Package evaluation to load GeoClustering on Julia 1.14.0-DEV.87 (8bcaa34afa*) started at 2025-11-15T15:59:51.203


################################################################################
# Set-up
#


Set-up completed after 0.11s


################################################################################
# Installation
#

Installing GeoClustering...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [7472b188] + GeoClustering v0.5.2
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [47edcb42] + ADTypes v1.18.0
  [1520ce14] + AbstractTrees v0.4.5
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.4.0
  [66dad0bd] + AliasTables v1.1.3
  [dce04be8] + ArgCheck v2.5.0
⌅ [ec485272] + ArnoldiMethod v0.2.0
  [4fba245c] + ArrayInterface v7.22.0
  [39de3d68] + AxisArrays v0.4.8
  [198e06fe] + BangBang v0.4.6
  [9718e550] + Baselet v0.1.1
  [0e736298] + Bessels v0.2.8
⌅ [324d7699] + CategoricalArrays v0.10.8
  [d360d2e6] + ChainRulesCore v1.26.0
  [7a955b69] + CircularArrays v1.4.0
  [aaaa29a8] + Clustering v0.15.8
  [5900dafe] + CoDa v1.5.0
  [3da002f7] + ColorTypes v0.12.1
⌅ [9cc86067] + ColumnSelectors v0.1.1
  [861a8166] + Combinatorics v1.0.3
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [a33af91c] + CompositionsBase v0.1.2
  [187b0558] + ConstructionBase v1.6.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
⌅ [6cb2f572] + DataScienceTraits v0.1.0
  [864edb3b] + DataStructures v0.19.3
  [e2d170a0] + DataValueInterfaces v1.0.0
  [244e2a9f] + DefineSingletons v0.1.2
  [ab46fb84] + DensityRatioEstimation v1.3.1
  [85a47980] + Dictionaries v0.4.5
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [a0c0ee7d] + DifferentiationInterface v0.7.11
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.122
  [ffbed154] + DocStringExtensions v0.9.5
  [4e289a0a] + EnumX v1.0.5
  [1a297f60] + FillArrays v1.15.0
  [6a86dc24] + FiniteDiff v2.29.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [f6369f11] + ForwardDiff v1.3.0
  [46192b85] + GPUArraysCore v0.2.0
  [7472b188] + GeoClustering v0.5.2
⌅ [323cb8eb] + GeoStatsBase v0.35.3
⌃ [e502b557] + GeoTables v1.9.1
  [34004b35] + HypergeometricFunctions v0.3.28
  [313cdc1a] + Indexing v1.1.1
  [22cec73e] + InitialValues v0.3.1
  [8197267c] + IntervalSets v0.7.12
  [3587e190] + InverseFunctions v0.1.17
  [92d709cd] + IrrationalConstants v0.2.6
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
  [b964fa9f] + LaTeXStrings v1.4.0
  [d3d80556] + LineSearches v7.4.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
⌅ [30fc2ffe] + LossFunctions v0.11.2
  [e80e1ace] + MLJModelInterface v1.12.0
  [1914dd2f] + MacroTools v0.5.16
⌅ [eacbb407] + Meshes v0.35.21
  [128add7d] + MicroCollections v0.2.0
  [e1d29d7a] + Missings v1.2.0
  [d41bc354] + NLSolversBase v7.10.0
  [77ba4419] + NaNMath v1.1.3
  [b8a86587] + NearestNeighbors v0.4.23
  [2f6b4ddb] + NelderMead v0.4.0
  [6fe1bfb0] + OffsetArrays v1.17.0
  [429524aa] + Optim v1.13.2
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.36
  [d96e819e] + Parameters v0.12.3
  [85a6dd25] + PositiveFactorizations v0.2.4
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
⌅ [08abe8d2] + PrettyTables v2.4.0
  [92933f4c] + ProgressMeter v1.11.0
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [94ee1d12] + Quaternions v0.7.6
  [b3c3ace0] + RangeArrays v0.3.2
  [c1ae055f] + RealDot v0.1.0
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.9.0
  [6038ab10] + Rotations v1.7.1
  [321657f4] + ScientificTypes v3.1.1
  [30f210dd] + ScientificTypesBase v3.0.0
  [efcf1570] + Setfield v1.1.2
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [03a91e81] + SplitApplyCombine v1.2.3
  [171d559e] + SplittablesBase v0.1.15
  [90137ffa] + StaticArrays v1.9.15
  [1e83bf80] + StaticArraysCore v1.4.4
  [64bff920] + StatisticalTraits v3.5.0
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.8
  [4c63d2b9] + StatsFuns v1.5.2
  [88034a9c] + StringDistances v0.11.3
  [892a3eda] + StringManipulation v0.4.1
⌅ [e5d66e97] + TableDistances v0.2.1
  [3783bdb8] + TableTraits v1.0.1
⌃ [0d432bfd] + TableTransforms v1.21.0
  [bd369af6] + Tables v1.12.1
  [28d57a85] + Transducers v0.4.85
  [28dd2a49] + TransformsBase v1.6.0
  [9d95f2ec] + TypedTables v1.4.6
  [3a884ed6] + UnPack v1.0.2
  [1986cc42] + Unitful v1.25.1
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 6.37s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
    921.2 ms  ✓ DataScienceTraits → DataScienceTraitsCategoricalArraysExt
   3591.5 ms  ✓ DensityRatioEstimation
   3224.5 ms  ✓ Clustering
   5301.1 ms  ✓ Meshes
   5982.5 ms  ✓ ScientificTypes
   3758.5 ms  ✓ CoDa
   2260.0 ms  ✓ DensityRatioEstimation → DensityRatioEstimationOptimExt
   5143.7 ms  ✓ GeoTables
   2509.3 ms  ✓ DataScienceTraits → DataScienceTraitsCoDaExt
   4633.4 ms  ✓ TableDistances
   6750.9 ms  ✓ TableTransforms
WARNING: Imported binding TableTransforms.ColSpec was undeclared at import time during import to GeoStatsBase.
WARNING: Imported binding TableTransforms.Col was undeclared at import time during import to GeoStatsBase.
WARNING: Imported binding TableTransforms.AllSpec was undeclared at import time during import to GeoStatsBase.
WARNING: Imported binding TableTransforms.NoneSpec was undeclared at import time during import to GeoStatsBase.
WARNING: Imported binding TableTransforms.colspec was undeclared at import time during import to GeoStatsBase.
WARNING: Imported binding TableTransforms.choose was undeclared at import time during import to GeoStatsBase.
WARNING: Method definition partitioninds(Random.AbstractRNG, GeoTables.AbstractGeoTable, Meshes.PartitionMethod) in module GeoTables at /home/pkgeval/.julia/packages/GeoTables/pM3bS/src/indices.jl:5 overwritten in module GeoStatsBase at /home/pkgeval/.julia/packages/GeoStatsBase/McgmE/src/geotables.jl:5.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
   6642.6 ms  ? GeoStatsBase
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("323cb8eb-fbf6-51c0-afd0-f8fba70507b2"), "GeoStatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2717
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2576
  [4] macro expansion
    @ ./loading.jl:2504 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [7] require
    @ ./loading.jl:2444 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/GeoClustering/7vdqA/src/GeoClustering.jl:9
 [13] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [18] include_string
    @ ./loading.jl:3004 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [20] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/GeoClustering/7vdqA/src/GeoClustering.jl:5
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ GeoStatsBase
│  WARNING: Imported binding TableTransforms.ColSpec was undeclared at import time during import to GeoStatsBase.
│  WARNING: Imported binding TableTransforms.Col was undeclared at import time during import to GeoStatsBase.
│  WARNING: Imported binding TableTransforms.AllSpec was undeclared at import time during import to GeoStatsBase.
│  WARNING: Imported binding TableTransforms.NoneSpec was undeclared at import time during import to GeoStatsBase.
│  WARNING: Imported binding TableTransforms.colspec was undeclared at import time during import to GeoStatsBase.
│  WARNING: Imported binding TableTransforms.choose was undeclared at import time during import to GeoStatsBase.
│  WARNING: Method definition partitioninds(Random.AbstractRNG, GeoTables.AbstractGeoTable, Meshes.PartitionMethod) in module GeoTables at /home/pkgeval/.julia/packages/GeoTables/pM3bS/src/indices.jl:5 overwritten in module GeoStatsBase at /home/pkgeval/.julia/packages/GeoStatsBase/McgmE/src/geotables.jl:5.
│  ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
└  

Precompilation completed after 65.27s


################################################################################
# Loading
#

Loading GeoClustering...
WARNING: Imported binding TableTransforms.ColSpec was undeclared at import time during import to GeoStatsBase.
WARNING: Imported binding TableTransforms.Col was undeclared at import time during import to GeoStatsBase.
WARNING: Imported binding TableTransforms.AllSpec was undeclared at import time during import to GeoStatsBase.
WARNING: Imported binding TableTransforms.NoneSpec was undeclared at import time during import to GeoStatsBase.
WARNING: Imported binding TableTransforms.colspec was undeclared at import time during import to GeoStatsBase.
WARNING: Imported binding TableTransforms.choose was undeclared at import time during import to GeoStatsBase.
WARNING: Method definition partitioninds(Random.AbstractRNG, GeoTables.AbstractGeoTable, Meshes.PartitionMethod) in module GeoTables at /home/pkgeval/.julia/packages/GeoTables/pM3bS/src/indices.jl:5 overwritten in module GeoStatsBase at /home/pkgeval/.julia/packages/GeoStatsBase/McgmE/src/geotables.jl:5.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("323cb8eb-fbf6-51c0-afd0-f8fba70507b2"), "GeoStatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2717
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2576
  [4] macro expansion
    @ ./loading.jl:2504 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [7] require
    @ ./loading.jl:2444 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/GeoClustering/7vdqA/src/GeoClustering.jl:9
 [13] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [18] include_string
    @ ./loading.jl:3004 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [20] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/GeoClustering/7vdqA/src/GeoClustering.jl:5
in expression starting at stdin:5

  2 dependencies had output during precompilation:
┌ GeoStatsBase
│  WARNING: Imported binding TableTransforms.ColSpec was undeclared at import time during import to GeoStatsBase.
│  WARNING: Imported binding TableTransforms.Col was undeclared at import time during import to GeoStatsBase.
│  WARNING: Imported binding TableTransforms.AllSpec was undeclared at import time during import to GeoStatsBase.
│  WARNING: Imported binding TableTransforms.NoneSpec was undeclared at import time during import to GeoStatsBase.
│  WARNING: Imported binding TableTransforms.colspec was undeclared at import time during import to GeoStatsBase.
│  WARNING: Imported binding TableTransforms.choose was undeclared at import time during import to GeoStatsBase.
│  WARNING: Method definition partitioninds(Random.AbstractRNG, GeoTables.AbstractGeoTable, Meshes.PartitionMethod) in module GeoTables at /home/pkgeval/.julia/packages/GeoTables/pM3bS/src/indices.jl:5 overwritten in module GeoStatsBase at /home/pkgeval/.julia/packages/GeoStatsBase/McgmE/src/geotables.jl:5.
│  ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
└  
┌ GeoClustering
│  [Output was shown above]
└  
ERROR: The following 1 package failed to precompile:

GeoClustering 
Failed to precompile GeoClustering [7472b188-6dde-460e-bd07-96c4bc049f7e] to "/home/pkgeval/.julia/compiled/v1.14/GeoClustering/jl_H9BCRv" (ProcessExited(1)).


Loading failed after 15.67s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using GeoClustering'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:611 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:526
 [3] run(::Cmd)
   @ Base ./process.jl:523
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [7] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 101.6s: illegal method overwrites during precompilation