Package evaluation of DelayEmbeddings on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T02:10:53.478 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.16s ################################################################################ # Installation # Installing DelayEmbeddings... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [5732040d] + DelayEmbeddings v2.9.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [5732040d] + DelayEmbeddings v2.9.0 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 [1a297f60] + FillArrays v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [b8a86587] + NearestNeighbors v0.4.21 [645ca80c] + Neighborhood v0.2.4 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.34 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [40b095a5] + StateSpaceSets v2.4.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.5.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Installation completed after 4.08s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 192.7s ################################################################################ # Testing # Testing DelayEmbeddings Status `/tmp/jl_zQsCjo/Project.toml` [5732040d] DelayEmbeddings v2.9.0 [8bb1440f] DelimitedFiles v1.9.1 [6e36e845] DynamicalSystemsBase v3.14.0 [f43a241f] Downloads v1.7.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_zQsCjo/Manifest.toml` [47edcb42] ADTypes v1.14.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.18.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.6 [fb6a15b2] CloseOpenIntervals v0.1.13 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 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[8e850ede] nghttp2_jll v1.65.0+0 Testing Running tests... running test file embedding_tests.jl running test file separated/delaytime_test.jl Precompiling packages... 6269.0 ms ✓ RecursiveArrayTools 3754.7 ms ✓ FastPower → FastPowerForwardDiffExt 3323.0 ms ✓ FastBroadcast 3855.0 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 3863.0 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 34844.2 ms ✓ SciMLBase 4063.8 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 9894.5 ms ✓ DiffEqBase 9094.6 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 5959.5 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 13459.3 ms ✓ OrdinaryDiffEqCore 6012.2 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 17805.7 ms ✓ OrdinaryDiffEqTsit5 Info Given DynamicalSystemsBase was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl 12315.2 ms ✓ DynamicalSystemsBase 14 dependencies successfully precompiled in 135 seconds. 130 already precompiled. 9 dependencies had output during precompilation: ┌ DynamicalSystemsBase │ [Output was shown above] └ ┌ FastBroadcast │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ DiffEqBase → DiffEqBaseForwardDiffExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqTsit5 │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ DiffEqBase → DiffEqBaseSparseArraysExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ DiffEqBase │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqCore │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl Precompiling packages... 1493.2 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 1 dependency successfully precompiled in 2 seconds. 20 already precompiled. Precompiling packages... 1818.1 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 1 dependency successfully precompiled in 2 seconds. 23 already precompiled. Precompiling packages... Info Given DiffEqBaseDistributionsExt was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl 7347.8 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 1 dependency successfully precompiled in 8 seconds. 129 already precompiled. 1 dependency had output during precompilation: ┌ DiffEqBase → DiffEqBaseDistributionsExt │ [Output was shown above] └ ┌ Warning: Did not encounter a minimum, returning last `τ`. └ @ DelayEmbeddings ~/.julia/packages/DelayEmbeddings/AV1Ee/src/separated_de/estimate_delay.jl:82 running test file separated/embedding_dimension_test.jl Algorithm stopped due to convergence of E₁-statistic. Valid embedding achieved ✓. Algorithm stopped due to convergence of E₁-statistic. Valid embedding achieved ✓. Algorithm stopped due to convergence of E₁-statistic. Valid embedding achieved ✓. Stochastic signal, valid embedding NOT achieved ⨉. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to increasing FNNs. Double-check the FNN-statistic. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to increasing FNNs. Double-check the FNN-statistic. running test file unified/test_pecora.jl running test file unified/uzal_cost_test.jl Testing uzal_cost.jl... running test file unified/test_pecuzal_embedding.jl Testing pecuzal_method.jl... Initializing PECUZAL algorithm for univariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Starting 4-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 33.789714 seconds (45.36 M allocations: 3.618 GiB, 5.29% gc time, 71.05% compilation time) Initializing PECUZAL algorithm for univariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Starting 4-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 13.933623 seconds (19.98 M allocations: 1.660 GiB, 2.02% gc time, 67.11% compilation time) Initializing PECUZAL algorithm for univariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 12.608825 seconds (48.98 M allocations: 4.339 GiB, 8.94% gc time, 0.46% compilation time) Initializing PECUZAL algorithm for multivariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Starting 4-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 41.225146 seconds (148.67 M allocations: 11.454 GiB, 6.37% gc time, 16.87% compilation time) Initializing PECUZAL algorithm for multivariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Starting 4-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 24.060722 seconds (74.99 M allocations: 5.803 GiB, 3.64% gc time, 28.02% compilation time) Initializing PECUZAL algorithm for multivariate input... Starting 1-th embedding cycle... Starting 2-th embedding cycle... Starting 3-th embedding cycle... Algorithm stopped due to increasing L-values. VALID embedding achieved ✓. 28.470399 seconds (122.35 M allocations: 9.070 GiB, 6.61% gc time, 2.06% compilation time) Initializing PECUZAL algorithm for multivariate input... Starting 1-th embedding cycle... Algorithm stopped due to increasing L-values in the first embedding cycle. Valid embedding NOT achieved ⨉. 4.495475 seconds (5.09 M allocations: 791.625 MiB, 2.63% gc time, 55.21% compilation time) running test file unified/test_garcia.jl Testing garcia_almeida.jl... Algorithm stopped due to rising FNNs. Valid embedding achieved ✓. Algorithm stopped due to rising FNNs. Valid embedding achieved ✓. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to rising FNNs. Valid embedding achieved ✓. Algorithm stopped due to rising FNNs. Valid embedding achieved ✓. running test file unified/mdop_tests.jl Testing mdop_embedding.jl... Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Algorithm stopped due to rising FNNs. Valid embedding achieved ✓. Algorithm stopped due to sufficiently small FNNs. Valid embedding achieved ✓. Test Summary: | Pass Total Time DelayEmbeddings tests | 198 198 12m35.0s Testing DelayEmbeddings tests passed Testing completed after 769.5s PkgEval succeeded after 992.01s