Package evaluation of Coalescent on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T13:22:24.996


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# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 7.79s


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# Installation
#

Installing Coalescent...
   Resolving package versions...
    Updating `~/.julia/environments/v1.13/Project.toml`
  [7af52d38] + Coalescent v0.1.4
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [47edcb42] + ADTypes v1.14.0
  [a4c015fc] + ANSIColoredPrinters v0.0.1
  [1520ce14] + AbstractTrees v0.4.5
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [ec485272] + ArnoldiMethod v0.4.0
  [4fba245c] + ArrayInterface v7.18.0
  [4c555306] + ArrayLayouts v1.11.1
  [13072b0f] + AxisAlgorithms v1.1.0
  [d1d4a3ce] + BitFlags v0.1.9
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [70df07ce] + BracketingNonlinearSolve v1.2.0
  [2a0fbf3d] + CPUSummary v0.2.6
  [336ed68f] + CSV v0.10.15
  [d360d2e6] + ChainRulesCore v1.25.1
  [fb6a15b2] + CloseOpenIntervals v0.1.13
  [7af52d38] + Coalescent v0.1.4
  [944b1d66] + CodecZlib v0.7.8
  [35d6a980] + ColorSchemes v3.29.0
  [3da002f7] + ColorTypes v0.12.1
  [c3611d14] + ColorVectorSpace v0.11.0
  [5ae59095] + Colors v0.13.0
  [38540f10] + CommonSolve v0.2.4
  [bbf7d656] + CommonSubexpressions v0.3.1
  [f70d9fcc] + CommonWorldInvalidations v1.0.0
  [34da2185] + Compat v4.16.0
  [a33af91c] + CompositionsBase v0.1.2
  [2569d6c7] + ConcreteStructs v0.2.3
  [f0e56b4a] + ConcurrentUtilities v2.5.0
  [187b0558] + ConstructionBase v1.5.8
  [d38c429a] + Contour v0.6.3
  [adafc99b] + CpuId v0.3.1
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [2b5f629d] + DiffEqBase v6.170.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [a0c0ee7d] + DifferentiationInterface v0.6.52
  [31c24e10] + Distributions v0.25.119
  [ffbed154] + DocStringExtensions v0.9.4
  [e30172f5] + Documenter v1.10.2
  [4e289a0a] + EnumX v1.0.5
  [f151be2c] + EnzymeCore v0.8.8
  [460bff9d] + ExceptionUnwrapping v0.1.11
  [d4d017d3] + ExponentialUtilities v1.27.0
  [e2ba6199] + ExprTools v0.1.10
  [55351af7] + ExproniconLite v0.10.14
  [c87230d0] + FFMPEG v0.4.2
  [7034ab61] + FastBroadcast v0.3.5
  [9aa1b823] + FastClosures v0.3.2
  [442a2c76] + FastGaussQuadrature v1.0.2
  [a4df4552] + FastPower v1.1.2
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.13.0
  [6a86dc24] + FiniteDiff v2.27.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [1fa38f19] + Format v1.3.7
⌅ [f6369f11] + ForwardDiff v0.10.38
  [069b7b12] + FunctionWrappers v1.1.3
  [77dc65aa] + FunctionWrappersWrappers v0.1.3
  [46192b85] + GPUArraysCore v0.2.0
  [28b8d3ca] + GR v0.73.14
  [c145ed77] + GenericSchur v0.5.5
  [d7ba0133] + Git v1.3.1
  [86223c79] + Graphs v1.12.1
  [42e2da0e] + Grisu v1.0.2
  [cd3eb016] + HTTP v1.10.16
  [34004b35] + HypergeometricFunctions v0.3.28
  [b5f81e59] + IOCapture v0.2.5
  [615f187c] + IfElse v0.1.1
  [d25df0c9] + Inflate v0.1.5
  [842dd82b] + InlineStrings v1.4.3
  [a98d9a8b] + Interpolations v0.15.1
  [3587e190] + InverseFunctions v0.1.17
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [1019f520] + JLFzf v0.1.11
  [692b3bcd] + JLLWrappers v1.7.0
  [682c06a0] + JSON v0.21.4
  [ae98c720] + Jieko v0.2.1
  [ccbc3e58] + JumpProcesses v9.14.3
  [ba0b0d4f] + Krylov v0.10.0
  [b964fa9f] + LaTeXStrings v1.4.0
  [23fbe1c1] + Latexify v0.16.7
  [10f19ff3] + LayoutPointers v0.1.17
  [0e77f7df] + LazilyInitializedFields v1.3.0
  [5078a376] + LazyArrays v2.6.1
  [87fe0de2] + LineSearch v0.1.4
  [d3d80556] + LineSearches v7.3.0
  [7ed4a6bd] + LinearSolve v3.9.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e6f89c97] + LoggingExtras v1.1.0
  [1914dd2f] + MacroTools v0.5.16
  [d125e4d3] + ManualMemory v0.1.8
  [d0879d2d] + MarkdownAST v0.1.2
  [bb5d69b7] + MaybeInplace v0.1.4
  [739be429] + MbedTLS v1.1.9
  [442fdcdd] + Measures v0.3.2
  [e1d29d7a] + Missings v1.2.0
  [2e0e35c7] + Moshi v0.3.5
  [46d2c3a1] + MuladdMacro v0.2.4
  [d41bc354] + NLSolversBase v7.9.1
  [77ba4419] + NaNMath v1.1.3
  [8913a72c] + NonlinearSolve v4.8.0
  [be0214bd] + NonlinearSolveBase v1.6.0
  [5959db7a] + NonlinearSolveFirstOrder v1.4.0
  [9a2c21bd] + NonlinearSolveQuasiNewton v1.3.0
  [26075421] + NonlinearSolveSpectralMethods v1.2.0
  [6fe1bfb0] + OffsetArrays v1.17.0
  [4d8831e6] + OpenSSL v1.4.3
  [bac558e1] + OrderedCollections v1.8.0
  [1dea7af3] + OrdinaryDiffEq v6.95.1
  [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.2.0
  [6ad6398a] + OrdinaryDiffEqBDF v1.5.0
  [bbf590c4] + OrdinaryDiffEqCore v1.23.0
  [50262376] + OrdinaryDiffEqDefault v1.3.0
  [4302a76b] + OrdinaryDiffEqDifferentiation v1.7.0
  [9286f039] + OrdinaryDiffEqExplicitRK v1.1.0
  [e0540318] + OrdinaryDiffEqExponentialRK v1.4.0
  [becaefa8] + OrdinaryDiffEqExtrapolation v1.5.0
  [5960d6e9] + OrdinaryDiffEqFIRK v1.10.0
  [101fe9f7] + OrdinaryDiffEqFeagin v1.1.0
  [d3585ca7] + OrdinaryDiffEqFunctionMap v1.1.1
  [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.1.0
  [9f002381] + OrdinaryDiffEqIMEXMultistep v1.3.0
  [521117fe] + OrdinaryDiffEqLinear v1.1.0
  [1344f307] + OrdinaryDiffEqLowOrderRK v1.2.0
  [b0944070] + OrdinaryDiffEqLowStorageRK v1.3.0
  [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.6.1
  [c9986a66] + OrdinaryDiffEqNordsieck v1.1.0
  [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.3.0
  [5b33eab2] + OrdinaryDiffEqPRK v1.1.0
  [04162be5] + OrdinaryDiffEqQPRK v1.1.0
  [af6ede74] + OrdinaryDiffEqRKN v1.1.0
  [43230ef6] + OrdinaryDiffEqRosenbrock v1.9.0
  [2d112036] + OrdinaryDiffEqSDIRK v1.3.0
  [669c94d9] + OrdinaryDiffEqSSPRK v1.3.0
  [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.3.0
  [358294b1] + OrdinaryDiffEqStabilizedRK v1.1.0
  [fa646aed] + OrdinaryDiffEqSymplecticRK v1.3.0
  [b1df2697] + OrdinaryDiffEqTsit5 v1.1.0
  [79d7bb75] + OrdinaryDiffEqVerner v1.2.0
  [90014a1f] + PDMats v0.11.34
  [d96e819e] + Parameters v0.12.3
  [69de0a69] + Parsers v2.8.3
  [ccf2f8ad] + PlotThemes v3.3.0
  [995b91a9] + PlotUtils v1.4.3
  [91a5bcdd] + Plots v1.40.13
  [e409e4f3] + PoissonRandom v0.4.4
  [f517fe37] + Polyester v0.7.16
  [1d0040c9] + PolyesterWeave v0.2.2
  [2dfb63ee] + PooledArrays v1.4.3
  [d236fae5] + PreallocationTools v0.4.26
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
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  [992d4aef] + Showoff v1.0.3
  [777ac1f9] + SimpleBufferStream v1.2.0
  [727e6d20] + SimpleNonlinearSolve v2.3.0
  [699a6c99] + SimpleTraits v0.9.4
  [ce78b400] + SimpleUnPack v1.1.0
  [a2af1166] + SortingAlgorithms v1.2.1
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  [aedffcd0] + Static v1.2.0
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  [10745b16] + Statistics v1.11.1
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  [4c63d2b9] + StatsFuns v1.5.0
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  [69024149] + StringEncodings v0.3.7
  [892a3eda] + StringManipulation v0.4.1
  [2efcf032] + SymbolicIndexingInterface v0.3.40
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [62fd8b95] + TensorCore v0.1.1
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  [a759f4b9] + TimerOutputs v0.5.28
  [3bb67fe8] + TranscodingStreams v0.11.3
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⌃ [83423d85] + Cairo_jll v1.18.4+0
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⌃ [7746bdde] + Glib_jll v2.82.4+0
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⌅ [e9f186c6] + Libffi_jll v3.2.2+2
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⌅ [c0090381] + Qt6Base_jll v6.7.1+1
⌅ [629bc702] + Qt6Declarative_jll v6.7.1+2
⌅ [ce943373] + Qt6ShaderTools_jll v6.7.1+1
⌃ [e99dba38] + Qt6Wayland_jll v6.7.1+1
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⌃ [a2964d1f] + Wayland_jll v1.21.0+2
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⌅ [02c8fc9c] + XML2_jll v2.13.6+1
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  [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0
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  [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.0+1
  [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.9+1
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        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 6.99s


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# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...

Precompilation completed after 1411.71s


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# Testing
#

     Testing Coalescent
      Status `/tmp/jl_KXi8DT/Project.toml`
  [336ed68f] CSV v0.10.15
  [7af52d38] Coalescent v0.1.4
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        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
WARNING: llvmcall with integer pointers is deprecated.
Use actual pointers instead, replacing i32 or i64 with i8* or ptr
in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl
Precompiling packages...
   8622.1 ms  ✓ Distributions → DistributionsTestExt
  1 dependency successfully precompiled in 10 seconds. 49 already precompiled.
WARNING: Detected access to binding `Coalescent.mododes!` in a world prior to its definition world.
  Julia 1.12 has introduced more strict world age semantics for global bindings.
  !!! This code may malfunction under Revise.
  !!! This code will error in future versions of Julia.
Hint: Add an appropriate `invokelatest` around the access to this binding.
WARNING: Method definition mododes!(Any, Any, Any, Any) in module Coalescent at /home/pkgeval/.julia/packages/Coalescent/g4isB/src/m0.jl:344 overwritten on the same line (check for duplicate calls to `include`).
┌ Warning: Coalescent process did not reach a common ancestor. Adding 9 nodes. 
└ @ Coalescent ~/.julia/packages/Coalescent/g4isB/src/s0.jl:39
WARNING: Method definition mododes!(Any, Any, Any, Any) in module Coalescent at /home/pkgeval/.julia/packages/Coalescent/g4isB/src/m0.jl:344 overwritten on the same line (check for duplicate calls to `include`).
WARNING: Method definition fneventrates!(Any, Any, Any, Any) in module Coalescent at /home/pkgeval/.julia/packages/Coalescent/g4isB/src/s0.jl:345 overwritten on the same line (check for duplicate calls to `include`).
┌ Warning: Coalescent process did not reach a common ancestor. Adding 4 nodes. 
└ @ Coalescent ~/.julia/packages/Coalescent/g4isB/src/s0.jl:39
Test Summary: | Pass  Total     Time
Coalescent.jl |   25     25  1m40.6s
     Testing Coalescent tests passed 

Testing completed after 210.02s

PkgEval succeeded after 1657.76s