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/szsYq/src/operators/operators.jl:7. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ DiffEqCallbacks │ [Output was shown above] └ ┌ DiffEqBase │ ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-002c-be6de3bdb376 is missing from the cache. │ │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. │ └ @ Base loading.jl:2613 └ ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-002c-be6de3bdb376 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2613 Precompiling packages... 6451.6 ms ? SciMLBase Info Given DiffEqBase was explicitly requested, output will be shown live  ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-002c-be6de3bdb376 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2613 4014.3 ms ? DiffEqBase ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-002c-be6de3bdb376 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2613 Precompiling packages... 5822.5 ms ? SciMLBase Info Given FiniteVolumeMethod1D was explicitly requested, output will be shown live  ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-002c-be6de3bdb376 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2613 1103.4 ms ? FiniteVolumeMethod1D ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-002c-be6de3bdb376 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2613 Precompiling packages... 6105.4 ms ? SciMLBase Info Given MovingBoundaryProblems1D was explicitly requested, output will be shown live  ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-002c-be6de3bdb376 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2613 1154.9 ms ? MovingBoundaryProblems1D ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-002c-be6de3bdb376 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2613 Precompiling packages... 8010.7 ms ✓ DataInterpolations 1 dependency successfully precompiled in 8 seconds. 37 already precompiled. Precompiling packages... 3461.9 ms ✓ DataInterpolations → DataInterpolationsChainRulesCoreExt 1 dependency successfully precompiled in 4 seconds. 44 already precompiled. Loading completed after 210.77s PkgEval succeeded after 359.66s