Package evaluation to test InMemoryDatasets on Julia 1.14.0-DEV.81 (f5f4c0174e*) started at 2025-11-15T08:59:14.651 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.19s ################################################################################ # Installation # Installing InMemoryDatasets... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [5c01b14b] + InMemoryDatasets v0.7.24 Updating `~/.julia/environments/v1.14/Manifest.toml` [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [5c01b14b] + InMemoryDatasets v0.7.24 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [b964fa9f] + LaTeXStrings v1.4.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [189a3867] + Reexport v1.2.2 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 1.18s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 278037.3 ms ✓ InMemoryDatasets 1 dependency successfully precompiled in 278 seconds. 31 already precompiled. Precompilation completed after 291.38s ################################################################################ # Testing # Testing InMemoryDatasets Status `/tmp/jl_4Usbns/Project.toml` [324d7699] CategoricalArrays v1.0.2 [861a8166] Combinatorics v1.0.3 [34da2185] Compat v4.18.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e7dc6d0d] DataValues v0.4.13 [5c01b14b] InMemoryDatasets v0.7.24 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [e1d29d7a] Missings v1.2.0 [6fe1bfb0] OffsetArrays v1.17.0 [2dfb63ee] PooledArrays v1.4.3 [08abe8d2] PrettyTables v3.1.0 [189a3867] Reexport v1.2.2 [10745b16] Statistics v1.11.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [1986cc42] Unitful v1.25.1 [ade2ca70] Dates v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_4Usbns/Manifest.toml` [324d7699] CategoricalArrays v1.0.2 [861a8166] Combinatorics v1.0.3 [34da2185] Compat v4.18.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [e7dc6d0d] DataValues v0.4.13 [5c01b14b] InMemoryDatasets v0.7.24 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [b964fa9f] LaTeXStrings v1.4.0 [e1d29d7a] Missings v1.2.0 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [91c51154] SentinelArrays v1.4.8 [a2af1166] SortingAlgorithms v1.2.2 [10745b16] Statistics v1.11.1 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [1986cc42] Unitful v1.25.1 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Testing Running tests... ┌ Warning: Julia started with single thread, to enable multithreaded functionalities in InMemoryDatasets.jl start Julia with multiple threads. └ @ InMemoryDatasets ~/.julia/packages/InMemoryDatasets/aSzMi/src/InMemoryDatasets.jl:208 ┌ Warning: Running with only one thread: correctness of parallel operations is not tested └ @ Main ~/.julia/packages/InMemoryDatasets/aSzMi/test/runtests.jl:13 Running tests: Test Summary: | Pass Total Time constructors | 50 50 29.4s Test Summary: | Pass Total Time Dataset keyword argument constructor | 21 21 0.6s Test Summary: | Pass Total Time Dataset constructor | 15 15 2.1s Test Summary: | Pass Total Time pair constructor | 20 20 2.1s Test Summary: | Pass Total Time associative | 14 14 7.4s Test Summary: | Pass Total Time vector constructors | 43 43 0.7s Test Summary: | Pass Total Time recyclers | 4 4 0.3s ┌ Warning: Using ErrorException to test field access is deprecated; use FieldError instead. │ caller = do_test_throws(result::Test.ExecutionResult, orig_expr::Any, extype::Any) at Test.jl:910 └ @ Core /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:910 Test Summary: | Pass Total Time constructor thrown exceptions | 17 17 3.3s Test Summary: | Pass Total Time column types | 3 3 1.2s Test Summary: | Pass Total Time expansion of Ref and 0-dimensional arrays | 2 2 0.4s Test Summary: | Pass Total Time broadcasting into 0 rows | 6 6 0.0s Test Summary: | Pass Total Time Dict constructor corner case | 5 5 6.3s Test Summary: | Pass Total Time removed constructors | 6 6 0.1s Test Summary: | Pass Total Time threading correctness tests | 24 24 13.9s PASSED: constructors.jl Test Summary: | Pass Total Time characters construction | 6 6 1.3s Test Summary: | Pass Total Time characters comparison | 10 10 0.9s PASSED: characters.jl Test Summary: | Pass Total Time make_unique - from DataFrames | 4 4 0.0s Test Summary: | Pass Total Time repeat count- from DataFrames | 4 4 2.5s Test Summary: | Pass Total Time repeat inner_outer- from DataFrames | 8 8 0.6s Test Summary: | Pass Total Time repeat! count- from DataFrames | 8 8 0.1s Test Summary: | Pass Total Time repeat! inner_outer- from DataFrames | 11 11 0.1s Test Summary: | Pass Total Time funname- from DataFrames | 1 1 0.0s Test Summary: | Pass Total Time repeat - passing `freq` | 17 17 10.6s Test Summary: | Pass Total Time IMD.hcat! with formats | 15 15 2.6s PASSED: utils.jl Test Summary: | Pass Total Time copy - SubDataset | 5 5 2.7s Test Summary: | Pass Total Time view -- Dataset | 77 77 12.9s Test Summary: | Pass Total Time view -- SubDataset | 62 62 10.9s Test Summary: | Pass Total Time getproperty, setproperty! and propertynames | 8 8 3.1s Test Summary: | Pass Total Time index | 11 11 1.5s Test Summary: | Pass Total Time deleteat! | 1 1 0.0s Test Summary: | Pass Total Time parent | 6 6 0.7s Test Summary: | Pass Total Time duplicate column | 1 1 0.2s Test Summary: | Pass Total Time conversion to Dataset | 9 9 1.6s Test Summary: | Pass Total Time setindex! in view | 4 4 1.9s Test Summary: | Pass Total Time SubDataset corner cases | 6 6 0.8s Test Summary: | Pass Total Time subdataset with no columns | 33 33 9.0s PASSED: subdataset.jl Test Summary: | Pass Total Time CartesianIndex | 24 24 0.3s Test Summary: | Pass Total Time broadcasting of AbstractDataset objects | 28 28 28.6s Test Summary: | Pass Total Time broadcasting of AbstractDataset objects thrown exceptions | 10 10 13.6s Test Summary: | Pass Total Time broadcasting data sets | 13 13 5.3s Test Summary: | Pass Total Time broadcasting of AbstractDataset objects corner cases | 34 34 40.8s ┌ Warning: broadcasting getproperty is deprecated for SubDataset and will be disallowed in the future. Use `ds[:, :x2] .= ... instead │ caller = top-level scope at broadcasting.jl:149 └ @ Core ~/.julia/packages/InMemoryDatasets/aSzMi/test/broadcasting.jl:149 Test Summary: | Pass Total Time normal data set and data set row in broadcasted assignment - one column | 121 121 19.9s Test Summary: | Pass Total Time normal data set and data set view in broadcasted assignment - two columns | 110 110 8.8s Test Summary: | Pass Total Time assignment to a whole data set and data set row | 11 11 1.9s Test Summary: | Pass Total Time extending data set in broadcasted assignment - one column | 42 42 1.6s Test Summary: | Pass Total Time empty data frame corner case | 203 203 4.6s Test Summary: | Pass Total Time test categorical values | 132 132 13.2s Test Summary: | Pass Total Time scalar broadcasting | 3 3 1.1s Test Summary: | Pass Total Time tuple broadcasting | 8 8 4.0s Test Summary: | Pass Total Time scalar on assignment side | 4 4 0.9s Test Summary: | Pass Total Time nothing test | 4 4 1.5s Test Summary: | Pass Total Time aliasing test | 165 165 20.3s Test Summary: | Pass Total Time @. test | 2 2 3.1s Test Summary: | Pass Total Time test common cases | 12 12 11.1s Test Summary: | Pass Total Time data set only on left hand side broadcasting assignment | 26 26 11.0s Test Summary: | Pass Total Time broadcasting with 3-dimensional object | 4 4 1.2s ┌ Warning: broadcasting getproperty is deprecated for SubDataset and will be disallowed in the future. Use `ds[:, :x1] .= ... instead │ caller = top-level scope at broadcasting.jl:1410 └ @ Core ~/.julia/packages/InMemoryDatasets/aSzMi/test/broadcasting.jl:1410 Test Summary: | Pass Total Time additional checks of post-! broadcasting rules | 163 163 9.9s Test Summary: | Pass Total Time DatasetRow getproperty broadcasted assignment | 8 8 1.4s Test Summary: | Pass Total Time make sure that : is in place and ! allocates | 10 10 0.9s Test Summary: | Pass Total Time add new correct rules for ds[row, col] .= v broadcasting | 12 12 0.0s Test Summary: | Pass Total Time broadcasting into ds[!, cols] | 223 223 3.6s Test Summary: | Pass Total Time broadcasting over heterogenous columns | 1 1 1.2s Test Summary: | Pass Total Time @views on ds[!, col] | 3 3 2.0s Test Summary: | Pass Total Time broadcasting of ds[:, col] = value | 12 12 0.5s Test Summary: | Total Time broadcasting of getproperty | 0 0.4s PASSED: broadcasting.jl Test Summary: | Pass Total Time duplicates, unique, unique! with extra argument | 229 229 3m22.3s Test Summary: | Pass Total Time completecases and dropmissing | 348 348 16.7s Test Summary: | Pass Total Time bigint tests | 18 18 14.3s Test Summary: | Pass Total Time filtering | 45 45 27.9s Test Summary: | Pass Total Time ffill, ffill!, bfill, bfill! | 8 8 15.2s PASSED: data.jl Test Summary: | Pass Total Time general reduction | 215 215 2m55.7s Test Summary: | Pass Total Time cum*/! - sort/! | 28 28 14.5s Test Summary: | Pass Total Time byrow with NTuple as cols | 2 2 3.0s Test Summary: | Pass Total Time byrow - nunique | 4 4 4.7s PASSED: byrow.jl Test Summary: | Pass Total Time Basic usage | 112 112 2m05.2s Test Summary: | Pass Total Time _find_starts_of_groups | 78 78 8.7s Test Summary: | Pass Total Time bigInt test set | 36 36 15.6s Test Summary: | Pass Total Time sort views | 608 608 10.7s Test Summary: | Pass Total Time issorted/issorted! | 28056 28056 1m08.0s PASSED: sort.jl Test Summary: | Pass Total Time parent | 24 24 45.3s Test Summary: | Pass Total Time consistency | 4 4 0.5s Test Summary: | Pass Total Time general usage | 19 19 20.8s Test Summary: | Pass Total Time grouping for PAs - From DataFrames.jl | 786 786 16.9s Test Summary: | Pass Total Time combine - set 1 | 49 49 1m04.9s Test Summary: | Pass Total Time combine - set 2 | 73 73 53.6s Test Summary: | Pass Total Time combine - set 3 | 16 16 23.1s Test Summary: | Pass Total Time combine - set4 - checking normalize_combine | 11 11 17.3s Test Summary: | Pass Total Time modifying and combining views | 48 48 1m21.8s Test Summary: | Pass Total Time eachgroup iterator | 10 10 1.3s Test Summary: | Pass Total Time byrow with tuple input | 11 11 13.1s Test Summary: | Pass Total Time combine and modify with Vector{Vector} | 5 5 4.9s Test Summary: | Pass Total Time bug in gatheby with stable=true | 4 4 4.1s PASSED: grouping.jl Test Summary: | Pass Total Time general usage | 2693 2693 6m01.9s Test Summary: | Pass Total Time Test empty inputs 1 | 18 18 1.4s Test Summary: | Pass Total Time Test empty inputs 2 | 18 18 0.1s Test Summary: | Pass Total Time all joins | 799 799 1m28.9s Test Summary: | Pass Total Time joins with categorical columns and no matching rows - from DataFrames test sets | 31 31 4.5s Test Summary: | Pass Total Time range join | 218 218 1m50.3s Test Summary: | Pass Total Time update!, update | 84 84 22.3s Test Summary: | Pass Total Time compare, obs_id, multiple_match | 151 151 1m41.2s PASSED: join.jl Test Summary: | Pass Total Time general usage | 48 48 1m29.4s Test Summary: | Pass Total Time Outputs - Checking types | 27 27 23.0s Test Summary: | Pass Total Time passing Tuple as cols | 3 3 5.0s Test Summary: | Pass Total Time flatten column | 142 142 45.4s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 17 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm5APInteqEm at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) unknown function (ip: 0x7ffd0df6280f) at (unknown file) unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_65710.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] start_task at /source/src/task.c:1272 unknown function (ip: (nil)) at (unknown file) ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007dd0097fc010 Total snapshots: 27. Utilization: 100% ╎25 @Base/client.jl:577 _start() ╎ 25 @Base/client.jl:310 exec_options(opts::Base.JLOptions) ╎ 25 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ 25 @Base/Base.jl:311 (::Base.IncludeInto)(fname::String) ╎ 25 @Base/Base.jl:310 include(mapexpr::Function, mod::Module, _path::Str… ╎ 25 @Base/loading.jl:3054 _include(mapexpr::Function, mod::Module, _pat… ╎ ╎ 25 @Base/loading.jl:2994 include_string(mapexpr::typeof(identity), mo… ╎ ╎ 25 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 25 @InMemoryDatasets/…jl:37 top-level scope ╎ ╎ 25 @Base/Base.jl:311 (::Base.IncludeInto)(fname::String) ╎ ╎ 25 @Base/Base.jl:310 include(mapexpr::Function, mod::Module, _pat… ╎ ╎ ╎ 25 @Base/loading.jl:3054 _include(mapexpr::Function, mod::Module… ╎ ╎ ╎ 25 @Base/loading.jl:2994 include_string(mapexpr::typeof(identit… 24╎ ╎ ╎ 25 @Base/boot.jl:489 eval(m::Module, e::Any) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007ccbc61f7ee0 Total snapshots: 582. Utilization: 0% ╎582 @Base/task.jl:1168 wait_forever() 581╎ 582 @Base/task.jl:1246 wait() PkgEval terminated after 2734.57s: test duration exceeded the time limit