Package evaluation of ClimaCalibrate on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T08:03:06.763 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.41s ################################################################################ # Installation # Installing ClimaCalibrate... Resolving package versions... Installed ClimaCalibrate ─ v0.0.15 Updating `~/.julia/environments/v1.13/Project.toml` [4347a170] + ClimaCalibrate v0.0.15 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [14f7f29c] + AMD v0.5.3 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.18.0 [13072b0f] + AxisAlgorithms v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.0 [d360d2e6] + ChainRulesCore v1.25.1 [4347a170] + ClimaCalibrate v0.0.15 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [f65535da] + Convex v0.16.4 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.52 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions 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v0.11.34 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [c946c3f1] + SCS v2.1.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.5.0 [69024149] + StringEncodings v0.3.7 [856f2bd8] + StructTypes v1.11.0 [9449cd9e] + TSVD v0.4.4 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [efce3f68] + WoodburyMatrices v1.0.0 [ddb6d928] + YAML v0.4.13 ⌅ [68821587] + Arpack_jll v3.5.1+1 [6e34b625] + Bzip2_jll v1.0.9+0 ⌃ 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[8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 5.57s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 399.49s ################################################################################ # Testing # Testing ClimaCalibrate Status `/tmp/jl_xI3Ylt/Project.toml` [4c88cf16] Aqua v0.8.11 [4347a170] ClimaCalibrate v0.0.15 [5c42b081] ClimaParams v0.10.28 [8f4d0f93] Conda v1.10.2 [31c24e10] Distributions v0.25.119 [aa8a2aa5] EnsembleKalmanProcesses v2.4.1 [033835bb] JLD2 v0.5.13 [1bc83da4] SafeTestsets v0.1.0 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_xI3Ylt/Manifest.toml` [47edcb42] ADTypes v1.14.0 [14f7f29c] AMD v0.5.3 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.11 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.18.0 [13072b0f] AxisAlgorithms v1.1.0 [6e4b80f9] BenchmarkTools v1.6.0 [d360d2e6] ChainRulesCore v1.25.1 [4347a170] ClimaCalibrate v0.0.15 [5c42b081] ClimaParams v0.10.28 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [8f4d0f93] Conda v1.10.2 [187b0558] ConstructionBase v1.5.8 [f65535da] Convex v0.16.4 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.52 [31c24e10] Distributions v0.25.119 [ffbed154] DocStringExtensions v0.9.4 [aa8a2aa5] EnsembleKalmanProcesses v2.4.1 [4e289a0a] EnumX v1.0.5 [c87230d0] FFMPEG v0.4.2 [7a1cc6ca] FFTW v1.8.1 [442a2c76] FastGaussQuadrature v1.0.2 [5789e2e9] FileIO v1.17.0 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [f6369f11] ForwardDiff v1.0.1 [e4b2fa32] GaussianRandomFields v2.2.6 [34004b35] HypergeometricFunctions v0.3.28 [a98d9a8b] Interpolations v0.15.1 [92d709cd] IrrationalConstants v0.2.4 [033835bb] JLD2 v0.5.13 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.2 [40e66cde] LDLFactorizations v0.10.1 [d3d80556] LineSearches v7.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.39.0 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.6.4 [d41bc354] NLSolversBase v7.9.1 [77ba4419] NaNMath v1.1.3 [6fe1bfb0] OffsetArrays v1.17.0 [429524aa] Optim v1.12.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.34 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [c946c3f1] SCS v2.1.0 [1bc83da4] SafeTestsets v0.1.0 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 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[7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: For 2 parameters, the recommended minimum ensemble size (`N_ens`) is 20. Got `N_ens` = 10`. └ @ EnsembleKalmanProcesses ~/.julia/packages/EnsembleKalmanProcesses/AwvFd/src/EnsembleKalmanProcess.jl:251 ┌ Warning: For 2 parameters, the recommended minimum ensemble size (`N_ens`) is 20. Got `N_ens` = 10`. └ @ EnsembleKalmanProcesses ~/.julia/packages/EnsembleKalmanProcesses/AwvFd/src/EnsembleKalmanProcess.jl:251 ┌ Warning: Attempting to store EnsembleKalmanProcesses.var"#failsafe_update#FailureHandler##1". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.Localizers.var"#Localizer##12#Localizer##13"{EnsembleKalmanProcesses.Localizers.SECNice{Float64}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: For 2 parameters, the recommended minimum ensemble size (`N_ens`) is 20. Got `N_ens` = 10`. └ @ EnsembleKalmanProcesses ~/.julia/packages/EnsembleKalmanProcesses/AwvFd/src/EnsembleKalmanProcess.jl:251 ┌ Warning: Attempting to store EnsembleKalmanProcesses.var"#failsafe_update#FailureHandler##1". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.Localizers.var"#Localizer##12#Localizer##13"{EnsembleKalmanProcesses.Localizers.SECNice{Float64}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 Test Summary: | Pass Total Time Test passing kwargs to EKP struct | 4 4 1.8s Test Summary: | Pass Total Time Test that a user-constructed EKP obj is same as initialized one | 14 14 2.3s Test Summary: | Pass Total Time Initialized parameter values | 2 2 0.0s ┌ Warning: Recommended minimum ensemble size (`N_ens`) is 10. Got `N_ens` = 5. └ @ EnsembleKalmanProcesses ~/.julia/packages/EnsembleKalmanProcesses/AwvFd/src/EnsembleKalmanProcess.jl:249 ┌ Warning: Attempting to store EnsembleKalmanProcesses.var"#failsafe_update#FailureHandler##1". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.Localizers.var"#Localizer##12#Localizer##13"{EnsembleKalmanProcesses.Localizers.SECNice{Float64}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 Test Summary: | Pass Total Time Test passing an EKP struct into `initialize` | 2 2 3.7s Test Summary: | Pass Total Time Environment variables | 8 8 0.5s ┌ Error: Exception while generating log record in module ClimaCalibrate at /home/pkgeval/.julia/packages/ClimaCalibrate/GDCRV/src/model_interface.jl:40 │ exception = │ MethodError: no method matching get_ϕ_mean_final(::Int64, ::Int64) │ The function `get_ϕ_mean_final` exists, but no method is defined for this combination of argument types. │ │ Closest candidates are: │ get_ϕ_mean_final(!Matched::ParameterDistribution, !Matched::EnsembleKalmanProcesses.EnsembleKalmanProcess) │ @ EnsembleKalmanProcesses ~/.julia/packages/EnsembleKalmanProcesses/AwvFd/src/EnsembleKalmanProcess.jl:567 │ │ Stacktrace: │ [1] macro expansion │ @ ./logging/logging.jl:385 [inlined] │ [2] analyze_iteration(ekp::Int64, g_ensemble::Int64, prior::Int64, output_dir::Int64, iteration::Int64) │ @ ClimaCalibrate ~/.julia/packages/ClimaCalibrate/GDCRV/src/model_interface.jl:40 │ [3] top-level scope │ @ ~/.julia/packages/ClimaCalibrate/GDCRV/test/model_interface.jl:12 │ [4] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1835 [inlined] │ [5] macro expansion │ @ ~/.julia/packages/ClimaCalibrate/GDCRV/test/model_interface.jl:19 [inlined] │ [6] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 [inlined] │ [7] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:304 │ [8] top-level scope │ @ ~/.julia/packages/ClimaCalibrate/GDCRV/test/runtests.jl:4 │ [9] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:304 │ [10] top-level scope │ @ none:6 │ [11] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [12] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:297 │ [13] _start() │ @ Base ./client.jl:563 └ @ ClimaCalibrate ~/.julia/packages/ClimaCalibrate/GDCRV/src/model_interface.jl:40 ┌ Error: Exception while generating log record in module ClimaCalibrate at /home/pkgeval/.julia/packages/ClimaCalibrate/GDCRV/src/model_interface.jl:41 │ exception = │ MethodError: no method matching get_error(::Int64) │ The function `get_error` exists, but no method is defined for this combination of argument types. │ │ Closest candidates are: │ get_error(!Matched::EnsembleKalmanProcesses.EnsembleKalmanProcess) │ @ EnsembleKalmanProcesses ~/.julia/packages/EnsembleKalmanProcesses/AwvFd/src/EnsembleKalmanProcess.jl:851 │ │ Stacktrace: │ [1] macro expansion │ @ ./logging/logging.jl:385 [inlined] │ [2] analyze_iteration(ekp::Int64, g_ensemble::Int64, prior::Int64, output_dir::Int64, iteration::Int64) │ @ ClimaCalibrate ~/.julia/packages/ClimaCalibrate/GDCRV/src/model_interface.jl:41 │ [3] top-level scope │ @ ~/.julia/packages/ClimaCalibrate/GDCRV/test/model_interface.jl:12 │ [4] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1835 [inlined] │ [5] macro expansion │ @ ~/.julia/packages/ClimaCalibrate/GDCRV/test/model_interface.jl:19 [inlined] │ [6] macro expansion │ @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:728 [inlined] │ [7] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:304 │ [8] top-level scope │ @ ~/.julia/packages/ClimaCalibrate/GDCRV/test/runtests.jl:4 │ [9] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:304 │ [10] top-level scope │ @ none:6 │ [11] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [12] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:297 │ [13] _start() │ @ Base ./client.jl:563 └ @ ClimaCalibrate ~/.julia/packages/ClimaCalibrate/GDCRV/src/model_interface.jl:41 Test Summary: | Pass Total Time Model Interface stubs | 4 4 5.7s WARNING: Method definition forward_model(Any, Any) in module ClimaCalibrate at /home/pkgeval/.julia/packages/ClimaCalibrate/GDCRV/src/model_interface.jl:14 overwritten in module Main at /home/pkgeval/.julia/packages/ClimaCalibrate/GDCRV/test/julia_backend.jl:32. WARNING: Method definition observation_map(Any) in module ClimaCalibrate at /home/pkgeval/.julia/packages/ClimaCalibrate/GDCRV/src/model_interface.jl:24 overwritten in module Main at /home/pkgeval/.julia/packages/ClimaCalibrate/GDCRV/test/julia_backend.jl:40. WARNING: Method definition analyze_iteration(Any, Any, Any, Any, Any) in module ClimaCalibrate at /home/pkgeval/.julia/packages/ClimaCalibrate/GDCRV/src/model_interface.jl:39 overwritten in module Main at /home/pkgeval/.julia/packages/ClimaCalibrate/GDCRV/test/julia_backend.jl:53. ┌ Warning: Attempting to store EnsembleKalmanProcesses.var"#failsafe_update#FailureHandler##1". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.Localizers.var"#Localizer##12#Localizer##13"{EnsembleKalmanProcesses.Localizers.SECNice{Float64}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 [ Info: Running iteration 0 [ Info: Completed member 1 [ Info: Completed member 2 [ Info: Completed member 3 [ Info: Completed member 4 [ Info: Completed member 5 [ Info: Completed member 6 [ Info: Completed member 7 [ Info: Completed member 8 [ Info: Completed member 9 [ Info: Completed member 10 [ Info: Completed member 11 [ Info: Completed member 12 [ Info: Completed member 13 [ Info: Completed member 14 [ Info: Completed member 15 [ Info: Completed member 16 [ Info: Completed member 17 [ Info: Completed member 18 [ Info: Completed member 19 [ Info: Completed member 20 ┌ Warning: Attempting to store EnsembleKalmanProcesses.var"#failsafe_update#FailureHandler##1". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store EnsembleKalmanProcesses.Localizers.var"#Localizer##12#Localizer##13"{EnsembleKalmanProcesses.Localizers.SECNice{Float64}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/pdSa4/src/data/writing_datatypes.jl:447 [ Info: Analyzing iteration [ Info: Iteration 0 [ Info: Current mean constrained parameter: [11.890996751935917] [ Info: g_ensemble: [6.094968389794512 9.493862985572898 8.715774521724276 9.391511923937948 8.091744629791108 29.92011799047429 8.988697045780325 6.426822277756606 6.035169240339625 4.49200984712414 5.94346710983317 12.862250949389223 18.31036875486078 3.8315245113340275 5.614773315551747 11.189930693840092 5.3230312944173335 12.317704712766282 4.790384492665976 20.708505956565325] [ Info: output_dir: /tmp/jl_QlqAYh Test Summary: | Pass Total Time Test end-to-end calibration | 2 2 0.4s Test Summary: | Pass Total Time Aqua tests (performance) | 2 2 2.0s Test Summary: | Pass Total Time Aqua tests (additional) | 8 8 41.6s Testing ClimaCalibrate tests passed Testing completed after 359.56s PkgEval succeeded after 794.6s