Package evaluation of AnovaGLM on Julia 1.13.0-DEV.449 (8d6b63c3a6*) started at 2025-04-29T02:20:15.302 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 6.95s ################################################################################ # Installation # Installing AnovaGLM... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [0a47a8e3] + AnovaGLM v0.2.4 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [946dddda] + AnovaBase v0.8.0 [0a47a8e3] + AnovaGLM v0.2.4 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 [1a297f60] + FillArrays v1.13.0 [38e38edf] + GLM v1.9.0 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.34 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Installation completed after 3.98s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 43.15s ################################################################################ # Testing # Testing AnovaGLM Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_WiBE6M/Project.toml` [0a47a8e3] + AnovaGLM v0.2.4 [336ed68f] ↑ CSV v0.10.4 ⇒ v0.10.15 [324d7699] ↑ CategoricalArrays v0.10.6 ⇒ v0.10.8 [a93c6f00] ↑ DataFrames v1.3.4 ⇒ v1.7.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_WiBE6M/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [946dddda] + AnovaBase v0.8.0 [0a47a8e3] + AnovaGLM v0.2.4 [336ed68f] ↑ CSV v0.10.4 ⇒ v0.10.15 [324d7699] ↑ CategoricalArrays v0.10.6 ⇒ v0.10.8 [944b1d66] ↑ CodecZlib v0.7.0 ⇒ v0.7.8 [34da2185] ↑ Compat v3.45.0 ⇒ v4.16.0 [9a962f9c] ↑ DataAPI v1.10.0 ⇒ v1.16.0 [a93c6f00] ↑ DataFrames v1.3.4 ⇒ v1.7.0 [864edb3b] ↑ DataStructures v0.18.13 ⇒ v0.18.22 [8bb1440f] - DelimitedFiles [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 [e2ba6199] ↑ ExprTools v0.1.8 ⇒ v0.1.10 [5789e2e9] ↑ FileIO v1.14.0 ⇒ v1.17.0 [48062228] ↑ FilePathsBase v0.9.18 ⇒ v0.9.24 [1a297f60] + FillArrays v1.13.0 [59287772] - Formatting v0.4.2 [38e38edf] + GLM v1.9.0 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] ↑ InlineStrings v1.1.4 ⇒ v1.4.3 [41ab1584] ↑ InvertedIndices v1.1.0 ⇒ v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] ↑ Missings v1.0.2 ⇒ v1.2.0 [78c3b35d] ↑ Mocking v0.7.3 ⇒ v0.8.1 [bac558e1] ↑ OrderedCollections v1.4.1 ⇒ v1.8.0 [90014a1f] + PDMats v0.11.34 [69de0a69] ↑ Parsers v2.3.2 ⇒ v2.8.3 [2dfb63ee] ↑ PooledArrays v1.4.2 ⇒ v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] ↑ PrettyTables v1.3.1 ⇒ v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] - RecipesBase v1.2.1 [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1 [79098fc4] + Rmath v0.8.0 [6c6a2e73] ↑ Scratch v1.1.1 ⇒ v1.2.1 [91c51154] ↑ SentinelArrays v1.3.13 ⇒ v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] ↑ SortingAlgorithms v1.0.1 ⇒ v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [dc5dba14] + TZJData v1.5.0+2025b [bd369af6] ↑ Tables v1.7.0 ⇒ v1.12.0 [f269a46b] ↑ TimeZones v1.9.0 ⇒ v1.21.3 [3bb67fe8] ↑ TranscodingStreams v0.9.6 ⇒ v0.11.3 [76eceee3] + WorkerUtilities v1.6.1 [c8ffd9c3] - MbedTLS_jll [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] ~ ArgTools ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] - Distributed [f43a241f] ~ Downloads ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [9fa8497b] ~ Future ⇒ v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] - LazyArtifacts [b27032c2] ~ LibCURL ⇒ v0.6.4 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ~ NetworkOptions ⇒ v1.3.0 [44cfe95a] ~ Pkg ⇒ v1.12.0 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] ~ REPL ⇒ v1.11.0 [9a3f8284] ~ Random ⇒ v1.11.0 [ea8e919c] ~ SHA ⇒ v0.7.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [1a1011a3] - SharedArrays [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ~ SparseArrays ⇒ v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] ~ TOML ⇒ v1.0.3 [a4e569a6] ~ Tar ⇒ v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ~ CompilerSupportLibraries_jll ⇒ v1.3.0+1 [deac9b47] ~ LibCURL_jll ⇒ v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] ~ LibSSH2_jll ⇒ v1.11.3+1 [14a3606d] ~ MozillaCACerts_jll ⇒ v2024.12.31 [4536629a] ~ OpenBLAS_jll ⇒ v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] ~ Zlib_jll ⇒ v1.3.1+2 [8e850b90] ~ libblastrampoline_jll ⇒ v5.12.0+0 [8e850ede] ~ nghttp2_jll ⇒ v1.65.0+0 [3f19e933] ~ p7zip_jll ⇒ v17.5.0+2 Test Successfully re-resolved Status `/tmp/jl_WiBE6M/Project.toml` [0a47a8e3] AnovaGLM v0.2.4 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [a93c6f00] DataFrames v1.7.0 [ce6b1742] RDatasets v0.7.7 [8dfed614] Test v1.11.0 Status `/tmp/jl_WiBE6M/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [946dddda] AnovaBase v0.8.0 [0a47a8e3] AnovaGLM v0.2.4 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.16.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [31c24e10] Distributions v0.25.119 [ffbed154] DocStringExtensions v0.9.4 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [38e38edf] GLM v1.9.0 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [78c3b35d] Mocking v0.8.1 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.34 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 ⌅ [df47a6cb] RData v0.8.3 [ce6b1742] RDatasets v0.7.7 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.4 [892a3eda] StringManipulation v0.4.1 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [f269a46b] TimeZones v1.21.3 [3bb67fe8] TranscodingStreams v0.11.3 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 90491.8 ms ✓ DataFrames 7710.9 ms ✓ TimeZones 24455.8 ms ✓ RData 21582.8 ms ✓ RDatasets 4 dependencies successfully precompiled in 145 seconds. 68 already precompiled. ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ AnovaGLM ~/.julia/packages/AnovaGLM/OjGPB/src/anova.jl:162 ┌ Warning: Starting from GLM.jl 1.8, null model is defined as having no predictor at all when a model without an intercept is passed. └ @ GLM ~/.julia/packages/GLM/vM20T/src/lm.jl:185 ┌ Warning: Starting from GLM.jl 1.8, null model is defined as having no predictor at all when a model without an intercept is passed. └ @ GLM ~/.julia/packages/GLM/vM20T/src/lm.jl:185 ┌ Warning: Empty model is not allowed due to `CholeskyPivoted` └ @ AnovaGLM ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:236 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ AnovaGLM ~/.julia/packages/AnovaGLM/OjGPB/src/anova.jl:162 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 ┌ Warning: Empty model is not allowed due to `CholeskyPivoted` └ @ AnovaGLM ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:251 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 ┌ Warning: Empty model is not allowed due to `CholeskyPivoted` └ @ AnovaGLM ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:251 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ AnovaGLM ~/.julia/packages/AnovaGLM/OjGPB/src/anova.jl:174 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:61 [inlined] └ @ Core ~/.julia/packages/AnovaGLM/OjGPB/src/fit.jl:61 Test Summary: | Pass Total Time AnovaGLM.jl | 59 59 3m42.1s Testing AnovaGLM tests passed Testing completed after 497.58s PkgEval succeeded after 563.82s