Package evaluation of DynamicHMCModels on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T07:40:55.567 ################################################################################ # Set-up # Set-up completed after 0.25s ################################################################################ # Installation # Installing DynamicHMCModels... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [6266e5bf] + DynamicHMCModels v2.1.4 Updating `~/.julia/environments/v1.13/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [4fba245c] + ArrayInterface v7.18.0 ⌅ [6e4b80f9] + BenchmarkTools v0.7.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.6 ⌅ [336ed68f] + CSV v0.8.5 [d360d2e6] + ChainRulesCore v1.25.1 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌃ [a93c6f00] + DataFrames v1.4.4 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.119 ⌅ [ffbed154] + DocStringExtensions v0.8.6 ⌃ [bbc10e6e] + DynamicHMC v3.3.0 [6266e5bf] + DynamicHMCModels v2.1.4 [1a297f60] + FillArrays v1.13.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 ⌅ [46192b85] + GPUArraysCore v0.1.6 [3e5b6fbb] + HostCPUFeatures v0.1.17 [615f187c] + IfElse v0.1.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 ⌅ [92d709cd] + IrrationalConstants v0.1.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [1fad7336] + LazyStack v0.1.3 ⌅ [6fdf6af0] + LogDensityProblems v0.10.6 [2ab3a3ac] + LogExpFunctions v0.3.29 ⌅ [6e857e4b] + MCMCDiagnostics v0.3.0 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 ⌅ [0987c9cc] + MonteCarloMeasurements v0.10.4 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.34 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 ⌅ [69de0a69] + Parsers v1.1.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 ⌅ [79098fc4] + Rmath v0.7.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [91c51154] + SentinelArrays v1.4.8 [66db9d55] + SnoopPrecompile v1.0.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 ⌅ [4c63d2b9] + StatsFuns v0.9.18 [5e0ebb24] + Strided v2.3.0 [4db3bf67] + StridedViews v0.4.1 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [02d47bb6] + TensorCast v0.4.8 ⌅ [84d833dd] + TransformVariables v0.3.12 [24ddb15e] + TransmuteDims v0.1.16 [9d95972d] + TupleTools v1.6.0 [3a884ed6] + UnPack v1.0.2 [3d5dd08c] + VectorizationBase v0.21.71 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [f50d1b31] + Rmath_jll v0.4.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 7.54s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 2808.7 ms ✓ BenchmarkTools 5254.6 ms ✓ SpecialFunctions 8965.2 ms ✓ StatsBase 4359.7 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 14914.2 ms ✓ ForwardDiff 4786.9 ms ✓ MCMCDiagnostics 13061.5 ms ✓ StatsFuns 5046.2 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 5234.4 ms ✓ TransformVariables 28939.7 ms ✓ Distributions 4817.4 ms ✓ LogDensityProblems 6828.8 ms ✓ Distributions → DistributionsTestExt 6592.7 ms ✓ Distributions → DistributionsChainRulesCoreExt 42191.0 ms ✓ DynamicHMC 61564.8 ms ✓ MonteCarloMeasurements 145292.8 ms ✓ DynamicHMCModels 16 dependencies successfully precompiled in 363 seconds. 134 already precompiled. Precompilation completed after 369.61s ################################################################################ # Loading # Loading DynamicHMCModels... ┌ Warning: Error requiring `ForwardDiff` from `LogDensityProblems` │ exception = │ LoadError: ConcurrencyViolationError("deadlock detected in loading Unicode using Unicode (while loading ArrayInterfaceGPUArraysCoreExt and CPUSummary and SuiteSparse and TableTraits and InvertedIndices and BitTwiddlingConvenienceFunctions and IteratorInterfaceExtensions and DataStructures and Compat and HostCPUFeatures and Base64 and VectorizationBase and StatsFuns and StaticArraysChainRulesCoreExt and TensorCast and RecipesBase and DistributionsChainRulesCoreExt and Future and DataFrames and FillArraysPDMatsExt and Markdown and Adapt and MonteCarloMeasurements and ForwardDiffStaticArraysExt and StringManipulation and Distributions and TupleTools and StaticArrayInterface and PooledArrays and AdaptSparseArraysExt and SIMDTypes and StyledStrings and AdaptStaticArraysExt and ChainRulesCoreSparseArraysExt and CompatLinearAlgebraExt and StaticArrayInterfaceStaticArraysExt and Missings and ArrayInterfaceSparseArraysExt and ArrayInterface and ProgressMeter and PrettyTables and LogExpFunctionsInverseFunctionsExt and CSV and AliasTables and PDMats and StridedViewsPtrArraysExt and LogExpFunctionsChainRulesCoreExt and PackageExtensionCompat and BenchmarkTools and FillArraysSparseArraysExt and SortingAlgorithms and ManualMemory and Serialization and PrecompileTools and REPL and LayoutPointers and ArrayInterfaceStaticArraysCoreExt and SuiteSparse_jll and StatsBase and IfElse and Static and Mmap and Rmath_jll and Strided and SpecialFunctionsChainRulesCoreExt and TransmuteDims and QuadGK and StaticArrays and DataAPI and Parsers and SentinelArrays and CommonWorldInvalidations and Statistics and StridedViews and LazyStack and Rmath and DynamicHMCModels and CpuId and Distributed and LogDensityProblems and JuliaSyntaxHighlighting and ArrayInterfaceChainRulesCoreExt and GPUArraysCore and DynamicHMC and LaTeXStrings and SnoopPrecompile and DataValueInterfaces and InverseFunctions and Tables and StatsAPI and SparseArrays and SparseArraysExt and Crayons and SLEEFPirates and FillArraysStatisticsExt and InverseFunctionsDatesExt and StaticArraysStatisticsExt and InteractiveUtils and ChainRulesCore and FillArrays and PtrArrays)") │ Stacktrace: │ [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) │ @ Base ./loading.jl:2182 │ [2] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) │ @ Base ./loading.jl:2016 │ [3] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2599 │ [4] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2465 │ [5] macro expansion │ @ ./loading.jl:2393 [inlined] │ [6] macro expansion │ @ ./lock.jl:376 [inlined] │ [7] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2358 │ [8] require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2334 │ [9] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:304 │ [10] top-level scope │ @ ~/.julia/packages/Requires/1eCOK/src/Requires.jl:40 │ [11] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [12] EvalInto │ @ ./boot.jl:494 [inlined] │ [13] (::LogDensityProblems.var"#__init__##10#__init__##11")() │ @ LogDensityProblems ~/.julia/packages/Requires/1eCOK/src/require.jl:101 │ [14] macro expansion │ @ ./timing.jl:461 [inlined] │ [15] err(f::Any, listener::Module, modname::String, file::String, line::Any) │ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:47 │ [16] (::LogDensityProblems.var"#__init__##8#__init__##9")() │ @ LogDensityProblems ~/.julia/packages/Requires/1eCOK/src/require.jl:100 │ [17] withpath(f::Any, path::String) │ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:37 │ [18] (::LogDensityProblems.var"#__init__##6#__init__##7")() │ @ LogDensityProblems ~/.julia/packages/Requires/1eCOK/src/require.jl:99 │ [19] listenpkg(f::Any, pkg::Base.PkgId) │ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:20 │ [20] macro expansion │ @ ~/.julia/packages/Requires/1eCOK/src/require.jl:98 [inlined] │ [21] __init__() │ @ LogDensityProblems ~/.julia/packages/LogDensityProblems/mTlVj/src/LogDensityProblems.jl:234 │ [22] run_module_init(mod::Module, i::Int64) │ @ Base ./loading.jl:1415 │ [23] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) │ @ Base ./loading.jl:1403 │ [24] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) │ @ Base ./loading.jl:1291 │ [25] _include_from_serialized │ @ ./loading.jl:1246 [inlined] │ [26] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) │ @ Base ./loading.jl:2074 │ [27] __require_prelocked(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2599 │ [28] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2465 │ [29] macro expansion │ @ ./loading.jl:2393 [inlined] │ [30] macro expansion │ @ ./lock.jl:376 [inlined] │ [31] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2358 │ [32] require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2334 │ [33] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [34] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:297 │ [35] _start() │ @ Base ./client.jl:563 │ in expression starting at /home/pkgeval/.julia/packages/LogDensityProblems/mTlVj/src/AD_ForwardDiff.jl:6 └ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:51 Loading completed after 33.78s PkgEval succeeded after 425.56s