Package evaluation to test MultilayerGraphs on Julia 1.14.0-DEV.87 (8bcaa34afa*) started at 2025-11-15T15:44:17.044 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.18s ################################################################################ # Installation # Installing MultilayerGraphs... Resolving package versions... Installed Rmath_jll ─────────────────── v0.5.1+0 Installed StridedViews ──────────────── v0.4.1 Installed MacroTools ────────────────── v0.5.16 Installed Collects ──────────────────── v1.0.0 Installed DataStructures ────────────── v0.18.22 Installed FillArrays ────────────────── v1.15.0 Installed JLD2 ──────────────────────── v0.4.55 Installed AbstractTrees ─────────────── v0.4.5 Installed ExprParsers ───────────────── v1.2.3 Installed ProxyInterfaces ───────────── v1.1.1 Installed OMEinsum ──────────────────── v0.9.2 Installed Bijections ────────────────── v0.2.2 Installed HypergeometricFunctions ───── v0.3.28 Installed ArnoldiMethod ─────────────── v0.4.0 Installed AliasTables ───────────────── v1.1.3 Installed BitBasis ──────────────────── v0.9.10 Installed StatsBase ─────────────────── v0.34.8 Installed ConstructionBase ──────────── v1.6.0 Installed Pipe ──────────────────────── v1.3.0 Installed TranscodingStreams ────────── v0.11.3 Installed OrderedCollections ────────── v1.8.1 Installed Combinatorics ─────────────── v1.0.3 Installed Statistics ────────────────── v1.11.1 Installed StatsAPI ──────────────────── v1.7.1 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Suppressor ────────────────── v0.2.8 Installed Compat ────────────────────── v4.18.1 Installed SimpleWeightedGraphs ──────── v1.5.0 Installed DataAPI ───────────────────── v1.16.0 Installed BatchedRoutines ───────────── v0.2.2 Installed PrecompileTools ───────────── v1.3.3 Installed DataValueInterfaces ───────── v1.0.0 Installed StaticArraysCore ──────────── v1.4.4 Installed TupleTools ────────────────── v1.6.0 Installed StaticArrays ──────────────── v1.9.15 Installed IrrationalConstants ───────── v0.2.6 Installed FileIO ────────────────────── v1.17.1 Installed SimpleMatch ───────────────── v1.1.0 Installed StringManipulation ────────── v0.4.1 Installed QuadGK ────────────────────── v2.11.2 Installed SimpleTraits ──────────────── v0.9.5 Installed Requires ──────────────────── v1.3.1 Installed ChainRulesCore ────────────── v1.26.0 Installed MultilayerGraphs ──────────── v1.1.5 Installed Parsers ───────────────────── v2.8.3 Installed PackageExtensionCompat ────── v1.0.2 Installed CliqueTrees ───────────────── v1.12.2 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed LogExpFunctions ───────────── v0.3.29 Installed JSON ──────────────────────── v0.21.4 Installed Rmath ─────────────────────── v0.9.0 Installed StatsFuns ─────────────────── v1.5.2 Installed FixedSizeArrays ───────────── v1.2.0 Installed Distributions ─────────────── v0.25.122 Installed PrettyTables ──────────────── v3.1.0 Installed Tables ────────────────────── v1.12.1 Installed DataTypesBasic ────────────── v2.0.3 Installed PtrArrays ─────────────────── v1.3.0 Installed Reexport ──────────────────── v1.2.2 Installed Setfield ──────────────────── v1.1.2 Installed Missings ──────────────────── v1.2.0 Installed TreeWidthSolver ───────────── v0.3.5 Installed Preferences ───────────────── v1.5.0 Installed TensorOperations ──────────── v5.3.1 Installed SpecialFunctions ──────────── v2.6.1 Installed MetaGraphs ────────────────── v0.7.2 Installed StructEquality ────────────── v2.1.0 Installed JLLWrappers ───────────────── v1.7.1 Installed VectorInterface ───────────── v0.5.0 Installed TableTraits ───────────────── v1.0.1 Installed OMEinsumContractionOrders ─── v1.2.2 Installed SortingAlgorithms ─────────── v1.2.2 Installed PDMats ────────────────────── v0.11.36 Installed Crayons ───────────────────── v4.1.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed LRUCache ──────────────────── v1.6.2 Installed IterTools ─────────────────── v1.10.0 Installed DocStringExtensions ───────── v0.9.5 Installed WhereTraits ───────────────── v1.1.2 Installed Inflate ───────────────────── v0.1.5 Installed Strided ───────────────────── v2.3.2 Installed Graphs ────────────────────── v1.13.1 Installed SimpleValueGraphs ─────────── v0.4.1 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [af984530] + MultilayerGraphs v1.1.5 Updating `~/.julia/environments/v1.14/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [a9ab73d0] + BatchedRoutines v0.2.2 [e2ed5e7c] + Bijections v0.2.2 [50ba71b6] + BitBasis v0.9.10 [d360d2e6] + ChainRulesCore v1.26.0 [60701a23] + CliqueTrees v1.12.2 [08986516] + Collects v1.0.0 [861a8166] + Combinatorics v1.0.3 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [83eed652] + DataTypesBasic v2.0.3 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [c5caad1f] + ExprParsers v1.2.3 [5789e2e9] + FileIO v1.17.1 [1a297f60] + FillArrays v1.15.0 [3821ddf9] + FixedSizeArrays v1.2.0 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.55 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 ⌅ [626554b9] + MetaGraphs v0.7.2 [e1d29d7a] + Missings v1.2.0 [af984530] + MultilayerGraphs v1.1.5 [ebe7aa44] + OMEinsum v0.9.2 ⌃ [6f22d1fd] + OMEinsumContractionOrders v1.2.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [65ce6f38] + PackageExtensionCompat v1.0.2 [69de0a69] + Parsers v2.8.3 [b98c9c47] + Pipe v1.3.0 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [9b3bf0c4] + ProxyInterfaces v1.1.1 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [efcf1570] + Setfield v1.1.2 [a3ae8450] + SimpleMatch v1.1.0 [699a6c99] + SimpleTraits v0.9.5 [b43c691f] + SimpleValueGraphs v0.4.1 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [5e0ebb24] + Strided v2.3.2 [4db3bf67] + StridedViews v0.4.1 [892a3eda] + StringManipulation v0.4.1 [6ec83bb0] + StructEquality v2.1.0 [fd094767] + Suppressor v0.2.8 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [6aa20fa7] + TensorOperations v5.3.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7d267fc5] + TreeWidthSolver v0.3.5 [9d95972d] + TupleTools v1.6.0 [409d34a3] + VectorInterface v0.5.0 [c9d4e05b] + WhereTraits v1.1.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 9.24s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 3918.4 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 3900.0 ms ✓ MacroTools 964.0 ms ✓ BatchedRoutines 808.2 ms ✓ Collects 679.1 ms ✓ Reexport 693.7 ms ✓ SimpleMatch 949.9 ms ✓ Statistics 762.8 ms ✓ DataAPI 1018.6 ms ✓ ConstructionBase 1848.5 ms ✓ IrrationalConstants 702.3 ms ✓ DataValueInterfaces 789.7 ms ✓ StaticArraysCore WARNING: method definition for promote_typejoin at /home/pkgeval/.julia/packages/DataTypesBasic/1o2ng/src/promote_type.jl:214 declares type variable L but does not use it. 2133.2 ms ✓ DataTypesBasic 705.4 ms ✓ StatsAPI 993.1 ms ✓ Requires 1090.1 ms ✓ OrderedCollections 938.6 ms ✓ DocStringExtensions 994.9 ms ✓ IterTools 1053.0 ms ✓ AbstractTrees 1859.8 ms ✓ Combinatorics 752.1 ms ✓ Suppressor 987.2 ms ✓ Inflate 742.1 ms ✓ ProxyInterfaces 925.8 ms ✓ Bijections 1781.6 ms ✓ FillArrays 914.6 ms ✓ LRUCache 714.8 ms ✓ PtrArrays 664.5 ms ✓ Pipe 1138.3 ms ✓ TranscodingStreams 885.2 ms ✓ TupleTools 1007.2 ms ✓ VectorInterface 675.2 ms ✓ IteratorInterfaceExtensions 758.9 ms ✓ LaTeXStrings 740.9 ms ✓ PackageExtensionCompat 1091.9 ms ✓ SuiteSparse 1559.7 ms ✓ Crayons 963.0 ms ✓ Compat 1040.2 ms ✓ Preferences 2906.9 ms ✓ SimpleTraits 939.6 ms ✓ FixedSizeArrays 1129.2 ms ✓ Statistics → SparseArraysExt 880.0 ms ✓ Missings 738.6 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 7941.7 ms ✓ FileIO 1145.2 ms ✓ LogExpFunctions 1280.3 ms ✓ FillArrays → FillArraysSparseArraysExt 836.9 ms ✓ FillArrays → FillArraysStatisticsExt 709.4 ms ✓ LRUCache → SerializationExt 857.0 ms ✓ AliasTables 674.3 ms ✓ TableTraits 837.2 ms ✓ StridedViews 1591.2 ms ✓ PDMats 718.2 ms ✓ Compat → CompatLinearAlgebraExt 1008.7 ms ✓ JLLWrappers 774.4 ms ✓ PrecompileTools 1584.0 ms ✓ FixedSizeArrays → RandomExt 2437.0 ms ✓ Setfield 1566.0 ms ✓ Tables 846.1 ms ✓ StridedViews → StridedViewsPtrArraysExt 1014.8 ms ✓ Strided 1209.0 ms ✓ FillArrays → FillArraysPDMatsExt 2522.3 ms ✓ ChainRulesCore 786.6 ms ✓ StructEquality 3331.0 ms ✓ DataStructures 1210.9 ms ✓ Rmath_jll 1234.8 ms ✓ OpenSpecFun_jll 11265.5 ms ✓ StaticArrays 2587.1 ms ✓ StringManipulation 14323.5 ms ✓ Parsers 36031.7 ms ✓ JLD2 ┌ Info: TensorOperations can optionally be instructed to precompile several functions, which can be used to reduce the time to first execution (TTFX). │ This is disabled by default as this can take a while on some machines, and is only relevant for contraction-heavy workloads. │ │ To enable or disable precompilation, you can use the following script: │ │ ```julia │ using TensorOperations, Preferences │ set_preferences!(TensorOperations, "precompile_workload" => true; force=true) │ ``` │ └ This will create a `LocalPreferences.toml` file next to your current `Project.toml` file to store this setting in a persistent way. 2836.3 ms ✓ TensorOperations 1124.3 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 2706.0 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 4265.8 ms ✓ ExprParsers 1239.6 ms ✓ SortingAlgorithms 2405.1 ms ✓ QuadGK 1266.9 ms ✓ Rmath 4580.7 ms ✓ SpecialFunctions 1658.3 ms ✓ StaticArrays → StaticArraysStatisticsExt 1332.1 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1993.2 ms ✓ BitBasis 3265.0 ms ✓ ArnoldiMethod 1189.7 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 31589.8 ms ✓ PrettyTables 3701.8 ms ✓ JSON 2428.6 ms ✓ TensorOperations → TensorOperationsChainRulesCoreExt 3824.0 ms ✓ StatsBase 3089.4 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1903.4 ms ✓ HypergeometricFunctions 8829.5 ms ✓ Graphs 2399.0 ms ✓ PDMats → StatsBaseExt 2411.8 ms ✓ StatsFuns 2971.2 ms ✓ SimpleWeightedGraphs 7124.8 ms ✓ MetaGraphs 5254.6 ms ✓ CliqueTrees 3170.2 ms ✓ TreeWidthSolver 2896.1 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 7947.4 ms ✓ Distributions WARNING: Constructor for type "SimpleGraph" was extended in `SimpleValueGraphs` without explicit qualification or import.  NOTE: Assumed "SimpleGraph" refers to `SimpleGraphs.SimpleGraph`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function SimpleGraph end`.  Hint: To silence the warning, qualify `SimpleGraph` as `SimpleGraphs.SimpleGraph` in the method signature or explicitly `import SimpleGraphs: SimpleGraph`. WARNING: Constructor for type "SimpleDiGraph" was extended in `SimpleValueGraphs` without explicit qualification or import.  NOTE: Assumed "SimpleDiGraph" refers to `SimpleGraphs.SimpleDiGraph`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function SimpleDiGraph end`.  Hint: To silence the warning, qualify `SimpleDiGraph` as `SimpleGraphs.SimpleDiGraph` in the method signature or explicitly `import SimpleGraphs: SimpleDiGraph`. 3730.0 ms ✓ SimpleValueGraphs 9845.8 ms ✓ WhereTraits 3137.6 ms ✓ CliqueTrees → TreeWidthSolverExt 2992.0 ms ✓ Distributions → DistributionsChainRulesCoreExt 3074.8 ms ✓ Distributions → DistributionsTestExt 4705.5 ms ✓ OMEinsumContractionOrders 5998.4 ms ✓ OMEinsum WARNING: method definition for #add_layer_directedness!#394 at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:337 declares type variable H but does not use it. WARNING: Method definition degree(M, V) where {M<:(MultilayerGraphs.AbstractMultilayerGraph{T, U} where U<:Real where T<:Integer), V<:(MultilayerGraphs.MultilayerVertex{S} where S)} in module MultilayerGraphs at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:332 overwritten on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 14313.4 ms ? MultilayerGraphs 104 dependencies successfully precompiled in 315 seconds. 39 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 4 dependencies had output during precompilation: ┌ TensorOperations │ ┌ Info: TensorOperations can optionally be instructed to precompile several functions, which can be used to reduce the time to first execution (TTFX). │ │ This is disabled by default as this can take a while on some machines, and is only relevant for contraction-heavy workloads. │ │ │ │ To enable or disable precompilation, you can use the following script: │ │ │ │ ```julia │ │ using TensorOperations, Preferences │ │ set_preferences!(TensorOperations, "precompile_workload" => true; force=true) │ │ ``` │ │ │ └ This will create a `LocalPreferences.toml` file next to your current `Project.toml` file to store this setting in a persistent way. └ ┌ SimpleValueGraphs │ WARNING: Constructor for type "SimpleGraph" was extended in `SimpleValueGraphs` without explicit qualification or import. │ NOTE: Assumed "SimpleGraph" refers to `SimpleGraphs.SimpleGraph`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function SimpleGraph end`. │ Hint: To silence the warning, qualify `SimpleGraph` as `SimpleGraphs.SimpleGraph` in the method signature or explicitly `import SimpleGraphs: SimpleGraph`. │ WARNING: Constructor for type "SimpleDiGraph" was extended in `SimpleValueGraphs` without explicit qualification or import. │ NOTE: Assumed "SimpleDiGraph" refers to `SimpleGraphs.SimpleDiGraph`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function SimpleDiGraph end`. │ Hint: To silence the warning, qualify `SimpleDiGraph` as `SimpleGraphs.SimpleDiGraph` in the method signature or explicitly `import SimpleGraphs: SimpleDiGraph`. └ ┌ DataTypesBasic │ WARNING: method definition for promote_typejoin at /home/pkgeval/.julia/packages/DataTypesBasic/1o2ng/src/promote_type.jl:214 declares type variable L but does not use it. └ ┌ MultilayerGraphs │ WARNING: method definition for #add_layer_directedness!#394 at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:337 declares type variable H but does not use it. │ WARNING: Method definition degree(M, V) where {M<:(MultilayerGraphs.AbstractMultilayerGraph{T, U} where U<:Real where T<:Integer), V<:(MultilayerGraphs.MultilayerVertex{S} where S)} in module MultilayerGraphs at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:332 overwritten on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 321.47s ################################################################################ # Testing # Testing MultilayerGraphs Status `/tmp/jl_V6IPgf/Project.toml` [46ada45e] Agents v6.2.10 [31c24e10] Distributions v0.25.122 [86223c79] Graphs v1.13.1 [e6f89c97] LoggingExtras v1.2.0 ⌅ [626554b9] MetaGraphs v0.7.2 [af984530] MultilayerGraphs v1.1.5 [b43c691f] SimpleValueGraphs v0.4.1 [47aef6b3] SimpleWeightedGraphs v1.5.0 [2913bbd2] StatsBase v0.34.8 [56ddb016] Logging v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_V6IPgf/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [46ada45e] Agents v6.2.10 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 ⌅ [1dc0ca97] ArrayTools v0.2.7 [a9ab73d0] BatchedRoutines v0.2.2 [e2ed5e7c] Bijections v0.2.2 [50ba71b6] BitBasis v0.9.10 [d1d4a3ce] BitFlags v0.1.9 [336ed68f] CSV v0.10.15 [d360d2e6] ChainRulesCore v1.26.0 [60701a23] CliqueTrees v1.12.2 [944b1d66] CodecZlib v0.7.8 [08986516] Collects v1.0.0 [861a8166] Combinatorics v1.0.3 [38540f10] CommonSolve v0.2.4 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [83eed652] DataTypesBasic v2.0.3 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [c5caad1f] ExprParsers v1.2.3 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [3821ddf9] FixedSizeArrays v1.2.0 [86223c79] Graphs v1.13.1 [cd3eb016] HTTP v1.10.19 [49057fa9] HybridStructs v0.2.1 [34004b35] HypergeometricFunctions v0.3.28 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] 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LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Update message: Agents v6 This is a new major version of Agents.jl with lots of cool stuff! However, from this version onwards, we will stop posting update messages to the REPL console! If you want to be updated, follow this discourse post: https://discourse.julialang.org/t/agents-jl-v6-releases-announcement-post/111678 (and see the CHANGELOG.md file online for a list of changes!) WARNING: method definition for #add_layer_directedness!#394 at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:337 declares type variable H but does not use it. WARNING: Method definition degree(M, V) where {M<:(MultilayerGraphs.AbstractMultilayerGraph{T, U} where U<:Real where T<:Integer), V<:(MultilayerGraphs.MultilayerVertex{S} where S)} in module MultilayerGraphs at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:332 overwritten on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 1 dependency had output during precompilation: ┌ MultilayerGraphs │ [Output was shown above] └ WARNING: method definition for #add_layer_directedness!#394 at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:337 declares type variable H but does not use it. WARNING: Method definition degree(M, V) where {M<:(MultilayerGraphs.AbstractMultilayerGraph{T, U} where U<:Real where T<:Integer), V<:(MultilayerGraphs.MultilayerVertex{S} where S)} in module MultilayerGraphs at /home/pkgeval/.julia/packages/SimpleTraits/7VJph/src/SimpleTraits.jl:332 overwritten on the same line (check for duplicate calls to `include`). [ Info: Trying to sample a graphical sequence from the provided distribution Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a digraphical sequence from the two provided distributions Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0) and Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a graphical sequence from the provided distribution Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a digraphical sequence from the two provided distributions Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0) and Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a graphical sequence from the provided distribution Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a digraphical sequence from the two provided distributions Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0) and Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a graphical sequence from the provided distribution Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... [ Info: Trying to sample a digraphical sequence from the two provided distributions Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0) and Truncated(Normal{Float64}(μ=0.0, σ=1.0); lower=0.0, upper=10.0)... ┌ Debug: └ @ Main ~/.julia/packages/MultilayerGraphs/36zoT/test/layer.jl:47 ┌ Warning: Edge from vertex MV(Node("node_6"), :layer_sg, NamedTuple()) to vertex MV(Node("node_1"), :layer_sg, NamedTuple()) already doesn't exists in subgraph layer_sg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Warning: Edge from vertex MV(Node("node_6"), :layer_sg, NamedTuple()) to vertex MV(Node("node_1"), :layer_sg, NamedTuple()) already doesn't exists in subgraph layer_sg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Warning: Edge from vertex MV(Node("node_5"), :layer_sdg, NamedTuple()) to vertex MV(Node("node_3"), :layer_sdg, NamedTuple()) already doesn't exists in subgraph layer_sdg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Debug: └ @ Main ~/.julia/packages/MultilayerGraphs/36zoT/test/layer.jl:94 ┌ Warning: Edge from vertex MV(Node("node_7"), :layer_swg, NamedTuple()) to vertex MV(Node("node_4"), :layer_swg, NamedTuple()) already doesn't exists in subgraph layer_swg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Debug: └ @ Main ~/.julia/packages/MultilayerGraphs/36zoT/test/layer.jl:124 ┌ Warning: Edge from vertex MV(Node("node_1"), :layer_swdg, NamedTuple()) to vertex MV(Node("node_7"), :layer_swdg, NamedTuple()) already doesn't exists in subgraph layer_swdg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Warning: Edge from vertex MV(Node("node_1"), :layer_mg, NamedTuple()) to vertex MV(Node("node_7"), :layer_mg, NamedTuple()) already doesn't exists in subgraph layer_mg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Warning: Edge from vertex MV(Node("node_3"), :layer_vg, NamedTuple()) to vertex MV(Node("node_7"), :layer_vg, NamedTuple()) already doesn't exists in subgraph layer_vg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Warning: Edge from vertex MV(Node("node_2"), :layer_vodg, NamedTuple()) to vertex MV(Node("node_7"), :layer_vodg, NamedTuple()) already doesn't exists in subgraph layer_vodg. └ @ MultilayerGraphs ~/.julia/packages/MultilayerGraphs/36zoT/src/subgraphs/abstractsubgraph.jl:345 ┌ Debug: └ @ Main ~/.julia/packages/MultilayerGraphs/36zoT/test/interlayer.jl:18 [ Info: Trying to sample a graphical sequence from the provided distribution Truncated(Normal{Float64}(μ=10.0, σ=1.0); lower=0.0, upper=20.0)... ### LAYERS ┌───────────┬─────────────────────────────────────────────────────────────────── │ NAME │ U ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_sg │ Si ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_swg │ SimpleWeigh ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_mg │ MetaGr ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_vg │ ValGraph{Int64, Tuple{String}, Tuple{Float64, String}, Tuple{}, ⋯ └───────────┴─────────────────────────────────────────────────────────────────── 1 column omitted ### INTERLAYERS ┌───────────────────────────────┬───────────┬───────────┬─────────────────────── │ NAME │ LAYER 1 │ LAYER 2 │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_swg │ layer_sg │ layer_swg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_mg │ layer_sg │ layer_mg │ ValGraph{Int64, Tupl ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_swg_layer_mg │ layer_swg │ layer_mg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_vg │ layer_sg │ layer_vg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_vg_layer_swg │ layer_vg │ layer_swg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_mg_layer_vg │ layer_mg │ layer_vg │ ⋯ └───────────────────────────────┴───────────┴───────────┴─────────────────────── 2 columns omitted multilayergraph = `MultilayerGraph` with vertex type `Int64` and weight type `Float64`. nothing nothing [ Info: Trying to sample a digraphical sequence from the two provided distributions Truncated(Normal{Float64}(μ=10.0, σ=1.0); lower=0.0, upper=20.0) and Truncated(Normal{Float64}(μ=11.0, σ=1.0); lower=0.0, upper=22.0)... ### LAYERS ┌───────────┬─────────────────────────────────────────────────────────────────── │ NAME │ U ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_sg │ Si ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_swg │ SimpleWeigh ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_mg │ MetaGr ⋯ ├───────────┼─────────────────────────────────────────────────────────────────── │ layer_vg │ ValGraph{Int64, Tuple{String}, Tuple{Float64, String}, Tuple{}, ⋯ └───────────┴─────────────────────────────────────────────────────────────────── 1 column omitted ### INTERLAYERS ┌───────────────────────────────┬───────────┬───────────┬─────────────────────── │ NAME │ LAYER 1 │ LAYER 2 │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_swg │ layer_sg │ layer_swg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_mg │ layer_sg │ layer_mg │ ValGraph{Int64, Tupl ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_swg_layer_mg │ layer_swg │ layer_mg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_sg_layer_vg │ layer_sg │ layer_vg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_vg_layer_swg │ layer_vg │ layer_swg │ ⋯ ├───────────────────────────────┼───────────┼───────────┼─────────────────────── │ interlayer_layer_mg_layer_vg │ layer_mg │ layer_vg │ ⋯ └───────────────────────────────┴───────────┴───────────┴─────────────────────── 2 columns omitted multilayergraph = `MultilayerGraph` with vertex type `Int64` and weight type `Float64`. nothing nothing WARNING: Detected access to binding `Main.EigenAgent` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. Test Summary: | Pass Broken Total Time MultilayerGraphs | 724 23 747 5m53.0s layer | 110 7 117 29.7s interlayer | 85 85 47.5s undirected | 201 8 209 2m59.6s directed | 299 8 307 1m02.5s node_aligned_edge_colored_graphs | 6 6 10.4s agents_jl_integration | 21 21 19.8s utilities | 2 2 3.4s Testing MultilayerGraphs tests passed Testing completed after 841.88s PkgEval succeeded after 1199.9s