Package evaluation to test MicroscopyTools on Julia 1.14.0-DEV.87 (8bcaa34afa*) started at 2025-11-15T09:56:27.156


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 5.92s


################################################################################
# Installation
#

Installing MicroscopyTools...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [5e5ac434] + MicroscopyTools v0.2.2
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
  [d360d2e6] + ChainRulesCore v1.26.0
⌅ [3da002f7] + ColorTypes v0.11.5
  [34da2185] + Compat v4.18.1
  [b552c78f] + DiffRules v1.15.1
  [ffbed154] + DocStringExtensions v0.9.5
  [7a1cc6ca] + FFTW v1.10.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [613c443e] + IndexFunArrays v0.2.7
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [5e5ac434] + MicroscopyTools v0.2.2
⌅ [98581153] + NDTools v0.7.1
  [77ba4419] + NaNMath v1.1.3
  [6fe1bfb0] + OffsetArrays v1.17.0
  [5432bcbf] + PaddedViews v0.5.12
  [21216c6a] + Preferences v1.5.0
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [276daf66] + SpecialFunctions v2.6.1
  [10745b16] + Statistics v1.11.1
  [bc48ee85] + Tullio v0.3.8
  [f5851436] + FFTW_jll v3.3.11+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0
  [856f044c] + MKL_jll v2025.2.0+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [1317d2d5] + oneTBB_jll v2022.0.0+1
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.16.0+0
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.11.4
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.68.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 3.37s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    UndefVarError: `project_rel_path` not defined in `TestEnv`
│    Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value.
│    Stacktrace:
│     [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75
│     [2] test_dir_has_project_file
│       @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined]
│     [3] maybe_gen_project_override!
│       @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined]
│     [4] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12
│     [5] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9
│     [6] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [7] include(mod::Module, _path::String)
│       @ Base ./Base.jl:309
│     [8] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:344
│     [9] _start()
│       @ Base ./client.jl:577
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
   2005.7 ms  ✓ NDTools
ERROR: LoadError: UndefVarError: `_shrink` not defined in `Base`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty
    @ ./Base_compiler.jl:50 [inlined]
  [2] _precompile_()
    @ Tullio._Precompile_Base ~/.julia/packages/Tullio/2zyFP/src/precompile/precompile_Base.jl:77
  [3] top-level scope
    @ ~/.julia/packages/Tullio/2zyFP/src/precompile.jl:14
  [4] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [5] top-level scope
    @ ~/.julia/packages/Tullio/2zyFP/src/Tullio.jl:27
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [11] include_string
    @ ./loading.jl:3004 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [13] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/precompile.jl:13
in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/Tullio.jl:1
in expression starting at stdin:5

Precompilation completed after 23.77s


################################################################################
# Testing
#

     Testing MicroscopyTools
      Status `/tmp/jl_5OxoC2/Project.toml`
⌅ [3da002f7] ColorTypes v0.11.5
  [7a1cc6ca] FFTW v1.10.0
  [613c443e] IndexFunArrays v0.2.7
  [5e5ac434] MicroscopyTools v0.2.2
⌅ [98581153] NDTools v0.7.1
  [10745b16] Statistics v1.11.1
  [bc48ee85] Tullio v0.3.8
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_5OxoC2/Manifest.toml`
  [621f4979] AbstractFFTs v1.5.0
  [d360d2e6] ChainRulesCore v1.26.0
⌅ [3da002f7] ColorTypes v0.11.5
  [34da2185] Compat v4.18.1
  [b552c78f] DiffRules v1.15.1
  [ffbed154] DocStringExtensions v0.9.5
  [7a1cc6ca] FFTW v1.10.0
  [53c48c17] FixedPointNumbers v0.8.5
  [613c443e] IndexFunArrays v0.2.7
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.7.1
  [2ab3a3ac] LogExpFunctions v0.3.29
  [5e5ac434] MicroscopyTools v0.2.2
⌅ [98581153] NDTools v0.7.1
  [77ba4419] NaNMath v1.1.3
  [6fe1bfb0] OffsetArrays v1.17.0
  [5432bcbf] PaddedViews v0.5.12
  [21216c6a] Preferences v1.5.0
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [276daf66] SpecialFunctions v2.6.1
  [10745b16] Statistics v1.11.1
  [bc48ee85] Tullio v0.3.8
  [f5851436] FFTW_jll v3.3.11+0
  [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0
  [856f044c] MKL_jll v2025.2.0+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [1317d2d5] oneTBB_jll v2022.0.0+1
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.16.0+0
  [e37daf67] LibGit2_jll v1.9.1+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.11.4
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.7+0
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.68.0+1
  [3f19e933] p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
ERROR: LoadError: UndefVarError: `_shrink` not defined in `Base`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty
    @ ./Base_compiler.jl:50 [inlined]
  [2] _precompile_()
    @ Tullio._Precompile_Base ~/.julia/packages/Tullio/2zyFP/src/precompile/precompile_Base.jl:77
  [3] top-level scope
    @ ~/.julia/packages/Tullio/2zyFP/src/precompile.jl:14
  [4] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [5] top-level scope
    @ ~/.julia/packages/Tullio/2zyFP/src/Tullio.jl:27
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [11] include_string
    @ ./loading.jl:3004 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [13] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/precompile.jl:13
in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/Tullio.jl:1
in expression starting at stdin:5
ERROR: LoadError: UndefVarError: `_shrink` not defined in `Base`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty
    @ ./Base_compiler.jl:50 [inlined]
  [2] _precompile_()
    @ Tullio._Precompile_Base ~/.julia/packages/Tullio/2zyFP/src/precompile/precompile_Base.jl:77
  [3] top-level scope
    @ ~/.julia/packages/Tullio/2zyFP/src/precompile.jl:14
  [4] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [5] top-level scope
    @ ~/.julia/packages/Tullio/2zyFP/src/Tullio.jl:27
  [6] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
  [8] top-level scope
    @ stdin:5
  [9] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [11] include_string
    @ ./loading.jl:3004 [inlined]
 [12] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [13] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/precompile.jl:13
in expression starting at /home/pkgeval/.julia/packages/Tullio/2zyFP/src/Tullio.jl:1
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ Tullio
│  [Output was shown above]
└  
ERROR: LoadError: The following 1 package failed to precompile:

Tullio 
Failed to precompile Tullio [bc48ee85-29a4-5162-ae0b-a64e1601d4bc] to "/home/pkgeval/.julia/compiled/v1.14/Tullio/jl_Lg8z8U" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/MicroscopyTools/Sq39X/src/MicroscopyTools.jl:1
in expression starting at /home/pkgeval/.julia/packages/MicroscopyTools/Sq39X/test/runtests.jl:1

Testing failed after 33.45s

ERROR: LoadError: Package MicroscopyTools errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 80.44s: package fails to precompile