Package evaluation of ColBERT on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T09:51:47.149


################################################################################
# Set-up
#


Set-up completed after 0.27s


################################################################################
# Installation
#

Installing ColBERT...
   Resolving package versions...
   Installed HTML_Entities ─ v1.0.1
    Updating `~/.julia/environments/v1.13/Project.toml`
  [7e8ad7a6] + ColBERT v0.1.0
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [dce04be8] + ArgCheck v2.5.0
  [a9b6321e] + Atomix v1.1.1
  [ab4f0b2a] + BFloat16s v0.5.1
  [198e06fe] + BangBang v0.4.4
  [9718e550] + Baselet v0.1.1
  [d1d4a3ce] + BitFlags v0.1.9
  [a4280ba5] + BytePairEncoding v0.5.2
  [fa961155] + CEnum v0.5.0
  [082447d4] + ChainRules v1.72.3
  [d360d2e6] + ChainRulesCore v1.25.1
  [944b1d66] + CodecZlib v0.7.8
  [7e8ad7a6] + ColBERT v0.1.0
  [bbf7d656] + CommonSubexpressions v0.3.1
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.16.0
  [a33af91c] + CompositionsBase v0.1.2
  [f0e56b4a] + ConcurrentUtilities v2.5.0
  [187b0558] + ConstructionBase v1.5.8
  [6add18c4] + ContextVariablesX v0.1.3
  [f4c16678] + DLFP8Types v0.1.0
  [9a962f9c] + DataAPI v1.16.0
  [124859b0] + DataDeps v0.7.13
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [244e2a9f] + DefineSingletons v0.1.2
  [8bb1440f] + DelimitedFiles v1.9.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [ffbed154] + DocStringExtensions v0.9.4
  [abbaa0e5] + DoubleArrayTries v0.1.1
  [460bff9d] + ExceptionUnwrapping v0.1.11
  [e2ba6199] + ExprTools v0.1.10
  [cc61a311] + FLoops v0.2.2
  [b9860ae5] + FLoopsBase v0.1.1
  [bb354801] + Fetch v0.1.4
  [5789e2e9] + FileIO v1.17.0
  [1a297f60] + FillArrays v1.13.0
⌅ [587475ba] + Flux v0.14.25
  [f6369f11] + ForwardDiff v1.0.1
  [9ed96fbb] + FuncPipelines v0.2.3
  [79abecb7] + FuncTransforms v0.1.1
⌅ [d9f16b24] + Functors v0.4.12
⌃ [0c68f7d7] + GPUArrays v10.3.1
⌅ [46192b85] + GPUArraysCore v0.1.6
  [7693890a] + HTML_Entities v1.0.1
  [cd3eb016] + HTTP v1.10.16
  [076d061b] + HashArrayMappedTries v0.2.0
  [3cc741c3] + HuggingFaceApi v0.1.0
  [7869d1d1] + IRTools v0.4.14
  [615f187c] + IfElse v0.1.1
  [22cec73e] + InitialValues v0.3.1
  [7d512f48] + InternedStrings v0.7.0
  [3587e190] + InverseFunctions v0.1.17
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
⌅ [033835bb] + JLD2 v0.4.54
  [692b3bcd] + JLLWrappers v1.7.0
  [682c06a0] + JSON v0.21.4
  [0f8b85d8] + JSON3 v1.14.2
  [b14d175d] + JuliaVariables v0.2.4
  [63c18a36] + KernelAbstractions v0.9.34
  [929cbde3] + LLVM v9.3.1
  [8ac3fa9e] + LRUCache v1.6.2
  [9c8b4983] + LightXML v0.9.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e6f89c97] + LoggingExtras v1.1.0
  [c2834f40] + MLCore v1.0.0
⌃ [7e8f7934] + MLDataDevices v1.5.3
  [d8e11817] + MLStyle v0.4.17
  [f1d291b0] + MLUtils v0.4.8
  [1914dd2f] + MacroTools v0.5.16
  [dbb5928d] + MappedArrays v0.4.2
  [739be429] + MbedTLS v1.1.9
  [128add7d] + MicroCollections v0.2.0
  [e1d29d7a] + Missings v1.2.0
  [872c559c] + NNlib v0.9.30
  [77ba4419] + NaNMath v1.1.3
  [71a1bf82] + NameResolution v0.1.5
  [12afc1b8] + NeuralAttentionlib v0.3.3
  [6fe1bfb0] + OffsetArrays v1.17.0
  [cf8be1f4] + OhMyArtifacts v0.3.1
  [0b1bfda6] + OneHotArrays v0.2.8
  [4d8831e6] + OpenSSL v1.4.3
⌅ [3bd65402] + Optimisers v0.3.4
  [bac558e1] + OrderedCollections v1.8.0
  [65ce6f38] + PackageExtensionCompat v1.0.2
  [69de0a69] + Parsers v2.8.3
  [570af359] + PartialFunctions v1.2.0
  [fbb45041] + Pickle v0.3.5
  [fa939f87] + Pidfile v1.3.0
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [8162dcfd] + PrettyPrint v0.2.0
  [13d12f88] + PrimitiveOneHot v0.2.1
  [33c8b6b6] + ProgressLogging v0.1.4
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] + PtrArrays v1.3.0
  [c1ae055f] + RealDot v0.1.0
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [cdf36688] + RustRegex v0.1.0
  [eeda0dda] + SafeTensors v1.2.0
  [7e506255] + ScopedValues v1.3.0
  [6c6a2e73] + Scratch v1.2.1
  [efcf1570] + Setfield v1.1.2
  [605ecd9f] + ShowCases v0.1.0
  [777ac1f9] + SimpleBufferStream v1.2.0
  [699a6c99] + SimpleTraits v0.9.4
  [a2af1166] + SortingAlgorithms v1.2.1
  [dc90abb0] + SparseInverseSubset v0.1.2
  [276daf66] + SpecialFunctions v2.5.1
  [171d559e] + SplittablesBase v0.1.15
  [aedffcd0] + Static v1.2.0
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
  [9700d1a9] + StrTables v1.0.1
⌅ [4db3bf67] + StridedViews v0.2.2
  [69024149] + StringEncodings v0.3.7
  [354b36f9] + StringViews v1.3.4
⌃ [09ab397b] + StructArrays v0.6.18
  [856f2bd8] + StructTypes v1.11.0
  [31cdf514] + StructWalk v0.2.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [f92c20c0] + TextEncodeBase v0.8.3
  [3bb67fe8] + TranscodingStreams v0.11.3
  [28d57a85] + Transducers v0.4.84
  [21ca0261] + Transformers v0.3.1
  [410a4b4d] + Tricks v0.1.10
  [5c2747f8] + URIs v1.5.2
  [013be700] + UnsafeAtomics v0.3.0
  [0625e100] + ValSplit v0.1.1
  [796a5d58] + WordTokenizers v0.5.6
  [a5390f91] + ZipFile v0.10.1
⌅ [e88e6eb3] + Zygote v0.6.76
  [700de1a5] + ZygoteRules v0.2.7
  [dad2f222] + LLVMExtra_jll v0.0.35+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [c8ffd9c3] + MbedTLS_jll v2.28.6+2
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
⌅ [02c8fc9c] + XML2_jll v2.13.6+1
  [2a13b4fb] + rure_jll v0.2.2+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.12.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.12.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2024.12.31
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.0.16+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.12.0+0
  [8e850ede] + nghttp2_jll v1.65.0+0
  [3f19e933] + p7zip_jll v17.5.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
    Building HTML_Entities → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/c4144ed3bc5f67f595622ad03c0e39fa6c70ccc7/build.log`

Installation completed after 10.28s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
   2831.0 ms  ✓ MLDataDevices → MLDataDevicesChainRulesExt
           ✗ JLD2
   9934.6 ms  ✓ GPUArrays
  21620.7 ms  ✓ NeuralAttentionlib
   3702.0 ms  ✓ OneHotArrays
  46666.4 ms  ✓ MLDataDevices → MLDataDevicesMLUtilsExt
  10219.6 ms  ✓ MLDataDevices → MLDataDevicesGPUArraysExt
           ✗ Zygote
   8083.7 ms  ✓ PrimitiveOneHot → PrimitiveOneHotGPUArraysExt
  29569.2 ms  ✓ NeuralAttentionlib → NeuralAttentionlibGPUArraysExt
  22154.2 ms  ✓ MLDataDevices → MLDataDevicesOneHotArraysExt
   8467.1 ms  ✓ PrimitiveOneHot → PrimitiveOneHotOneHotArraysExt
           ✗ MLDataDevices → MLDataDevicesZygoteExt
           ✗ NeuralAttentionlib → NeuralAttentionlibZygoteExt
           ✗ Flux
           ✗ Transformers
           ✗ ColBERT
  10 dependencies successfully precompiled in 531 seconds. 222 already precompiled.

ERROR: LoadError: The following 1 direct dependency failed to precompile:

ColBERT 

Failed to precompile ColBERT [7e8ad7a6-05a9-45be-b784-576440ebc08e] to "/home/pkgeval/.julia/compiled/v1.13/ColBERT/jl_bJepjN" (ProcessExited(1)).
WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import.
  NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Variable end`.
  Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`.
WARNING: Imported binding InteractiveUtils.typesof was undeclared at import time during import to Zygote.
ERROR: LoadError: UndefVarError: `typesof` not defined in `Zygote`
Suggestion: this global was defined as `InteractiveUtils.typesof` but not assigned a value.
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/Zygote/1GK3J/src/precompile.jl:13
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
  [3] IncludeInto
    @ ./Base.jl:305 [inlined]
  [4] macro expansion
    @ ~/.julia/packages/Requires/1eCOK/src/Requires.jl:40 [inlined]
  [5] precompile()
    @ Zygote ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:63
  [6] top-level scope
    @ ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:84
  [7] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
  [8] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
  [9] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2978
 [10] top-level scope
    @ stdin:5
 [11] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [13] include_string
    @ ./loading.jl:2834 [inlined]
 [14] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [15] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/precompile.jl:13
in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/Zygote.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.13/Zygote/jl_SBjQZ6" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/Flux/vwk6M/src/Flux.jl:16
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/Flux/vwk6M/src/Flux.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile Flux [587475ba-b771-5e3f-ad9e-33799f191a9c] to "/home/pkgeval/.julia/compiled/v1.13/Flux/jl_RR1UfF" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/ColBERT/HkmpQ/src/ColBERT.jl:3
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/ColBERT/HkmpQ/src/ColBERT.jl:1
in expression starting at stdin:
in expression starting at /PkgEval.jl/scripts/precompile.jl:37

Precompilation failed after 538.6s



################################################################################
# Loading
#

Loading ColBERT...
Precompiling packages...
           ✗ JLD2
           ✗ Zygote
  25578.4 ms  ✓ MLDataDevices → MLDataDevicesOneHotArraysExt
  30242.0 ms  ✓ MLDataDevices → MLDataDevicesMLUtilsExt
           ✗ MLDataDevices → MLDataDevicesZygoteExt
           ✗ NeuralAttentionlib → NeuralAttentionlibZygoteExt
  56460.9 ms  ? Flux
           ✗ Transformers
Info Given ColBERT was explicitly requested, output will be shown live 
WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import.
  NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Variable end`.
  Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`.
WARNING: Imported binding InteractiveUtils.typesof was undeclared at import time during import to Zygote.
ERROR: LoadError: UndefVarError: `typesof` not defined in `Zygote`
Suggestion: this global was defined as `InteractiveUtils.typesof` but not assigned a value.
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/Zygote/1GK3J/src/precompile.jl:13
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
  [3] IncludeInto
    @ ./Base.jl:305 [inlined]
  [4] macro expansion
    @ ~/.julia/packages/Requires/1eCOK/src/Requires.jl:40 [inlined]
  [5] precompile()
    @ Zygote ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:63
  [6] top-level scope
    @ ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:84
  [7] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
  [8] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
  [9] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2978
 [10] top-level scope
    @ stdin:5
 [11] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [13] include_string
    @ ./loading.jl:2834 [inlined]
 [14] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [15] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/precompile.jl:13
in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/Zygote.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.13/Zygote/jl_qy6gmF" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/Flux/vwk6M/src/Flux.jl:16
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/Flux/vwk6M/src/Flux.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile Flux [587475ba-b771-5e3f-ad9e-33799f191a9c] to "/home/pkgeval/.julia/compiled/v1.13/Flux/jl_u41Z9S" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/ColBERT/HkmpQ/src/ColBERT.jl:3
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/ColBERT/HkmpQ/src/ColBERT.jl:1
in expression starting at stdin:5
           ✗ ColBERT
  2 dependencies successfully precompiled in 377 seconds. 230 already precompiled.
  1 dependencies failed but may be precompilable after restarting julia
  1 dependency had output during precompilation:
┌ Flux
│  WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Statistics.cov), SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) in module SparseArraysExt at /home/pkgeval/.julia/packages/Statistics/gbcbG/ext/SparseArraysExt.jl:14 overwritten in module SparseArraysExt on the same line (check for duplicate calls to `include`).
│  ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
└  

ERROR: The following 1 direct dependency failed to precompile:

ColBERT 

Failed to precompile ColBERT [7e8ad7a6-05a9-45be-b784-576440ebc08e] to "/home/pkgeval/.julia/compiled/v1.13/ColBERT/jl_yPAHJR" (ProcessExited(1)).
WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import.
  NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Variable end`.
  Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`.
WARNING: Imported binding InteractiveUtils.typesof was undeclared at import time during import to Zygote.
ERROR: LoadError: UndefVarError: `typesof` not defined in `Zygote`
Suggestion: this global was defined as `InteractiveUtils.typesof` but not assigned a value.
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/Zygote/1GK3J/src/precompile.jl:13
  [2] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
  [3] IncludeInto
    @ ./Base.jl:305 [inlined]
  [4] macro expansion
    @ ~/.julia/packages/Requires/1eCOK/src/Requires.jl:40 [inlined]
  [5] precompile()
    @ Zygote ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:63
  [6] top-level scope
    @ ~/.julia/packages/Zygote/1GK3J/src/Zygote.jl:84
  [7] macro expansion
    @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]
  [8] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
  [9] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2978
 [10] top-level scope
    @ stdin:5
 [11] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [12] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [13] include_string
    @ ./loading.jl:2834 [inlined]
 [14] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [15] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/precompile.jl:13
in expression starting at /home/pkgeval/.julia/packages/Zygote/1GK3J/src/Zygote.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.13/Zygote/jl_qy6gmF" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/Flux/vwk6M/src/Flux.jl:16
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/Flux/vwk6M/src/Flux.jl:1
in expression starting at stdin:5
ERROR: LoadError: Failed to precompile Flux [587475ba-b771-5e3f-ad9e-33799f191a9c] to "/home/pkgeval/.julia/compiled/v1.13/Flux/jl_u41Z9S" (ProcessExited(1)).
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base ./loading.jl:3265
  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()
    @ Base ./loading.jl:2651
  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93
  [5] #mkpidlock#7
    @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114
  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})
    @ Base ./reflection.jl:1279
  [8] #invokelatest_gr#234
    @ ./reflection.jl:1287 [inlined]
  [9] invokelatest_gr
    @ ./reflection.jl:1281 [inlined]
 [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base ./loading.jl:3836
 [11] maybe_cachefile_lock
    @ ./loading.jl:3833 [inlined]
 [12] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2637
 [13] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2465
 [14] macro expansion
    @ ./loading.jl:2393 [inlined]
 [15] macro expansion
    @ ./lock.jl:376 [inlined]
 [16] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2358
 [17] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2334
 [18] top-level scope
    @ ~/.julia/packages/ColBERT/HkmpQ/src/ColBERT.jl:3
 [19] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2978
 [21] top-level scope
    @ stdin:5
 [22] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2824
 [24] include_string
    @ ./loading.jl:2834 [inlined]
 [25] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:329
 [26] _start()
    @ Base ./client.jl:563
in expression starting at /home/pkgeval/.julia/packages/ColBERT/HkmpQ/src/ColBERT.jl:1
in expression starting at stdin:

Loading failed after 375.03s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using ColBERT'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:602 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:517
 [3] run(::Cmd)
   @ Base ./process.jl:514
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:303
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:331
 [7] _start()
   @ Base ./client.jl:563
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 958.73s: illegal method overwrites during precompilation