Package evaluation to test Stheno on Julia 1.14.0-DEV.87 (8bcaa34afa*) started at 2025-11-15T11:13:16.051 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.3s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.12.0 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.15.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.66 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.06s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 10327.0 ms ✓ KernelFunctions 4666.1 ms ✓ BlockArrays 3427.0 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 10208.1 ms ✓ Distributions 3445.3 ms ✓ Distributions → DistributionsChainRulesCoreExt 3879.8 ms ✓ Distributions → DistributionsTestExt 5632.0 ms ✓ AbstractGPs 7272.9 ms ✓ Stheno 8 dependencies successfully precompiled in 51 seconds. 73 already precompiled. Precompilation completed after 61.8s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_3X4a52/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_3X4a52/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.12.0 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.15.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.3.0 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.6 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.39 [ec8451be] KernelFunctions v0.10.66 [929cbde3] LLVM v9.4.4 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.9.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.38+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/Ms56q/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#141` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 19m04.1s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1153s / 99.2% 28.2GiB / 99.5% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 745s 65.2% 745s 19.7GiB 70.1% 19.7GiB addition 1 407s 35.6% 407s 11.4GiB 40.5% 11.4GiB Standardised Tests (correlated sum) 1 230s 20.2% 230s 6.17GiB 22.0% 6.17GiB adj_ad 9 26.6s 2.3% 2.96s 0.97GiB 3.5% 110MiB adj_fd 9 9.78s 0.9% 1.09s 247MiB 0.9% 27.5MiB Standardised Tests (independent sum) 1 131s 11.5% 131s 4.89GiB 17.4% 4.89GiB adj_ad 9 25.7s 2.2% 2.85s 1.18GiB 4.2% 135MiB adj_fd 9 10.3s 0.9% 1.14s 247MiB 0.9% 27.5MiB Correlated GPs 1 42.9s 3.8% 42.9s 290MiB 1.0% 290MiB Consistency Tests 1 17.7s 1.5% 17.7s 117MiB 0.4% 117MiB Verify mean / kernel numerically 1 2.62s 0.2% 2.62s 38.3MiB 0.1% 38.3MiB Consistency Tests 1 1.32s 0.1% 1.32s 11.6MiB 0.0% 11.6MiB product 1 165s 14.4% 165s 3.90GiB 13.9% 3.90GiB multiply by function 1 95.6s 8.4% 95.6s 2.08GiB 7.4% 2.08GiB Diff Tests 1 55.1s 4.8% 55.1s 1.59GiB 5.7% 1.59GiB adj_ad 9 21.2s 1.9% 2.35s 836MiB 2.9% 92.8MiB adj_fd 9 7.33s 0.6% 815ms 151MiB 0.5% 16.8MiB Consistency Tests 1 6.28s 0.5% 6.28s 95.4MiB 0.3% 95.4MiB multiply by constant 1 69.2s 6.0% 69.2s 1.83GiB 6.5% 1.83GiB Diff Tests 1 52.7s 4.6% 52.7s 1.78GiB 6.3% 1.78GiB adj_ad 9 16.6s 1.5% 1.85s 772MiB 2.7% 85.8MiB adj_fd 9 11.4s 1.0% 1.27s 239MiB 0.8% 26.5MiB Consistency Tests 1 3.99s 0.3% 3.99s 16.5MiB 0.1% 16.5MiB GP mul errors 1 13.5ms 0.0% 13.5ms 37.8KiB 0.0% 37.8KiB compose 1 89.1s 7.8% 89.1s 2.33GiB 8.3% 2.33GiB general 1 55.2s 4.8% 55.2s 1.57GiB 5.6% 1.57GiB Diff Tests 1 49.4s 4.3% 49.4s 1.52GiB 5.4% 1.52GiB adj_ad 9 15.8s 1.4% 1.75s 706MiB 2.5% 78.5MiB adj_fd 9 7.11s 0.6% 790ms 165MiB 0.6% 18.4MiB Consistency Tests 1 4.32s 0.4% 4.32s 32.0MiB 0.1% 32.0MiB Stretch 1 27.8s 2.4% 27.8s 683MiB 2.4% 683MiB scalar stretch 1 27.0s 2.4% 27.0s 671MiB 2.3% 671MiB scalar input 1 26.2s 2.3% 26.2s 667MiB 2.3% 667MiB adj_fd 9 9.72s 0.8% 1.08s 213MiB 0.7% 23.6MiB adj_ad 9 3.46s 0.3% 384ms 138MiB 0.5% 15.3MiB vector input 1 815ms 0.1% 815ms 3.13MiB 0.0% 3.13MiB Vector stretch 1 650ms 0.1% 650ms 9.39MiB 0.0% 9.39MiB Matrix stretch 1 144ms 0.0% 144ms 2.84MiB 0.0% 2.84MiB Shift 1 3.24s 0.3% 3.24s 37.4MiB 0.1% 37.4MiB Shift{Vector{Float64}} 1 1.78s 0.2% 1.78s 13.6MiB 0.0% 13.6MiB Shift{Float64} 1 1.45s 0.1% 1.45s 23.8MiB 0.1% 23.8MiB Select 1 1.61s 0.1% 1.61s 29.9MiB 0.1% 29.9MiB evaluation 1 732ms 0.1% 732ms 19.5MiB 0.1% 19.5MiB idx isa Vector 1 530ms 0.0% 530ms 7.37MiB 0.0% 7.37MiB idx isa Integer 1 352ms 0.0% 352ms 3.03MiB 0.0% 3.03MiB Periodic 1 1.19s 0.1% 1.19s 30.8MiB 0.1% 30.8MiB cross 1 23.5s 2.1% 23.5s 1.31GiB 4.7% 1.31GiB block arrays 1 11.7s 1.0% 11.7s 783MiB 2.7% 783MiB Stheno._collect ∘ _mortar 1 9.82s 0.9% 9.82s 658MiB 2.3% 658MiB BlockMatrix 1 5.17s 0.5% 5.17s 375MiB 1.3% 375MiB adj_fd 1 695ms 0.1% 695ms 131MiB 0.5% 131MiB adj_ad 1 45.8ms 0.0% 45.8ms 2.15MiB 0.0% 2.15MiB BlockVector 1 4.66s 0.4% 4.66s 283MiB 1.0% 283MiB adj_fd 1 549ms 0.0% 549ms 12.2MiB 0.0% 12.2MiB adj_ad 1 164ms 0.0% 164ms 15.1MiB 0.1% 15.1MiB fdm stuff 1 1.88s 0.2% 1.88s 125MiB 0.4% 125MiB Correctness tests 1 6.45s 0.6% 6.45s 395MiB 1.4% 395MiB Standardised Tests 1 5.32s 0.5% 5.32s 161MiB 0.6% 161MiB gp 1 178s 15.5% 178s 4.44GiB 15.8% 4.44GiB adj_ad 2 16.9s 1.5% 8.47s 791MiB 2.8% 396MiB sparse gp 1 14.1s 1.2% 14.1s 374MiB 1.3% 374MiB SparseFiniteGP inference 1 10.1s 0.9% 10.1s 242MiB 0.8% 242MiB SparseFiniteGP methods 1 3.71s 0.3% 3.71s 127MiB 0.4% 127MiB SparseFiniteGP Constructors 1 291ms 0.0% 291ms 3.81MiB 0.0% 3.81MiB gp 1 13.5s 1.2% 13.5s 394MiB 1.4% 394MiB GP 1 13.2s 1.2% 13.2s 391MiB 1.4% 391MiB independent GPs 1 246ms 0.0% 246ms 2.49MiB 0.0% 2.49MiB wrapped AbstractGP 1 10.0ms 0.0% 10.0ms 271KiB 0.0% 271KiB adj_fd 2 4.99s 0.4% 2.50s 119MiB 0.4% 59.3MiB derived_gp 1 156μs 0.0% 156μs 1.94KiB 0.0% 1.94KiB gaussian_process_probabilistic_programme 1 144s 12.6% 144s 2.15GiB 7.6% 2.15GiB Zygote 1 27.8s 2.4% 27.8s 0.94GiB 3.3% 0.94GiB nested gppp 1 15.5s 1.4% 15.5s 70.6MiB 0.2% 70.6MiB External Consistency 1 14.6s 1.3% 14.6s 93.2MiB 0.3% 93.2MiB split 1 651ms 0.1% 651ms 11.0MiB 0.0% 11.0MiB gppp macro 1 57.4ms 0.0% 57.4ms 537KiB 0.0% 537KiB doctests 1 70.4s 6.2% 70.4s 1.61GiB 5.7% 1.61GiB BlockData 1 6.50s 0.6% 6.50s 213MiB 0.7% 213MiB vcat(::GPPPInput...) 1 1.48s 0.1% 1.48s 74.8MiB 0.3% 74.8MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1301.14s PkgEval succeeded after 1398.42s