Package evaluation of DynamicHMC on Julia 1.13.0-DEV.443 (8a8e3d1f98*) started at 2025-04-29T05:31:53.742 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.49s ################################################################################ # Installation # Installing DynamicHMC... Resolving package versions... Installed GPUArraysCore ────────── v0.1.6 Installed IrrationalConstants ──── v0.2.4 Installed StridedViews ─────────── v0.4.1 Installed Requires ─────────────── v1.3.1 Installed LogExpFunctions ──────── v0.3.29 Installed PackageExtensionCompat ─ v1.0.2 Installed Strided ──────────────── v2.3.0 Installed MacroTools ───────────── v0.5.16 Installed Adapt ────────────────── v4.3.0 Installed TransmuteDims ────────── v0.1.16 Installed LazyStack ────────────── v0.1.3 Installed Compat ───────────────── v4.16.0 Installed LogDensityProblems ───── v2.1.2 Installed ArgCheck ─────────────── v2.5.0 Installed ChainRulesCore ───────── v1.25.1 Installed TensorCast ───────────── v0.4.8 Installed ProgressMeter ────────── v1.10.4 Installed FillArrays ───────────── v1.13.0 Installed TupleTools ───────────── v1.6.0 Installed StaticArrays ─────────── v1.9.13 Installed Preferences ──────────── v1.4.3 Installed DynamicHMC ───────────── v3.5.0 Installed Statistics ───────────── v1.11.1 Installed StaticArraysCore ─────── v1.4.3 Installed DocStringExtensions ──── v0.9.4 Installed PrecompileTools ──────── v1.3.2 Updating `~/.julia/environments/v1.13/Project.toml` [bbc10e6e] + DynamicHMC v3.5.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [dce04be8] + ArgCheck v2.5.0 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [ffbed154] + DocStringExtensions v0.9.4 [bbc10e6e] + DynamicHMC v3.5.0 [1a297f60] + FillArrays v1.13.0 ⌅ [46192b85] + GPUArraysCore v0.1.6 [92d709cd] + IrrationalConstants v0.2.4 [1fad7336] + LazyStack v0.1.3 [6fdf6af0] + LogDensityProblems v2.1.2 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [65ce6f38] + PackageExtensionCompat v1.0.2 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [ae029012] + Requires v1.3.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [5e0ebb24] + Strided v2.3.0 [4db3bf67] + StridedViews v0.4.1 [02d47bb6] + TensorCast v0.4.8 [24ddb15e] + TransmuteDims v0.1.16 [9d95972d] + TupleTools v1.6.0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 3.59s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4896.2 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 364.65s ################################################################################ # Testing # Testing DynamicHMC Status `/tmp/jl_wy96oj/Project.toml` [4c88cf16] Aqua v0.8.11 [dce04be8] ArgCheck v2.5.0 [ffbed154] DocStringExtensions v0.9.4 [bbc10e6e] DynamicHMC v3.5.0 [f6369f11] ForwardDiff v1.0.1 [09f84164] HypothesisTests v0.11.5 [c3a54625] JET v0.10.4 [6fdf6af0] LogDensityProblems v2.1.2 [feb245ec] LogDensityTestSuite v0.6.5 [2ab3a3ac] LogExpFunctions v0.3.29 [be115224] MCMCDiagnosticTools v0.3.14 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [84d833dd] TransformVariables v0.8.16 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_wy96oj/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.11 [dce04be8] ArgCheck v2.5.0 [d360d2e6] ChainRulesCore v1.25.1 [da1fd8a2] CodeTracking v1.3.9 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.119 [ffbed154] DocStringExtensions v0.9.4 [bbc10e6e] DynamicHMC v3.5.0 [1a297f60] FillArrays v1.13.0 [f6369f11] ForwardDiff v1.0.1 ⌅ [46192b85] GPUArraysCore v0.1.6 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [c3a54625] JET v0.10.4 [692b3bcd] JLLWrappers v1.7.0 ⌅ [aa1ae85d] JuliaInterpreter v0.9.46 [70703baa] JuliaSyntax v1.0.2 [1fad7336] LazyStack v0.1.3 [6fdf6af0] LogDensityProblems v2.1.2 [feb245ec] LogDensityTestSuite v0.6.5 [2ab3a3ac] LogExpFunctions v0.3.29 ⌃ [6f1432cf] LoweredCodeUtils v3.2.2 [be115224] MCMCDiagnosticTools v0.3.14 [e80e1ace] MLJModelInterface v1.11.1 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.34 [65ce6f38] PackageExtensionCompat v1.0.2 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.7 [30f210dd] ScientificTypesBase v3.0.0 [ed01d8cd] Sobol v1.5.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [64bff920] StatisticalTraits v3.4.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.5.0 [5e0ebb24] Strided v2.3.0 [4db3bf67] StridedViews v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [02d47bb6] TensorCast v0.4.8 [84d833dd] TransformVariables v0.8.16 [24ddb15e] TransmuteDims v0.1.16 [9d95972d] TupleTools v1.6.0 [3a884ed6] UnPack v1.0.2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time simulated meancov | 2 2 9.1s Test Summary: | Pass Total Time directions | 2 2 0.3s Test Summary: | Pass Total Time dummy adjacent tree full | 17 17 1.8s Test Summary: | Pass Total Time dummy adjacent tree turning | 15 15 0.7s Test Summary: | Pass Total Time dummy adjacent tree divergent | 13 13 0.9s Test Summary: | Pass Total Time dummy adjacent tree full backward | 29 29 0.3s Test Summary: | Pass Total Time dummy sampled tree | 27 27 0.3s Test Summary: | Pass Total Time transition calculations consistency check | 190527 190527 0.9s Test Summary: | Pass Total Time detailed balance | 1813168 1813168 4.0s Test Summary: | Pass Total Time Gaussian KE full | 400 400 24.7s Test Summary: | Pass Total Time Gaussian KE diagonal | 400 400 10.2s Test Summary: | Pass Total Time phasepoint internal consistency | 23 23 5.7s Test Summary: | Pass Total Time leapfrog calculation | 205 205 2.2s Test Summary: | Pass Total Time leapfrog Hamiltonian invariance | 1000 1000 0.5s Test Summary: | Pass Total Time leapfrog back and forth | 2200 2200 1.9s Test Summary: | Pass Total Time PhasePoint building blocks and infinite values | 9 9 1.2s Test Summary: | Pass Total Time Hamiltonian and KE printing | 3 3 0.8s Test Summary: | Pass Total Time unit normal simple HMC | 2 2 1.9s Test Summary: | Pass Total Time random booleans | 12 12 0.3s Test Summary: | Pass Total Time low-level turn statistics | 3 3 1.0s Test Summary: | Pass Total Time low-level visited statistics | 3 3 0.3s Test Summary: | Pass Total Time unconditional divergence | 4 4 1.4s Test Summary: | Pass Total Time normal NUTS HMC transition mean and cov | 20 20 3.7s Test Summary: | Pass Total Time stepsize general rootfinding | 7 7 0.3s Test Summary: | Pass Total Time dual averaging far | 4 4 0.3s Test Summary: | Pass Total Time dual averaging close | 1 1 0.0s Test Summary: | Pass Total Time dual averaging far and noisy | 1 1 0.0s Test Summary: | Pass Total Time fixed stepsize sanity checks | 3 3 0.0s Test Summary: | Pass Total Time find reasonable stepsize - random H, z | 100 100 0.0s Test Summary: | Pass Total Time error for non-finite initial density | 1 1 0.0s Test Summary: | Pass Total Time printing | 2 2 0.7s Test Summary: | Pass Total Time mcmc | 11 11 11.1s Test Summary: | Pass Total Time robust U-turn tests | 1 1 11.9s Test Summary: | Pass Total Time posterior accessors sanity checks | 2 2 1.6s Test Summary: | Pass Total Time summarize tree statistics | 15 15 5.2s Test Summary: | Pass Total Time log acceptance ratios | 2 2 1.2s Test Summary: | Pass Total Time leapfrog trajectory | 3 3 2.8s Test Summary: | Pass Total Time NUTS tests with random normal | 98 98 2m15.4s Test Summary: | Pass Total Time NUTS tests with specific normal distributions | 40 40 18.2s INFO while testing: mixture of two normals, dimension 3 ALERT some EBFMI = [0.489, 0.538, 0.555, 0.449, 0.428] > 0.5 Test Summary: | Pass Total Time NUTS tests with mixtures | 6 6 6.6s Test Summary: | Pass Total Time NUTS tests with heavier tails and skewness | 16 16 26.1s [toplevel-info] virtualized the context of Main (took 0.193 sec) [toplevel-info] entered into /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/DynamicHMC.jl [toplevel-info] entered into /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/utilities.jl [toplevel-info] exited from /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/utilities.jl (took 0.234 sec) [toplevel-info] entered into /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/trees.jl [toplevel-info] exited from /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/trees.jl (took 0.461 sec) [toplevel-info] entered into /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/hamiltonian.jl [toplevel-info] exited from /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/hamiltonian.jl (took 0.194 sec) [toplevel-info] entered into /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/stepsize.jl [toplevel-info] exited from /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/stepsize.jl (took 0.125 sec) [toplevel-info] entered into /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/NUTS.jl [toplevel-info] exited from /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/NUTS.jl (took 0.06 sec) [toplevel-info] entered into /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/reporting.jl [toplevel-info] exited from /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/reporting.jl (took 1.045 sec) [toplevel-info] entered into /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/mcmc.jl [toplevel-info] exited from /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/mcmc.jl (took 23.697 sec) [toplevel-info] entered into /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/diagnostics.jl [toplevel-info] exited from /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/diagnostics.jl (took 0.059 sec) [toplevel-info] exited from /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/src/DynamicHMC.jl (took 50.869 sec) [toplevel-info] analyzing from top-level definitions (1/185) [toplevel-info] 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[toplevel-info] analyzing from top-level definitions (146/185) [toplevel-info] analyzing from top-level definitions (147/185) [toplevel-info] analyzing from top-level definitions (148/185) [toplevel-info] analyzing from top-level definitions (149/185) [toplevel-info] analyzing from top-level definitions (150/185) [toplevel-info] analyzing from top-level definitions (151/185) [toplevel-info] analyzing from top-level definitions (152/185) [toplevel-info] analyzing from top-level definitions (153/185) [toplevel-info] analyzing from top-level definitions (154/185) [toplevel-info] analyzing from top-level definitions (155/185) [toplevel-info] analyzing from top-level definitions (156/185) [toplevel-info] analyzing from top-level definitions (157/185) [toplevel-info] analyzing from top-level definitions (158/185) [toplevel-info] analyzing from top-level definitions (159/185) [toplevel-info] analyzing from top-level definitions (160/185) [toplevel-info] analyzing from top-level definitions (161/185) [toplevel-info] analyzing from top-level definitions (162/185) [toplevel-info] analyzing from top-level definitions (163/185) [toplevel-info] analyzing from top-level definitions (164/185) [toplevel-info] analyzing from top-level definitions (165/185) [toplevel-info] analyzing from top-level definitions (166/185) [toplevel-info] analyzing from top-level definitions (167/185) [toplevel-info] analyzing from top-level definitions (168/185) [toplevel-info] analyzing from top-level definitions (169/185) [toplevel-info] analyzing from top-level definitions (170/185) [toplevel-info] analyzing from top-level definitions (171/185) [toplevel-info] analyzing from top-level definitions (172/185) [toplevel-info] analyzing from top-level definitions (173/185) [toplevel-info] analyzing from top-level definitions (174/185) [toplevel-info] analyzing from top-level definitions (175/185) [toplevel-info] analyzing from top-level definitions (176/185) [toplevel-info] analyzing from top-level definitions (177/185) [toplevel-info] analyzing from top-level definitions (178/185) [toplevel-info] analyzing from top-level definitions (179/185) [toplevel-info] analyzing from top-level definitions (180/185) [toplevel-info] analyzing from top-level definitions (181/185) [toplevel-info] analyzing from top-level definitions (182/185) [toplevel-info] analyzing from top-level definitions (183/185) [toplevel-info] analyzing from top-level definitions (184/185) [toplevel-info] analyzing from top-level definitions (185/185) [toplevel-info] analyzed 185 top-level definitions (took 67.592 sec) Test Summary: | Pass Total Time static analysis with JET.jl | 1 1 3m20.9s Test Summary: | Pass Total Time Aqua | 11 11 1m15.9s Testing DynamicHMC tests passed Testing completed after 625.25s PkgEval succeeded after 1034.6s