Package evaluation to load BiochemicalAlgorithms on Julia 1.14.0-DEV.87 (8bcaa34afa*) started at 2025-11-15T15:43:18.042


################################################################################
# Set-up
#


Set-up completed after 0.1s


################################################################################
# Installation
#

Installing BiochemicalAlgorithms...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [9d651bdf] + BiochemicalAlgorithms v0.5.5
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [47edcb42] + ADTypes v1.18.0
  [1520ce14] + AbstractTrees v0.4.5
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.4.0
  [ec485272] + ArnoldiMethod v0.4.0
  [4fba245c] + ArrayInterface v7.22.0
  [15f4f7f2] + AutoHashEquals v2.2.0
  [47718e42] + BioGenerics v0.1.5
  [de9282ab] + BioStructures v4.7.0
  [3c28c6f8] + BioSymbols v5.2.0
  [9d651bdf] + BiochemicalAlgorithms v0.5.5
  [336ed68f] + CSV v0.10.15
  [159f3aea] + Cairo v1.1.1
  [49dc2e85] + Calculus v0.5.2
  [69e1c6dd] + CellListMap v0.9.14
  [0b6fb165] + ChunkCodecCore v1.0.0
  [4c0bbee4] + ChunkCodecLibZlib v1.0.0
  [55437552] + ChunkCodecLibZstd v1.0.0
  [ae650224] + ChunkSplitters v3.1.2
  [944b1d66] + CodecZlib v0.7.8
  [3da002f7] + ColorTypes v0.12.1
  [5ae59095] + Colors v0.13.1
  [38540f10] + CommonSolve v0.2.4
  [34da2185] + Compat v4.18.1
  [a33af91c] + CompositionsBase v0.1.2
  [88cd18e8] + ConsoleProgressMonitor v0.1.2
  [187b0558] + ConstructionBase v1.6.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.1
  [864edb3b] + DataStructures v0.19.3
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [a0c0ee7d] + DifferentiationInterface v0.7.11
  [ffbed154] + DocStringExtensions v0.9.5
  [4e289a0a] + EnumX v1.0.5
  [e2ba6199] + ExprTools v0.1.10
  [55351af7] + ExproniconLite v0.10.14
  [411431e0] + Extents v0.1.6
  [9aa1b823] + FastClosures v0.3.2
  [5789e2e9] + FileIO v1.17.1
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.15.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [1fa38f19] + Format v1.3.7
  [069b7b12] + FunctionWrappers v1.1.3
  [77dc65aa] + FunctionWrappersWrappers v0.1.3
  [46192b85] + GPUArraysCore v0.2.0
  [5c1252a2] + GeometryBasics v0.5.10
  [a2bd30eb] + Graphics v1.1.3
  [86223c79] + Graphs v1.13.1
  [076d061b] + HashArrayMappedTries v0.2.0
  [d25df0c9] + Inflate v0.1.5
  [842dd82b] + InlineStrings v1.4.5
  [8197267c] + IntervalSets v0.7.12
  [3587e190] + InverseFunctions v0.1.17
  [41ab1584] + InvertedIndices v1.3.1
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [033835bb] + JLD2 v0.6.2
  [692b3bcd] + JLLWrappers v1.7.1
⌅ [682c06a0] + JSON v0.21.4
  [0f8b85d8] + JSON3 v1.14.3
  [ae98c720] + Jieko v0.2.1
  [5be7bae1] + LBFGSB v0.4.1
  [b964fa9f] + LaTeXStrings v1.4.0
  [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1
  [e6f89c97] + LoggingExtras v1.2.0
  [1914dd2f] + MacroTools v0.5.16
⌅ [20f20a25] + MakieCore v0.9.5
  [eff96d63] + Measurements v2.14.1
  [c116f080] + Mendeleev v1.0.2
  [626554b9] + MetaGraphs v0.8.1
  [e1d29d7a] + Missings v1.2.0
⌅ [6c89ec66] + MolecularGraph v0.19.1
  [2e0e35c7] + Moshi v0.3.7
  [77ba4419] + NaNMath v1.1.3
  [510215fc] + Observables v0.5.5
⌅ [7f7a1694] + Optimization v4.8.0
⌅ [bca83a33] + OptimizationBase v2.14.0
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.36
  [d96e819e] + Parameters v0.12.3
  [69de0a69] + Parsers v2.8.3
  [5ad8b20f] + PhysicalConstants v0.2.4
  [2dfb63ee] + PooledArrays v1.4.3
  [d236fae5] + PreallocationTools v0.4.34
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
⌅ [08abe8d2] + PrettyTables v2.4.0
  [33c8b6b6] + ProgressLogging v0.1.5
  [92933f4c] + ProgressMeter v1.11.0
  [94ee1d12] + Quaternions v0.7.6
  [44044271] + RDKitMinimalLib v1.2.0
  [c1ae055f] + RealDot v0.1.0
  [3cdcf5f2] + RecipesBase v1.3.4
  [731186ca] + RecursiveArrayTools v3.39.0
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [f2b01f46] + Roots v2.2.10
  [6038ab10] + Rotations v1.7.1
  [7e49a35a] + RuntimeGeneratedFunctions v0.5.16
  [0bca4576] + SciMLBase v2.127.0
  [a6db7da4] + SciMLLogging v1.5.0
  [c0aeaf25] + SciMLOperators v1.11.0
  [431bcebd] + SciMLPublic v1.0.0
  [53ae85a6] + SciMLStructures v1.7.0
  [7e506255] + ScopedValues v1.5.0
  [91c51154] + SentinelArrays v1.4.8
  [efcf1570] + Setfield v1.1.2
  [699a6c99] + SimpleTraits v0.9.5
  [a2af1166] + SortingAlgorithms v1.2.2
  [9f842d2f] + SparseConnectivityTracer v1.1.3
  [0a514795] + SparseMatrixColorings v0.4.23
  [90137ffa] + StaticArrays v1.9.15
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [69024149] + StringEncodings v0.3.7
  [892a3eda] + StringManipulation v0.4.1
  [856f2bd8] + StructTypes v1.11.0
⌃ [2efcf032] + SymbolicIndexingInterface v0.3.44
  [ab02a1b2] + TableOperations v1.2.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [5d786b92] + TerminalLoggers v0.1.7
  [1c621080] + TestItems v1.0.0
  [3bb67fe8] + TranscodingStreams v0.11.3
  [3a884ed6] + UnPack v1.0.2
  [1986cc42] + Unitful v1.25.1
  [a7773ee8] + UnitfulAtomic v1.0.0
  [ea10d353] + WeakRefStrings v1.4.2
  [76eceee3] + WorkerUtilities v1.6.1
  [ddb6d928] + YAML v0.4.16
  [6e34b625] + Bzip2_jll v1.0.9+0
  [83423d85] + Cairo_jll v1.18.5+0
  [5ae413db] + EarCut_jll v2.2.4+0
  [2e619515] + Expat_jll v2.7.3+0
  [a3f928ae] + Fontconfig_jll v2.17.1+0
  [d7e528f0] + FreeType2_jll v2.13.4+0
  [559328eb] + FriBidi_jll v1.0.17+0
  [b0724c58] + GettextRuntime_jll v0.22.4+0
  [7746bdde] + Glib_jll v2.86.0+0
  [3b182d85] + Graphite2_jll v1.3.15+0
  [2e76f6c2] + HarfBuzz_jll v8.5.1+0
  [1d63c593] + LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] + LZO_jll v2.10.3+0
  [81d17ec3] + L_BFGS_B_jll v3.0.1+0
  [e9f186c6] + Libffi_jll v3.4.7+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [4b2f31a3] + Libmount_jll v2.41.2+0
  [38a345b3] + Libuuid_jll v2.41.2+0
  [36c8627f] + Pango_jll v1.57.0+0
⌅ [30392449] + Pixman_jll v0.44.2+0
  [03d1d220] + RDKit_jll v2022.9.5+0
  [4f6342f7] + Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0
  [a3789734] + Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] + Xorg_libXext_jll v1.3.7+0
  [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0
  [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0
  [c5fb5394] + Xorg_xtrans_jll v1.6.0+0
⌅ [28df3c45] + boost_jll v1.76.0+1
  [f6050b86] + coordgenlibs_jll v3.0.2+0
  [172afb32] + libinchi_jll v1.6.0+0
  [b53b4c65] + libpng_jll v1.6.50+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.16.0+0
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.11.4
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.68.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 7.23s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
  65215.3 ms  ✓ DataFrames
   1200.8 ms  ✓ libinchi_jll
   1187.8 ms  ✓ coordgenlibs_jll
  10945.2 ms  ✓ BioStructures
   3057.6 ms  ✓ RecursiveArrayTools
   1442.2 ms  ✓ boost_jll
  20210.4 ms  ✓ CellListMap
   6789.1 ms  ✓ MetaGraphs
   7941.1 ms  ✓ MakieCore
   5477.2 ms  ✓ BioStructures → BioStructuresDataFramesExt
   1396.7 ms  ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt
   1008.2 ms  ✓ RecursiveArrayTools → RecursiveArrayToolsTablesExt
    945.5 ms  ✓ RecursiveArrayTools → RecursiveArrayToolsMeasurementsExt
  18722.9 ms  ✓ SciMLBase
   1171.5 ms  ✓ RDKit_jll
   6488.1 ms  ✓ BioStructures → BioStructuresGraphsExt
   2345.2 ms  ✓ SciMLBase → SciMLBaseMeasurementsExt
   2342.1 ms  ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt
   1017.3 ms  ✓ RDKitMinimalLib
   4955.3 ms  ✓ OptimizationBase
  19741.4 ms  ✓ MolecularGraph
   4662.5 ms  ✓ Optimization
  40149.1 ms  ✓ BiochemicalAlgorithms
  23 dependencies successfully precompiled in 233 seconds. 237 already precompiled.

Precompilation completed after 237.42s


################################################################################
# Loading
#

Loading BiochemicalAlgorithms...

Loading completed after 22.5s

PkgEval succeeded after 279.16s