Package evaluation of BioFetch on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T03:54:29.998 ################################################################################ # Set-up # Set-up completed after 0.17s ################################################################################ # Installation # Installing BioFetch... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [f8217676] + BioFetch v0.2.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [67c07d97] + Automa v1.1.0 [f8217676] + BioFetch v0.2.1 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.4.1 [a0d4ced5] + BioServices v0.4.1 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.16.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [460bff9d] + ExceptionUnwrapping v0.1.11 [8f5d6c58] + EzXML v1.2.1 [c2308a5c] + FASTX v2.1.7 ⌅ [4f8a0a0a] + GenomicAnnotations v0.3.8 [708ec375] + Gumbo v0.8.3 [cd3eb016] + HTTP v1.10.16 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [e6f89c97] + LoggingExtras v1.1.0 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [4d8831e6] + OpenSSL v1.4.3 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [189a3867] + Reexport v1.2.2 [fdea26ae] + SIMD v3.7.1 [91c51154] + SentinelArrays v1.4.8 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.1 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 ⌅ [3bb67fe8] + TranscodingStreams v0.10.10 [7200193e] + Twiddle v1.1.2 [5c2747f8] + URIs v1.5.2 [228000da] + XMLDict v0.4.1 [528830af] + Gumbo_jll v0.10.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.6+2 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.08s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 1264.3 ms ✓ BioGenerics 18658.5 ms ✓ Automa HTTP Waiting for background task / IO / timer. [pid 21] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 21] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 21] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 21] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 21] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 21] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 21] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. 156720.1 ms ✓ HTTP 14612.4 ms ✓ GenomicAnnotations 20935.6 ms ✓ FASTX 13487.7 ms ✓ BioServices 2281.5 ms ✓ FASTX → BioSequencesExt BioFetch Waiting for background task / IO / timer. [pid 69] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 69] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 69] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 69] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 69] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 69] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. [pid 69] waiting for IO to finish: Handle type uv_handle_t->data This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. 192367.2 ms ✓ BioFetch 8 dependencies successfully precompiled in 421 seconds. 83 already precompiled. 2 dependencies had output during precompilation: ┌ HTTP │ ┌ Info: Ignoring an error that occurred during the precompilation workload │ │ exception = │ │ HTTP.ConnectError for url = `https://localhost:57813`: TimeoutException: try_with_timeout timed out after 30.0 seconds │ │ Stacktrace: │ │ [1] (::HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}})(req::HTTP.Messages.Request; proxy::Nothing, socket_type::Type, socket_type_tls::Nothing, readtimeout::Int64, connect_timeout::Int64, logerrors::Bool, logtag::Nothing, closeimmediately::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.ConnectionRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/ConnectionRequest.jl:88 │ │ [2] connections │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/ConnectionRequest.jl:60 [inlined] │ │ [3] (::Base.var"#47#48"{Base.var"#49#50"{ExponentialBackOff, HTTP.RetryRequest.var"#retrylayer##2#retrylayer##3"{Int64, typeof(HTTP.RetryRequest.FALSE), HTTP.Messages.Request, Base.RefValue{Int64}}, HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(args::HTTP.Messages.Request; kwargs::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ Base ./error.jl:311 │ │ [4] (::HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(req::HTTP.Messages.Request; retry::Bool, retries::Int64, retry_delays::ExponentialBackOff, retry_check::Function, retry_non_idempotent::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.RetryRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/RetryRequest.jl:75 │ │ [5] manageretries │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/RetryRequest.jl:30 [inlined] │ │ [6] (::HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}})(req::HTTP.Messages.Request; cookies::Bool, cookiejar::HTTP.Cookies.CookieJar, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.CookieRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/CookieRequest.jl:42 │ │ [7] managecookies │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/CookieRequest.jl:19 [inlined] │ │ [8] (::HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}})(req::HTTP.Messages.Request; iofunction::Nothing, decompress::Nothing, basicauth::Bool, detect_content_type::Bool, canonicalize_headers::Bool, kw::@Kwargs{verbose::Int64}) │ │ @ HTTP.HeadersRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/HeadersRequest.jl:71 │ │ [9] defaultheaders │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/HeadersRequest.jl:14 [inlined] │ │ [10] (::HTTP.RedirectRequest.var"#redirects#redirectlayer##0"{HTTP.RedirectRequest.var"#redirects#1#redirectlayer##1"{HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}})(req::HTTP.Messages.Request; redirect::Bool, redirect_limit::Int64, redirect_method::Nothing, forwardheaders::Bool, response_stream::Nothing, kw::@Kwargs{verbose::Int64}) │ │ @ HTTP.RedirectRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/RedirectRequest.jl:25 │ │ [11] redirects │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/RedirectRequest.jl:14 [inlined] │ │ [12] (::HTTP.MessageRequest.var"#makerequest#messagelayer##0"{HTTP.MessageRequest.var"#makerequest#1#messagelayer##1"{HTTP.RedirectRequest.var"#redirects#redirectlayer##0"{HTTP.RedirectRequest.var"#redirects#1#redirectlayer##1"{HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}})(method::String, url::URIs.URI, headers::Nothing, body::Vector{UInt8}; copyheaders::Bool, response_stream::Nothing, http_version::HTTP.Strings.HTTPVersion, verbose::Int64, kw::@Kwargs{}) │ │ @ HTTP.MessageRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/MessageRequest.jl:35 │ │ [13] makerequest │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/MessageRequest.jl:24 [inlined] │ │ [14] request(stack::HTTP.MessageRequest.var"#makerequest#messagelayer##0"{HTTP.MessageRequest.var"#makerequest#1#messagelayer##1"{HTTP.RedirectRequest.var"#redirects#redirectlayer##0"{HTTP.RedirectRequest.var"#redirects#1#redirectlayer##1"{HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}}, method::String, url::String, h::Nothing, b::Vector{UInt8}, q::Nothing; headers::Nothing, body::Vector{UInt8}, query::Nothing, kw::@Kwargs{}) │ │ @ HTTP ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:457 │ │ [15] request(stack::Function, method::String, url::String, h::Nothing, b::Vector{UInt8}, q::Nothing) │ │ @ HTTP ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:455 │ │ [16] #request#21 │ │ @ ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:315 [inlined] │ │ [17] request (repeats 2 times) │ │ @ ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:313 [inlined] │ │ [18] get │ │ @ ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:518 [inlined] │ │ [19] #51 │ │ @ ~/.julia/packages/HTTP/MIUdD/src/precompile.jl:36 [inlined] │ │ [20] withenv(::HTTP.var"#51#52"{String}, ::Pair{String, Union{Nothing, String}}, ::Vararg{Pair{String, Union{Nothing, String}}}) │ │ @ Base ./env.jl:265 │ │ [21] macro expansion │ │ @ ~/.julia/packages/HTTP/MIUdD/src/precompile.jl:35 [inlined] │ │ [22] macro expansion │ │ @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] │ │ [23] macro expansion │ │ @ ~/.julia/packages/HTTP/MIUdD/src/precompile.jl:34 [inlined] │ │ [24] macro expansion │ │ @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] │ │ [25] top-level scope │ │ @ ~/.julia/packages/HTTP/MIUdD/src/precompile.jl:4 │ │ [26] include(mapexpr::Function, mod::Module, _path::String) │ │ @ Base ./Base.jl:304 │ │ [27] top-level scope │ │ @ ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:643 │ │ [28] include(mod::Module, _path::String) │ │ @ Base ./Base.jl:303 │ │ [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ │ @ Base ./loading.jl:2978 │ │ [30] top-level scope │ │ @ stdin:5 │ │ [31] eval(m::Module, e::Any) │ │ @ Core ./boot.jl:489 │ │ [32] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ │ @ Base ./loading.jl:2824 │ │ [33] include_string │ │ @ ./loading.jl:2834 [inlined] │ │ [34] exec_options(opts::Base.JLOptions) │ │ @ Base ./client.jl:329 │ │ [35] _start() │ └ @ Base ./client.jl:563 │ │ [pid 21] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 21] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 21] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 21] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 21] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 21] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 21] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. └ ┌ BioFetch │ ┌ Info: Ignoring an error that occurred during the precompilation workload │ │ exception = │ │ HTTP.ConnectError for url = `https://localhost:57813`: TimeoutException: try_with_timeout timed out after 30.0 seconds │ │ Stacktrace: │ │ [1] (::HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}})(req::HTTP.Messages.Request; proxy::Nothing, socket_type::Type, socket_type_tls::Nothing, readtimeout::Int64, connect_timeout::Int64, logerrors::Bool, logtag::Nothing, closeimmediately::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.ConnectionRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/ConnectionRequest.jl:88 │ │ [2] connections │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/ConnectionRequest.jl:60 [inlined] │ │ [3] (::Base.var"#47#48"{Base.var"#49#50"{ExponentialBackOff, HTTP.RetryRequest.var"#retrylayer##2#retrylayer##3"{Int64, typeof(HTTP.RetryRequest.FALSE), HTTP.Messages.Request, Base.RefValue{Int64}}, HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(args::HTTP.Messages.Request; kwargs::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ Base ./error.jl:311 │ │ [4] (::HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(req::HTTP.Messages.Request; retry::Bool, retries::Int64, retry_delays::ExponentialBackOff, retry_check::Function, retry_non_idempotent::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.RetryRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/RetryRequest.jl:75 │ │ [5] manageretries │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/RetryRequest.jl:30 [inlined] │ │ [6] (::HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}})(req::HTTP.Messages.Request; cookies::Bool, cookiejar::HTTP.Cookies.CookieJar, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.CookieRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/CookieRequest.jl:42 │ │ [7] managecookies │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/CookieRequest.jl:19 [inlined] │ │ [8] (::HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}})(req::HTTP.Messages.Request; iofunction::Nothing, decompress::Nothing, basicauth::Bool, detect_content_type::Bool, canonicalize_headers::Bool, kw::@Kwargs{verbose::Int64}) │ │ @ HTTP.HeadersRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/HeadersRequest.jl:71 │ │ [9] defaultheaders │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/HeadersRequest.jl:14 [inlined] │ │ [10] (::HTTP.RedirectRequest.var"#redirects#redirectlayer##0"{HTTP.RedirectRequest.var"#redirects#1#redirectlayer##1"{HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}})(req::HTTP.Messages.Request; redirect::Bool, redirect_limit::Int64, redirect_method::Nothing, forwardheaders::Bool, response_stream::Nothing, kw::@Kwargs{verbose::Int64}) │ │ @ HTTP.RedirectRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/RedirectRequest.jl:25 │ │ [11] redirects │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/RedirectRequest.jl:14 [inlined] │ │ [12] (::HTTP.MessageRequest.var"#makerequest#messagelayer##0"{HTTP.MessageRequest.var"#makerequest#1#messagelayer##1"{HTTP.RedirectRequest.var"#redirects#redirectlayer##0"{HTTP.RedirectRequest.var"#redirects#1#redirectlayer##1"{HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}})(method::String, url::URIs.URI, headers::Nothing, body::Vector{UInt8}; copyheaders::Bool, response_stream::Nothing, http_version::HTTP.Strings.HTTPVersion, verbose::Int64, kw::@Kwargs{}) │ │ @ HTTP.MessageRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/MessageRequest.jl:35 │ │ [13] makerequest │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/MessageRequest.jl:24 [inlined] │ │ [14] request(stack::HTTP.MessageRequest.var"#makerequest#messagelayer##0"{HTTP.MessageRequest.var"#makerequest#1#messagelayer##1"{HTTP.RedirectRequest.var"#redirects#redirectlayer##0"{HTTP.RedirectRequest.var"#redirects#1#redirectlayer##1"{HTTP.HeadersRequest.var"#defaultheaders#headerslayer##0"{HTTP.HeadersRequest.var"#defaultheaders#1#headerslayer##1"{HTTP.CookieRequest.var"#managecookies#cookielayer##0"{HTTP.CookieRequest.var"#managecookies#1#cookielayer##1"{HTTP.RetryRequest.var"#manageretries#retrylayer##0"{HTTP.RetryRequest.var"#manageretries#1#retrylayer##1"{HTTP.ConnectionRequest.var"#connections#connectionlayer##0"{HTTP.ConnectionRequest.var"#connections#1#connectionlayer##1"{HTTP.TimeoutRequest.var"#timeouts#timeoutlayer##0"{HTTP.TimeoutRequest.var"#timeouts#1#timeoutlayer##1"{HTTP.ExceptionRequest.var"#exceptions#exceptionlayer##0"{HTTP.ExceptionRequest.var"#exceptions#1#exceptionlayer##1"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}}, method::String, url::String, h::Nothing, b::Vector{UInt8}, q::Nothing; headers::Nothing, body::Vector{UInt8}, query::Nothing, kw::@Kwargs{}) │ │ @ HTTP ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:457 │ │ [15] request(stack::Function, method::String, url::String, h::Nothing, b::Vector{UInt8}, q::Nothing) │ │ @ HTTP ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:455 │ │ [16] #request#21 │ │ @ ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:315 [inlined] │ │ [17] request (repeats 2 times) │ │ @ ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:313 [inlined] │ │ [18] get │ │ @ ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:518 [inlined] │ │ [19] #51 │ │ @ ~/.julia/packages/HTTP/MIUdD/src/precompile.jl:36 [inlined] │ │ [20] withenv(::HTTP.var"#51#52"{String}, ::Pair{String, Union{Nothing, String}}, ::Vararg{Pair{String, Union{Nothing, String}}}) │ │ @ Base ./env.jl:265 │ │ [21] macro expansion │ │ @ ~/.julia/packages/HTTP/MIUdD/src/precompile.jl:35 [inlined] │ │ [22] macro expansion │ │ @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] │ │ [23] macro expansion │ │ @ ~/.julia/packages/HTTP/MIUdD/src/precompile.jl:34 [inlined] │ │ [24] macro expansion │ │ @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] │ │ [25] top-level scope │ │ @ ~/.julia/packages/HTTP/MIUdD/src/precompile.jl:4 │ │ [26] include(mapexpr::Function, mod::Module, _path::String) │ │ @ Base ./Base.jl:304 │ │ [27] top-level scope │ │ @ ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:643 │ │ [28] include(mod::Module, _path::String) │ │ @ Base ./Base.jl:303 │ │ [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) │ │ @ Base ./loading.jl:2978 │ │ [30] top-level scope │ │ @ stdin:5 │ │ [31] eval(m::Module, e::Any) │ │ @ Core ./boot.jl:489 │ │ [32] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ │ @ Base ./loading.jl:2824 │ │ [33] include_string │ │ @ ./loading.jl:2834 [inlined] │ │ [34] exec_options(opts::Base.JLOptions) │ │ @ Base ./client.jl:329 │ │ [35] _start() │ └ @ Base ./client.jl:563 │ │ [pid 69] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 69] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 69] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 69] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 69] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 69] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. │ │ [pid 69] waiting for IO to finish: │ Handle type uv_handle_t->data │ This means that a package has started a background task or event source that has not finished running. For precompilation to complete successfully, the event source needs to be closed explicitly. See the developer documentation on fixing precompilation hangs for more help. └ Precompilation completed after 165.41s ################################################################################ # Loading # Loading BioFetch... Loading completed after 12.65s PkgEval succeeded after 459.34s