Package evaluation of BulkLMM on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T05:57:59.060 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.16s ################################################################################ # Installation # Installing BulkLMM... Resolving package versions... Installed Crayons ───────────────────── v4.1.1 Installed IrrationalConstants ───────── v0.2.4 Installed Rmath ─────────────────────── v0.8.0 Installed Adapt ─────────────────────── v4.3.0 Installed HypergeometricFunctions ───── v0.3.28 Installed DiffRules ─────────────────── v1.15.1 Installed PtrArrays ─────────────────── v1.3.0 Installed TableTraits ───────────────── v1.0.1 Installed DiffResults ───────────────── v1.1.0 Installed Preferences ───────────────── v1.4.3 Installed StatsFuns ─────────────────── v1.5.0 Installed PrettyTables ──────────────── v2.4.0 Installed PositiveFactorizations ────── v0.2.4 Installed SentinelArrays ────────────── v1.4.8 Installed Parsers ───────────────────── v2.8.3 Installed ADTypes ───────────────────── v1.14.0 Installed Tables ────────────────────── v1.12.0 Installed PDMats ────────────────────── v0.11.34 Installed SpecialFunctions ──────────── v2.5.1 Installed DataAPI ───────────────────── v1.16.0 Installed Setfield ──────────────────── v1.1.2 Installed PooledArrays ──────────────── v1.4.3 Installed InlineStrings ─────────────── v1.4.3 Installed JLLWrappers ───────────────── v1.7.0 Installed StaticArraysCore ──────────── v1.4.3 Installed NaNMath ───────────────────── v1.1.3 Installed DataValueInterfaces ───────── v1.0.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed ConstructionBase ──────────── v1.5.8 Installed OrderedCollections ────────── v1.8.0 Installed Optim ─────────────────────── v1.12.0 Installed PrecompileTools ───────────── v1.3.2 Installed EnumX ─────────────────────── v1.0.5 Installed WorkerUtilities ───────────── v1.6.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed TranscodingStreams ────────── v0.11.3 Installed NLSolversBase ─────────────── v7.9.1 Installed InvertedIndices ───────────── v1.3.1 Installed DelimitedFiles ────────────── v1.9.1 Installed ArrayInterface ────────────── v7.18.0 Installed FilePathsBase ─────────────── v0.9.24 Installed ForwardDiff ───────────────── v1.0.1 Installed QuadGK ────────────────────── v2.11.2 Installed FillArrays ────────────────── v1.13.0 Installed Reexport ──────────────────── v1.2.2 Installed LineSearches ──────────────── v7.3.0 Installed DataFrames ────────────────── v1.7.0 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed WeakRefStrings ────────────── v1.4.2 Installed Statistics ────────────────── v1.11.1 Installed CommonSubexpressions ──────── v0.3.1 Installed DataStructures ────────────── v0.18.22 Installed Requires ──────────────────── v1.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed AliasTables ───────────────── v1.1.3 Installed MacroTools ────────────────── v0.5.16 Installed StatsAPI ──────────────────── v1.7.0 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Compat ────────────────────── v4.16.0 Installed UnPack ────────────────────── v1.0.2 Installed Parameters ────────────────── v0.12.3 Installed CodecZlib ─────────────────── v0.7.8 Installed Missings ──────────────────── v1.2.0 Installed StringManipulation ────────── v0.4.1 Installed SortingAlgorithms ─────────── v1.2.1 Installed StatsBase ─────────────────── v0.34.4 Installed Distributions ─────────────── v0.25.119 Installed DocStringExtensions ───────── v0.9.4 Installed FiniteDiff ────────────────── v2.27.0 Installed DifferentiationInterface ──── v0.6.52 Installed CSV ───────────────────────── v0.10.15 Installed BulkLMM ───────────────────── v1.2.0 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.13/Project.toml` [b8d15608] + BulkLMM v1.2.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.18.0 [b8d15608] + BulkLMM v1.2.0 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.52 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v1.0.1 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [b964fa9f] + LaTeXStrings v1.4.0 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.9.1 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.34 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.5.0 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 Installation completed after 10.74s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5477.0 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 363.76s ################################################################################ # Testing # Testing BulkLMM Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_ipIKAF/Project.toml` [b8d15608] + BulkLMM v1.2.0 [336ed68f] ↑ CSV v0.10.11 ⇒ v0.10.15 [a93c6f00] ↑ DataFrames v1.6.1 ⇒ v1.7.0 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] ↑ Distributions v0.25.98 ⇒ v0.25.119 [10745b16] + Statistics v1.11.1 [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0 [9a3f8284] ~ Random ⇒ v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_ipIKAF/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.18.0 [b8d15608] + BulkLMM v1.2.0 [336ed68f] ↑ CSV v0.10.11 ⇒ v0.10.15 [49dc2e85] - Calculus v0.5.1 [d360d2e6] - ChainRulesCore v1.16.0 [9e997f8a] - ChangesOfVariables v0.1.8 [944b1d66] ↑ CodecZlib v0.7.2 ⇒ v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] ↑ Compat v4.7.0 ⇒ v4.16.0 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] ↑ DataAPI v1.15.0 ⇒ v1.16.0 [a93c6f00] ↑ DataFrames v1.6.1 ⇒ v1.7.0 [864edb3b] ↑ DataStructures v0.18.14 ⇒ v0.18.22 [8bb1440f] + DelimitedFiles v1.9.1 [b429d917] - DensityInterface v0.4.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.52 [31c24e10] ↑ Distributions v0.25.98 ⇒ v0.25.119 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.4 [fa6b7ba4] - DualNumbers v0.6.8 [4e289a0a] + EnumX v1.0.5 [48062228] ↑ FilePathsBase v0.9.20 ⇒ v0.9.24 [1a297f60] ↑ FillArrays v1.4.2 ⇒ v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [59287772] - Formatting v0.4.2 [f6369f11] + ForwardDiff v1.0.1 [34004b35] ↑ HypergeometricFunctions v0.3.21 ⇒ v0.3.28 [842dd82b] ↑ InlineStrings v1.4.0 ⇒ v1.4.3 [3587e190] - InverseFunctions v0.1.11 [41ab1584] ↑ InvertedIndices v1.3.0 ⇒ v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.4 [692b3bcd] ↑ JLLWrappers v1.4.1 ⇒ v1.7.0 [b964fa9f] ↑ LaTeXStrings v1.3.0 ⇒ v1.4.0 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] ↑ LogExpFunctions v0.3.24 ⇒ v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] ↑ Missings v1.1.0 ⇒ v1.2.0 [d41bc354] + NLSolversBase v7.9.1 [77ba4419] ↑ NaNMath v1.0.2 ⇒ v1.1.3 [429524aa] + Optim v1.12.0 [bac558e1] ↑ OrderedCollections v1.6.2 ⇒ v1.8.0 [90014a1f] ↑ PDMats v0.11.17 ⇒ v0.11.34 [d96e819e] + Parameters v0.12.3 [69de0a69] ↑ Parsers v2.7.1 ⇒ v2.8.3 [2dfb63ee] ↑ PooledArrays v1.4.2 ⇒ v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] ↑ PrecompileTools v1.1.2 ⇒ v1.3.2 [21216c6a] ↑ Preferences v1.4.0 ⇒ v1.4.3 [08abe8d2] ↑ PrettyTables v2.2.6 ⇒ v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] ↑ QuadGK v2.8.2 ⇒ v2.11.2 [ae029012] + Requires v1.3.1 [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.8.0 [91c51154] ↑ SentinelArrays v1.4.0 ⇒ v1.4.8 [efcf1570] + Setfield v1.1.2 [a2af1166] ↑ SortingAlgorithms v1.1.1 ⇒ v1.2.1 [276daf66] ↑ SpecialFunctions v2.3.0 ⇒ v2.5.1 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] ↑ StatsAPI v1.6.0 ⇒ v1.7.0 [2913bbd2] ↑ StatsBase v0.34.0 ⇒ v0.34.4 [4c63d2b9] ↑ StatsFuns v1.3.0 ⇒ v1.5.0 [892a3eda] ↑ StringManipulation v0.3.0 ⇒ v0.4.1 [bd369af6] ↑ Tables v1.10.1 ⇒ v1.12.0 [3bb67fe8] ↑ TranscodingStreams v0.9.13 ⇒ v0.11.3 [3a884ed6] + UnPack v1.0.2 [c8ffd9c3] - MbedTLS_jll v2.28.0+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [f50d1b31] ↑ Rmath_jll v0.4.0+0 ⇒ v0.5.1+0 [0dad84c5] - ArgTools v1.1.1 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] - Downloads v1.6.0 [7b1f6079] - FileWatching [9fa8497b] ~ Future ⇒ v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] - LibCURL v0.6.3 [76f85450] - LibGit2 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] - NetworkOptions v1.2.0 [44cfe95a] - Pkg v1.8.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] - REPL [9a3f8284] ~ Random ⇒ v1.11.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ~ SparseArrays ⇒ v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] ↑ TOML v1.0.0 ⇒ v1.0.3 [a4e569a6] - Tar v1.10.1 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v0.5.2+0 ⇒ v1.3.0+1 [deac9b47] - LibCURL_jll v7.84.0+0 [29816b5a] - LibSSH2_jll v1.10.2+0 [14a3606d] - MozillaCACerts_jll v2022.2.1 [4536629a] ↑ OpenBLAS_jll v0.3.20+0 ⇒ v0.3.29+0 [05823500] ↑ OpenLibm_jll v0.8.1+0 ⇒ v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.12+3 ⇒ v1.3.1+2 [8e850b90] ↑ libblastrampoline_jll v5.1.1+0 ⇒ v5.12.0+0 [8e850ede] - nghttp2_jll v1.48.0+0 [3f19e933] - p7zip_jll v17.4.0+0 Test Successfully re-resolved Status `/tmp/jl_ipIKAF/Project.toml` [b8d15608] BulkLMM v1.2.0 [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.7.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.119 [3f79f04f] Helium v0.2.1 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_ipIKAF/Manifest.toml` [47edcb42] ADTypes v1.14.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.18.0 [b8d15608] BulkLMM v1.2.0 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.5.8 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.52 [31c24e10] Distributions v0.25.119 [ffbed154] DocStringExtensions v0.9.4 [4e289a0a] EnumX v1.0.5 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [f6369f11] ForwardDiff v1.0.1 [3f79f04f] Helium v0.2.1 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [b964fa9f] LaTeXStrings v1.4.0 [d3d80556] LineSearches v7.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.9.1 [77ba4419] NaNMath v1.1.3 [429524aa] Optim v1.12.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.34 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.5.0 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [3a884ed6] UnPack v1.0.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 Testing Running tests... Utility functions test: Utility Functions Tests: Error During Test at /home/pkgeval/.julia/packages/BulkLMM/bdDFk/test/util_test.jl:301 Got exception outside of a @test MethodError: no method matching mapreduce_impl(::Statistics.var"#centralizedabs2fun##0#centralizedabs2fun##1"{Float64}, ::typeof(+), ::Matrix{Float64}, ::Int64, ::Int64) The function `mapreduce_impl` exists, but no method is defined for this combination of argument types. Closest candidates are: mapreduce_impl(::Any, ::Any, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer, !Matched::Int64) @ Base reduce.jl:263 mapreduce_impl(::Any, ::Any, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer) @ Base reduce.jl:286 mapreduce_impl(::Any, !Matched::Union{typeof(max), typeof(min)}, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer) @ Base reduce.jl:649 ... Stacktrace: [1] centralize_sumabs2(A::Matrix{Float64}, m::Float64, ifirst::Int64, ilast::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:257 [2] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:275 [3] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [4] varm! @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:304 [inlined] [5] _varm @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [inlined] [6] varm @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [7] _var @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [8] var @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [9] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [10] std @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [11] colStandardize!(A::Matrix{Float64}) @ BulkLMM ~/.julia/packages/BulkLMM/bdDFk/src/util.jl:83 [12] top-level scope @ ~/.julia/packages/BulkLMM/bdDFk/test/util_test.jl:180 [13] eval(m::Module, e::Any) @ Core ./boot.jl:489 [14] EvalInto @ ./boot.jl:494 [inlined] [15] #3 @ ./none:-1 [inlined] [16] iterate @ ./generator.jl:48 [inlined] [17] collect(itr::Base.Generator{UnitRange{Int64}, var"#3#4"{Expr}}) @ Base ./array.jl:790 [18] #testHelper#1 @ ~/.julia/packages/BulkLMM/bdDFk/test/testHelpers.jl:2 [inlined] [19] testHelper(test::Expr) @ Main ~/.julia/packages/BulkLMM/bdDFk/test/testHelpers.jl:1 [20] top-level scope @ ~/.julia/packages/BulkLMM/bdDFk/test/util_test.jl:187 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] top-level scope @ ~/.julia/packages/BulkLMM/bdDFk/test/util_test.jl:303 [23] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1835 [inlined] [24] macro expansion @ ~/.julia/packages/BulkLMM/bdDFk/test/util_test.jl:305 [inlined] [25] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [26] top-level scope @ ~/.julia/packages/BulkLMM/bdDFk/test/runtests.jl:15 [27] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1835 [inlined] [28] macro expansion @ ~/.julia/packages/BulkLMM/bdDFk/test/runtests.jl:15 [inlined] [29] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [30] top-level scope @ none:6 [31] eval(m::Module, e::Any) @ Core ./boot.jl:489 [32] exec_options(opts::Base.JLOptions) @ Base ./client.jl:297 [33] _start() @ Base ./client.jl:563 WLS functions test: WARNING: Method definition biasSquared(AbstractArray{Float64, 2}, AbstractArray{Float64, 2}) in module Main at /home/pkgeval/.julia/packages/BulkLMM/bdDFk/test/wls_basic_test.jl:21 overwritten at /home/pkgeval/.julia/packages/BulkLMM/bdDFk/test/wls_results_test.jl:100. WLS functions test: Kinship test: Test Passed Permutation LODs test: Test Passed Permutation thresholds test: Test Passed LMM functions test: Transform helper functions test: Scan functions test: Weighted residual variance functions test: Scan with covariates functions test: Test Passed Scan with covariates functions test (SVD): Test Passed Scan with covariates functions test (SVD2): Test Passed Scan with covariates functions test (p-vals output): Test Passed Bulkscan with covariates functions test (p-vals output): Test Passed Scan with covariates functions test (vector trait input): Test Passed Bulkscan functions test: Multiple Trait Scan Tests: Error During Test at /home/pkgeval/.julia/packages/BulkLMM/bdDFk/test/bulkscan_test.jl:185 Got exception outside of a @test MethodError: no method matching mapreduce_impl(::Statistics.var"#centralizedabs2fun##0#centralizedabs2fun##1"{Float64}, ::typeof(+), ::Matrix{Float64}, ::Int64, ::Int64) The function `mapreduce_impl` exists, but no method is defined for this combination of argument types. Closest candidates are: mapreduce_impl(::Any, ::Any, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer, !Matched::Int64) @ Base reduce.jl:263 mapreduce_impl(::Any, ::Any, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer) @ Base reduce.jl:286 mapreduce_impl(::Any, !Matched::Union{typeof(max), typeof(min)}, ::Union{Base.AbstractBroadcasted, AbstractArray}, ::Any, ::Integer, !Matched::Integer) @ Base reduce.jl:649 ... Stacktrace: [1] centralize_sumabs2(A::Matrix{Float64}, m::Float64, ifirst::Int64, ilast::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:257 [2] centralize_sumabs2!(R::Matrix{Float64}, A::Matrix{Float64}, means::Matrix{Float64}) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:275 [3] varm!(R::Matrix{Float64}, A::Matrix{Float64}, m::Matrix{Float64}; corrected::Bool) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:309 [4] varm! @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:304 [inlined] [5] _varm @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:341 [inlined] [6] varm @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:339 [inlined] [7] _var @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:386 [inlined] [8] var @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:380 [inlined] [9] _std(A::Matrix{Float64}, corrected::Bool, mean::Nothing, dims::Int64) @ Statistics ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:469 [10] std @ ~/.julia/packages/Statistics/gbcbG/src/Statistics.jl:461 [inlined] [11] colStandardize(A::Matrix{Float64}) @ BulkLMM ~/.julia/packages/BulkLMM/bdDFk/src/util.jl:91 [12] top-level scope @ ~/.julia/packages/BulkLMM/bdDFk/test/bulkscan_test.jl:61 [13] eval(m::Module, e::Any) @ Core ./boot.jl:489 [14] top-level scope @ ~/.julia/packages/BulkLMM/bdDFk/test/bulkscan_test.jl:187 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1835 [inlined] [16] macro expansion @ ~/.julia/packages/BulkLMM/bdDFk/test/bulkscan_test.jl:190 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [18] top-level scope @ ~/.julia/packages/BulkLMM/bdDFk/test/runtests.jl:15 [19] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1835 [inlined] [20] macro expansion @ ~/.julia/packages/BulkLMM/bdDFk/test/runtests.jl:30 [inlined] [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [22] top-level scope @ none:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:297 [25] _start() @ Base ./client.jl:563 Profile likelihood functions test: Test Summary: | Pass Error Total Time BulkLMM | 100 2 102 3m03.1s Utility Functions Tests | 40 1 41 23.2s Basic wls() Tests | 4 4 0.4s simple test WLS | 4 4 0.4s Test lmm.jl | 1 1 0.0s testTransformHelpers | 15 15 7.6s lmmlite_results_tests | 4 4 1.0s Tests for weighted errors feature | 16 16 0.4s Multiple Trait Scan Tests | 3 1 4 5.0s Test Analysis Helpers | 3 3 0.3s RNG of the outermost testset: Xoshiro(0xd2e5f1edfe1d5311, 0x46fb58b22f33339a, 0x5458d0e29a182b60, 0xed02768402bb32f6, 0xc8a54e0da14e2b79) ERROR: LoadError: Some tests did not pass: 100 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/BulkLMM/bdDFk/test/runtests.jl:14 Testing failed after 209.75s ERROR: LoadError: Package BulkLMM errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2414 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2269 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [12] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 644.49s: package tests unexpectedly errored