Package evaluation of Associations on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T06:02:03.169 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.64s ################################################################################ # Installation # Installing Associations... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [614afb3a] + Associations v4.4.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [614afb3a] + Associations v4.4.2 [13072b0f] + AxisAlgorithms v1.1.0 [49dc2e85] + Calculus v0.5.2 [d360d2e6] + ChainRulesCore v1.25.1 [35d6a980] + ColorSchemes v3.29.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.0 [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.4 [34da2185] + Compat v4.16.0 ⌅ [ab4b797d] + ComplexityMeasures v3.7.4 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 ⌅ [717857b8] + DSP v0.7.10 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [5732040d] + DelayEmbeddings v2.9.0 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 [7a1cc6ca] + FFTW v1.8.1 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [86223c79] + Graphs v1.12.1 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.5 [d25df0c9] + Inflate v0.1.5 [a98d9a8b] + Interpolations v0.15.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [fc60dff9] + LombScargle v1.0.3 [1914dd2f] + MacroTools v0.5.16 [299715c1] + MarchingCubes v0.1.11 [eff96d63] + Measurements v2.12.0 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.21 [645ca80c] + Neighborhood v0.2.4 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.34 [f27b6e38] + Polynomials v4.0.19 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [639c3291] + RecurrenceAnalysis v2.1.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.7 [6c6a2e73] + Scratch v1.2.1 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [40b095a5] + StateSpaceSets v2.4.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.5.0 [62fd8b95] + TensorCore v0.1.1 [c804724b] + TimeseriesSurrogates v2.7.2 [b8865327] + UnicodePlots v3.7.2 [29a6e085] + Wavelets v0.10.1 [efce3f68] + WoodburyMatrices v1.0.0 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.68s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 391.17s ################################################################################ # Testing # Testing Associations Status `/tmp/jl_7VkG2p/Project.toml` [614afb3a] Associations v4.4.2 [8e462317] CausalInference v0.19.1 [861a8166] Combinatorics v1.0.2 [5732040d] DelayEmbeddings v2.9.0 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.119 [6e36e845] DynamicalSystemsBase v3.14.0 [86223c79] Graphs v1.12.1 [09f84164] HypothesisTests v0.11.5 [645ca80c] Neighborhood v0.2.4 [860ef19b] StableRNGs v1.0.2 [40b095a5] StateSpaceSets v2.4.0 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [c804724b] TimeseriesSurrogates v2.7.2 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_7VkG2p/Manifest.toml` [47edcb42] ADTypes v1.14.0 [14f7f29c] AMD v0.5.3 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [614afb3a] Associations v4.4.2 [13072b0f] AxisAlgorithms v1.1.0 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [50ba71b6] BitBasis v0.9.8 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [49dc2e85] Calculus v0.5.2 [8e462317] CausalInference v0.19.1 [d360d2e6] ChainRulesCore v1.25.1 ⌅ [60701a23] CliqueTrees v0.4.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.0 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 ⌅ [ab4b797d] ComplexityMeasures v3.7.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 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UnicodePlots v3.7.2 [29a6e085] Wavelets v0.10.1 [efce3f68] WoodburyMatrices v1.0.0 [f5851436] FFTW_jll v3.3.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [d00139f3] METIS_jll v5.1.3+0 [856f044c] MKL_jll v2025.0.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... Info Given Associations was explicitly requested, output will be shown live  WARNING: Constructor for type "Dict" was extended in `RecurrenceAnalysis` without explicit qualification or import.  NOTE: Assumed "Dict" refers to `Base.Dict`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Dict end`.  Hint: To silence the warning, qualify `Dict` as `Base.Dict` in the method signature or explicitly `import Base: Dict`.  Update message: Associations v4.0.0  - The package has been renamed from CausalityTools.jl to Associations.jl! As part of the renaming, Associations.jl has incremented its major version to v4, which is fully backwards compatible with CausalityTools v3. 155360.2 ms ✓ Associations 1 dependency successfully precompiled in 158 seconds. 163 already precompiled. 1 dependency had output during precompilation: ┌ Associations │ [Output was shown above] └ Precompiling packages... 5391.3 ms ✓ SymbolicIndexingInterface 3945.7 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 3239.7 ms ✓ FastPower → FastPowerForwardDiffExt 1851.3 ms ✓ Roots → RootsForwardDiffExt 5538.0 ms ✓ RecursiveArrayTools 3859.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 3771.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 5888.5 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 27731.2 ms ✓ SciMLBase 10410.0 ms ✓ DiffEqBase 10132.8 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 7517.9 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 13336.9 ms ✓ OrdinaryDiffEqCore 6321.9 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 16888.7 ms ✓ OrdinaryDiffEqTsit5 Info Given DynamicalSystemsBase was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl 11859.2 ms ✓ DynamicalSystemsBase 16 dependencies successfully precompiled in 139 seconds. 128 already precompiled. 8 dependencies had output during precompilation: ┌ DynamicalSystemsBase │ [Output was shown above] └ ┌ DiffEqBase → DiffEqBaseForwardDiffExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqTsit5 │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ DiffEqBase → DiffEqBaseSparseArraysExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ DiffEqBase │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ ┌ OrdinaryDiffEqCore │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl └ WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl Precompiling packages... 2244.2 ms ✓ RecursiveArrayTools → RecursiveArrayToolsMeasurementsExt 1 dependency successfully precompiled in 2 seconds. 49 already precompiled. Precompiling packages... 3775.9 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 1 dependency successfully precompiled in 4 seconds. 66 already precompiled. Precompiling packages... Info Given DiffEqBaseDistributionsExt was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl 7378.6 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 1 dependency successfully precompiled in 9 seconds. 129 already precompiled. 1 dependency had output during precompilation: ┌ DiffEqBase → DiffEqBaseDistributionsExt │ [Output was shown above] └ Precompiling packages... Info Given DiffEqBaseChainRulesCoreExt was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl 5856.5 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 1 dependency successfully precompiled in 6 seconds. 99 already precompiled. 1 dependency had output during precompilation: ┌ DiffEqBase → DiffEqBaseChainRulesCoreExt │ [Output was shown above] └ Precompiling packages... Info Given DiffEqBaseMeasurementsExt was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/nn4y1/src/ThreadingUtilities.jl 5295.8 ms ✓ DiffEqBase → DiffEqBaseMeasurementsExt 1 dependency successfully precompiled in 6 seconds. 100 already precompiled. 1 dependency had output during precompilation: ┌ DiffEqBase → DiffEqBaseMeasurementsExt │ [Output was shown above] └ ┌ Warning: Convenience function `jdd` is deprecated. Use `association(JointDistanceDistribution(; kwargs...), x, y)` instead. └ @ Associations ~/.julia/packages/Associations/FZBsp/src/deprecations/v3/joint_distance_distribution.jl:13 ┌ Warning: jdd(::OneSampleTTest, x, y; kwargs...) is deprecated. Instead, do `measure = JointDistanceDistribution(); independence(JointDistanceDistributionTest(measure), x, y)`. └ @ Associations ~/.julia/packages/Associations/FZBsp/src/deprecations/v3/joint_distance_distribution.jl:29 ┌ Warning: Assignment to `n` in soft scope is ambiguous because a global variable by the same name exists: `n` will be treated as a new local. Disambiguate by using `local n` to suppress this warning or `global n` to assign to the existing global variable. └ @ ~/.julia/packages/Associations/FZBsp/test/methods/correlation/azadkia_chatterjee_coefficient.jl:21 ┌ Warning: Assignment to `y` in soft scope is ambiguous because a global variable by the same name exists: `y` will be treated as a new local. Disambiguate by using `local y` to suppress this warning or `global y` to assign to the existing global variable. └ @ ~/.julia/packages/Associations/FZBsp/test/methods/correlation/azadkia_chatterjee_coefficient.jl:23 ┌ Warning: Passing `m` as an argument to `OrdinalPattern...(m = ...)` is deprecated. Pass it as a type parameter instead: `OrdinalPattern...{m}`. └ @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/iqz1Z/src/deprecations.jl:97 ┌ Warning: Passing `m` as an argument to `OrdinalPattern...(m = ...)` is deprecated. Pass it as a type parameter instead: `OrdinalPattern...{m}`. └ @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/iqz1Z/src/deprecations.jl:97 ┌ Warning: Passing `m` as an argument to `OrdinalPattern...(m = ...)` is deprecated. Pass it as a type parameter instead: `OrdinalPattern...{m}`. └ @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/iqz1Z/src/deprecations.jl:97 ┌ Warning: Assignment to `c` in soft scope is ambiguous because a global variable by the same name exists: `c` will be treated as a new local. Disambiguate by using `local c` to suppress this warning or `global c` to assign to the existing global variable. └ @ ~/.julia/packages/Associations/FZBsp/test/methods/information/core/counts.jl:16 ┌ Warning: Passing `m` as an argument to `OrdinalPattern...(m = ...)` is deprecated. Pass it as a type parameter instead: `OrdinalPattern...{m}`. └ @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/iqz1Z/src/deprecations.jl:97 ┌ Warning: Passing `m` as an argument to `OrdinalPattern...(m = ...)` is deprecated. Pass it as a type parameter instead: `OrdinalPattern...{m}`. └ @ ComplexityMeasures ~/.julia/packages/ComplexityMeasures/iqz1Z/src/deprecations.jl:97 ┌ Warning: Did not encounter a minimum, returning last `τ`. └ @ DelayEmbeddings ~/.julia/packages/DelayEmbeddings/AV1Ee/src/separated_de/estimate_delay.jl:82 Inferring parents using optimal causation entropy (OCE) Notation: a ⫫ b | c := `a` is conditionally independent of `b`, given `c` a !⫫ b | c := `a` is conditionally dependent of `b`, given `c` * xᵢ(τ) := target variable at lag τ * pⱼ(τ) := candidate variable at lag τ * 𝒫ᵢ(τ) := parent set of xᵢ(τ) Inferring parents for x1(0) ˧ Querying pairwise associations... x₁(0) !⫫ x₁(-1) | ∅ ˧ Querying new variables conditioned on already selected variables... x₁(0) ⫫ x₁(-2) | {x₁(-1)} x₁(0) ⫫ x₂(-1) | {x₁(-1)} x₁(0) ⫫ x₂(-2) | {x₁(-1)} x₁(0) ⫫ x₃(-1) | {x₁(-1)} x₁(0) ⫫ x₃(-2) | {x₁(-1)} x₁(0) ⫫ x₄(-1) | {x₁(-1)} x₁(0) ⫫ x₄(-2) | {x₁(-1)} Inferring parents for x2(0) ˧ Querying pairwise associations... x₂(0) !⫫ x₁(-2) | ∅ ˧ Querying new variables conditioned on already selected variables... x₂(0) !⫫ x₂(-1) | {x₁(-2)} x₂(0) ⫫ x₁(-1) | {x₁(-2), x₂(-1)} x₂(0) ⫫ x₂(-2) | {x₁(-2), x₂(-1)} x₂(0) ⫫ x₃(-1) | {x₁(-2), x₂(-1)} x₂(0) ⫫ x₃(-2) | {x₁(-2), x₂(-1)} x₂(0) ⫫ x₄(-1) | {x₁(-2), x₂(-1)} x₂(0) ⫫ x₄(-2) | {x₁(-2), x₂(-1)} ˧ Backwards elimination... Before elimination, parents of x₂(0) are 𝒫₂(0) = {x₁(-2), x₂(-1)} Commencing with backward elimination... x₂(0) ⫫ x₁(-2) | {x₂(-1)} → Keeping x₁(-2) in parent set x₂(0) ⫫ x₂(-1) | {x₁(-2)} → Keeping x₂(-1) in parent set After elimination, parents of x₂(0) are 𝒫₂(0) = {x₁(-2), x₂(-1)} Inferring parents for x3(0) ˧ Querying pairwise associations... x₃(0) !⫫ x₃(-1) | ∅ ˧ Querying new variables conditioned on already selected variables... x₃(0) ⫫ x₁(-1) | {x₃(-1)} x₃(0) ⫫ x₁(-2) | {x₃(-1)} x₃(0) ⫫ x₂(-1) | {x₃(-1)} x₃(0) ⫫ x₂(-2) | {x₃(-1)} x₃(0) ⫫ x₃(-2) | {x₃(-1)} x₃(0) ⫫ x₄(-1) | {x₃(-1)} x₃(0) ⫫ x₄(-2) | {x₃(-1)} Inferring parents for x4(0) ˧ Querying pairwise associations... x₄(0) !⫫ x₄(-1) | ∅ ˧ Querying new variables conditioned on already selected variables... x₄(0) ⫫ x₁(-1) | {x₄(-1)} x₄(0) ⫫ x₁(-2) | {x₄(-1)} x₄(0) ⫫ x₂(-1) | {x₄(-1)} x₄(0) ⫫ x₂(-2) | {x₄(-1)} x₄(0) ⫫ x₃(-1) | {x₄(-1)} x₄(0) ⫫ x₃(-2) | {x₄(-1)} x₄(0) ⫫ x₄(-2) | {x₄(-1)} x₁(0) ← {x₁(-1)}x₂(0) ← {x₁(-1)}Precompiling packages... 2121.1 ms ✓ BangBang → BangBangStaticArraysExt 2487.3 ms ✓ Transducers → TransducersReferenceablesExt 10163.5 ms ✓ MetaGraphs 4089.1 ms ✓ Metis → MetisGraphs 4482.2 ms ✓ TreeWidthSolver 5647.1 ms ✓ ThreadsX 5225.3 ms ✓ CliqueTrees 33801.3 ms ✓ CausalInference 8 dependencies successfully precompiled in 70 seconds. 134 already precompiled. WARNING: Method definition _dummy_backedge() in module Memoization at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:49 overwritten at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:65. Precompiling packages... 10555.5 ms ✓ JLD2 → UnPackExt 1 dependency successfully precompiled in 11 seconds. 35 already precompiled. Precompiling packages... 1812.5 ms ✓ LogarithmicNumbers → LogarithmicNumbersForwardDiffExt 1 dependency successfully precompiled in 2 seconds. 20 already precompiled. Skeleton (conditional, level 𝓁=1): Removing Edge 1 => 4 and Edge 4 => 1 (p = 0.18636079041680942) Skeleton (conditional, level 𝓁=1): Removing Edge 1 => 5 and Edge 5 => 1 (p = 0.948753842549287) Skeleton (conditional, level 𝓁=1): Removing Edge 2 => 3 and Edge 3 => 2 (p = 0.7237613298100423) Skeleton (conditional, level 𝓁=1): Removing Edge 2 => 5 and Edge 5 => 2 (p = 0.7226954522836713) Skeleton (conditional, level 𝓁=1): Removing Edge 3 => 2 and Edge 2 => 3 (p = 0.7237613298100449) Skeleton (conditional, level 𝓁=1): Removing Edge 3 => 5 and Edge 5 => 3 (p = 0.06959590969265217) Skeleton (conditional, level 𝓁=1): Removing Edge 4 => 1 and Edge 1 => 4 (p = 0.18636079041720977) Skeleton (conditional, level 𝓁=1): Removing Edge 5 => 1 and Edge 1 => 5 (p = 0.948753842549287) Skeleton (conditional, level 𝓁=1): Removing Edge 5 => 2 and Edge 2 => 5 (p = 0.7226954522836713) Skeleton (conditional, level 𝓁=1): Removing Edge 5 => 3 and Edge 3 => 5 (p = 0.06959590969265328) Orienting v-structures... (Rule 0) Oriented 2 ↔ 4 ↔ 3 as 2 → 4 ← 3 Applying rules sequentially ... (#1) (Rule 1) Oriented 2 → 4 ↔ 5 as 2 → 4 → 5 Applying rules sequentially ... (#2) No edge was redirected in this iteration. Stopping. Finished orientiation! Test Summary: | Pass Total Time Associations.jl | 760 760 16m51.3s Testing Associations tests passed Testing completed after 1183.51s PkgEval succeeded after 1632.56s