Package evaluation to load BiobakeryUtils on Julia 1.14.0-DEV.87 (8bcaa34afa*) started at 2025-11-15T13:11:00.619


################################################################################
# Set-up
#


Set-up completed after 0.13s


################################################################################
# Installation
#

Installing BiobakeryUtils...
   Resolving package versions...
   Installed Conda ─ v1.10.3
    Updating `~/.julia/environments/v1.14/Project.toml`
  [fa5322f5] + BiobakeryUtils v0.7.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [7d9fca2a] + Arpack v0.5.4
  [fa5322f5] + BiobakeryUtils v0.7.0
  [336ed68f] + CSV v0.10.15
  [944b1d66] + CodecZlib v0.7.8
  [34da2185] + Compat v4.18.1
  [8f4d0f93] + Conda v1.10.3
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.3
  [e2d170a0] + DataValueInterfaces v1.0.0
⌅ [85a47980] + Dictionaries v0.3.29
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.122
  [ffbed154] + DocStringExtensions v0.9.5
  [a58aae7d] + EcoBase v0.1.7
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.15.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [313cdc1a] + Indexing v1.1.1
  [842dd82b] + InlineStrings v1.4.5
  [bd334432] + InlineTest v0.2.0
  [92d709cd] + IrrationalConstants v0.2.6
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
  [682c06a0] + JSON v1.3.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [3bd8f0ae] + Microbiome v0.10.1
  [e1d29d7a] + Missings v1.2.0
  [6f286f6a] + MultivariateStats v0.10.3
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.36
  [69de0a69] + Parsers v2.8.3
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [e0db7c4e] + ReTest v0.3.4
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [79098fc4] + Rmath v0.9.0
  [91c51154] + SentinelArrays v1.4.8
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.8
  [4c63d2b9] + StatsFuns v1.5.2
  [ec057cc2] + StructUtils v2.6.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [3bb67fe8] + TranscodingStreams v0.11.3
  [81def892] + VersionParsing v1.3.0
  [ea10d353] + WeakRefStrings v1.4.2
  [76eceee3] + WorkerUtilities v1.6.1
⌅ [68821587] + Arpack_jll v3.5.1+1
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.16.0+0
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.11.4
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.68.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
    Building Conda → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log`

Installation completed after 12.32s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
WARNING: Imported binding Test.pop_testset was undeclared at import time during import to Testset.
WARNING: Imported binding Test.push_testset was undeclared at import time during import to Testset.
┌ Error: Precompilation failed, this is the captured stdout (114 chars):
└ @ ReTest ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:36
                                   Pass  |  Time / Compile / GC |   Alloc   ΔRSS |
ReTest._ReTestPrecompileTests:

┌ Error: And this is the captured stderr (0 chars):
└ @ ReTest ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:39

ERROR: LoadError: TaskFailedException
Stacktrace:
  [1] #wait#580
    @ ./task.jl:363 [inlined]
  [2] wait
    @ ./task.jl:360 [inlined]
  [3] retest(::Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}, ::Vararg{Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}}; dry::Bool, stats::Bool, shuffle::Bool, group::Bool, verbose::Bool, recursive::Bool, id::Nothing, strict::Bool, dup::Bool, static::Nothing, load::Bool, seed::Bool, marks::Bool, tag::Vector{Symbol}, spin::Bool, clear::Bool)
    @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1186
  [4] kwcall(::@NamedTuple{recursive::Bool, stats::Bool, spin::Bool}, ::typeof(InlineTest.retest), ::Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}, ::Vararg{Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}})
    @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:750
  [5] #137
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:26 [inlined]
  [6] redirect_stdio(f::ReTest.var"#137#138"; stdin::Nothing, stderr::Pipe, stdout::Pipe)
    @ Base ./stream.jl:1449
  [7] kwcall(::@NamedTuple{stderr::Pipe, stdout::Pipe}, ::typeof(redirect_stdio), f::Function)
    @ Base ./stream.jl:1412
  [8] macro expansion
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:25 [inlined]
  [9] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [10] macro expansion
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:23 [inlined]
 [11] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:121 [inlined]
 [12] top-level scope
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:118
 [13] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [14] top-level scope
    @ ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1751
 [15] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [16] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [17] top-level scope
    @ stdin:5
 [18] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [20] include_string
    @ ./loading.jl:3004 [inlined]
 [21] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [22] _start()
    @ Base ./client.jl:577

    nested task error: TaskFailedException
    
        nested task error: UndefVarError: `push_testset` not defined in `ReTest.Testset`
        Suggestion: this global was defined as `Test.push_testset` but not assigned a value.
        Stacktrace:
          [1] top-level scope
            @ ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:517
          [2] macro expansion
            @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:12 [inlined]
          [3] macro expansion
            @ ~/.julia/packages/ReTest/3Ikse/src/testset.jl:517 [inlined]
          [4] eval(m::Module, e::Any)
            @ Core ./boot.jl:489
          [5] (::ReTest.var"#110#111"{ReTest.Testset.Format})(mod::Module, ts::ReTest.TestsetExpr, pat::ReTest.And, chan::@NamedTuple{out::Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, compute::Channel{Nothing}, preview::Nothing})
            @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1154
          [6] #local_remotecall_thunk##0
            @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:425 [inlined]
          [7] run_work_thunk(thunk::Distributed.var"#local_remotecall_thunk##0#local_remotecall_thunk##1"{ReTest.var"#110#111"{ReTest.Testset.Format}, Tuple{Module, ReTest.TestsetExpr, ReTest.And, @NamedTuple{out::Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, compute::Channel{Nothing}, preview::Nothing}}, @Kwargs{}}, print_error::Bool)
            @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:70
          [8] remotecall_fetch(::Function, ::Distributed.LocalProcess, ::Module, ::Vararg{Any}; kwargs::@Kwargs{})
            @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:450
          [9] remotecall_fetch
            @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:449 [inlined]
         [10] remotecall_fetch
            @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:492 [inlined]
         [11] (::ReTest.var"#106#107"{Int64, ReTest.Testset.Format, Nothing, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
            @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151
        Stacktrace:
         [1] remotecall_fetch(::Function, ::Distributed.LocalProcess, ::Module, ::Vararg{Any}; kwargs::@Kwargs{})
           @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:451
         [2] remotecall_fetch
           @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:449 [inlined]
         [3] remotecall_fetch
           @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:492 [inlined]
         [4] (::ReTest.var"#106#107"{Int64, ReTest.Testset.Format, Nothing, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
           @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151
    Stacktrace:
     [1] sync_end(c::Channel{Any})
       @ Base ./task.jl:630
     [2] macro expansion
       @ ./task.jl:663 [inlined]
     [3] (::ReTest.var"#96#97"{Bool, ReTest.Testset.Format, Bool, Base.RefValue{Int64}, Bool, ReTest.var"#take_latest!#91", Nothing, ReentrantLock, Bool, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Base.RefValue{Exception}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
       @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1104
in expression starting at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/precompile.jl:19
in expression starting at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1
in expression starting at stdin:5

Precompilation completed after 30.99s


################################################################################
# Loading
#

Loading BiobakeryUtils...
WARNING: Imported binding Test.pop_testset was undeclared at import time during import to Testset.
WARNING: Imported binding Test.push_testset was undeclared at import time during import to Testset.
┌ Error: Precompilation failed, this is the captured stdout (114 chars):
└ @ ReTest ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:36
                                   Pass  |  Time / Compile / GC |   Alloc   ΔRSS |
ReTest._ReTestPrecompileTests:

┌ Error: And this is the captured stderr (0 chars):
└ @ ReTest ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:39

ERROR: LoadError: TaskFailedException
Stacktrace:
  [1] #wait#580
    @ ./task.jl:363 [inlined]
  [2] wait
    @ ./task.jl:360 [inlined]
  [3] retest(::Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}, ::Vararg{Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}}; dry::Bool, stats::Bool, shuffle::Bool, group::Bool, verbose::Bool, recursive::Bool, id::Nothing, strict::Bool, dup::Bool, static::Nothing, load::Bool, seed::Bool, marks::Bool, tag::Vector{Symbol}, spin::Bool, clear::Bool)
    @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1186
  [4] kwcall(::@NamedTuple{recursive::Bool, stats::Bool, spin::Bool}, ::typeof(InlineTest.retest), ::Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}, ::Vararg{Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}})
    @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:750
  [5] #137
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:26 [inlined]
  [6] redirect_stdio(f::ReTest.var"#137#138"; stdin::Nothing, stderr::Pipe, stdout::Pipe)
    @ Base ./stream.jl:1449
  [7] kwcall(::@NamedTuple{stderr::Pipe, stdout::Pipe}, ::typeof(redirect_stdio), f::Function)
    @ Base ./stream.jl:1412
  [8] macro expansion
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:25 [inlined]
  [9] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [10] macro expansion
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:23 [inlined]
 [11] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:121 [inlined]
 [12] top-level scope
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:118
 [13] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [14] top-level scope
    @ ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1751
 [15] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [16] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [17] top-level scope
    @ stdin:5
 [18] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [20] include_string
    @ ./loading.jl:3004 [inlined]
 [21] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [22] _start()
    @ Base ./client.jl:577

    nested task error: TaskFailedException
    
        nested task error: UndefVarError: `push_testset` not defined in `ReTest.Testset`
        Suggestion: this global was defined as `Test.push_testset` but not assigned a value.
        Stacktrace:
          [1] top-level scope
            @ ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:517
          [2] macro expansion
            @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:12 [inlined]
          [3] macro expansion
            @ ~/.julia/packages/ReTest/3Ikse/src/testset.jl:517 [inlined]
          [4] eval(m::Module, e::Any)
            @ Core ./boot.jl:489
          [5] (::ReTest.var"#110#111"{ReTest.Testset.Format})(mod::Module, ts::ReTest.TestsetExpr, pat::ReTest.And, chan::@NamedTuple{out::Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, compute::Channel{Nothing}, preview::Nothing})
            @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1154
          [6] #local_remotecall_thunk##0
            @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:425 [inlined]
          [7] run_work_thunk(thunk::Distributed.var"#local_remotecall_thunk##0#local_remotecall_thunk##1"{ReTest.var"#110#111"{ReTest.Testset.Format}, Tuple{Module, ReTest.TestsetExpr, ReTest.And, @NamedTuple{out::Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, compute::Channel{Nothing}, preview::Nothing}}, @Kwargs{}}, print_error::Bool)
            @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:70
          [8] remotecall_fetch(::Function, ::Distributed.LocalProcess, ::Module, ::Vararg{Any}; kwargs::@Kwargs{})
            @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:450
          [9] remotecall_fetch
            @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:449 [inlined]
         [10] remotecall_fetch
            @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:492 [inlined]
         [11] (::ReTest.var"#106#107"{Int64, ReTest.Testset.Format, Nothing, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
            @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151
        Stacktrace:
         [1] remotecall_fetch(::Function, ::Distributed.LocalProcess, ::Module, ::Vararg{Any}; kwargs::@Kwargs{})
           @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:451
         [2] remotecall_fetch
           @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:449 [inlined]
         [3] remotecall_fetch
           @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:492 [inlined]
         [4] (::ReTest.var"#106#107"{Int64, ReTest.Testset.Format, Nothing, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
           @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151
    Stacktrace:
     [1] sync_end(c::Channel{Any})
       @ Base ./task.jl:630
     [2] macro expansion
       @ ./task.jl:663 [inlined]
     [3] (::ReTest.var"#96#97"{Bool, ReTest.Testset.Format, Bool, Base.RefValue{Int64}, Bool, ReTest.var"#take_latest!#91", Nothing, ReentrantLock, Bool, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Base.RefValue{Exception}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
       @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1104
in expression starting at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/precompile.jl:19
in expression starting at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1
in expression starting at stdin:5
WARNING: Imported binding Test.pop_testset was undeclared at import time during import to Testset.
WARNING: Imported binding Test.push_testset was undeclared at import time during import to Testset.
┌ Error: Precompilation failed, this is the captured stdout (114 chars):
└ @ ReTest ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:36
                                   Pass  |  Time / Compile / GC |   Alloc   ΔRSS |
ReTest._ReTestPrecompileTests:

┌ Error: And this is the captured stderr (0 chars):
└ @ ReTest ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:39

ERROR: LoadError: TaskFailedException
Stacktrace:
  [1] #wait#580
    @ ./task.jl:363 [inlined]
  [2] wait
    @ ./task.jl:360 [inlined]
  [3] retest(::Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}, ::Vararg{Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}}; dry::Bool, stats::Bool, shuffle::Bool, group::Bool, verbose::Bool, recursive::Bool, id::Nothing, strict::Bool, dup::Bool, static::Nothing, load::Bool, seed::Bool, marks::Bool, tag::Vector{Symbol}, spin::Bool, clear::Bool)
    @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1186
  [4] kwcall(::@NamedTuple{recursive::Bool, stats::Bool, spin::Bool}, ::typeof(InlineTest.retest), ::Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}, ::Vararg{Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}})
    @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:750
  [5] #137
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:26 [inlined]
  [6] redirect_stdio(f::ReTest.var"#137#138"; stdin::Nothing, stderr::Pipe, stdout::Pipe)
    @ Base ./stream.jl:1449
  [7] kwcall(::@NamedTuple{stderr::Pipe, stdout::Pipe}, ::typeof(redirect_stdio), f::Function)
    @ Base ./stream.jl:1412
  [8] macro expansion
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:25 [inlined]
  [9] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [10] macro expansion
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:23 [inlined]
 [11] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:121 [inlined]
 [12] top-level scope
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:118
 [13] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [14] top-level scope
    @ ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1751
 [15] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [16] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [17] top-level scope
    @ stdin:5
 [18] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [20] include_string
    @ ./loading.jl:3004 [inlined]
 [21] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [22] _start()
    @ Base ./client.jl:577

    nested task error: TaskFailedException
    
        nested task error: UndefVarError: `push_testset` not defined in `ReTest.Testset`
        Suggestion: this global was defined as `Test.push_testset` but not assigned a value.
        Stacktrace:
          [1] top-level scope
            @ ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:517
          [2] macro expansion
            @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:12 [inlined]
          [3] macro expansion
            @ ~/.julia/packages/ReTest/3Ikse/src/testset.jl:517 [inlined]
          [4] eval(m::Module, e::Any)
            @ Core ./boot.jl:489
          [5] (::ReTest.var"#110#111"{ReTest.Testset.Format})(mod::Module, ts::ReTest.TestsetExpr, pat::ReTest.And, chan::@NamedTuple{out::Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, compute::Channel{Nothing}, preview::Nothing})
            @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1154
          [6] #local_remotecall_thunk##0
            @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:425 [inlined]
          [7] run_work_thunk(thunk::Distributed.var"#local_remotecall_thunk##0#local_remotecall_thunk##1"{ReTest.var"#110#111"{ReTest.Testset.Format}, Tuple{Module, ReTest.TestsetExpr, ReTest.And, @NamedTuple{out::Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, compute::Channel{Nothing}, preview::Nothing}}, @Kwargs{}}, print_error::Bool)
            @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:70
          [8] remotecall_fetch(::Function, ::Distributed.LocalProcess, ::Module, ::Vararg{Any}; kwargs::@Kwargs{})
            @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:450
          [9] remotecall_fetch
            @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:449 [inlined]
         [10] remotecall_fetch
            @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:492 [inlined]
         [11] (::ReTest.var"#106#107"{Int64, ReTest.Testset.Format, Nothing, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
            @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151
        Stacktrace:
         [1] remotecall_fetch(::Function, ::Distributed.LocalProcess, ::Module, ::Vararg{Any}; kwargs::@Kwargs{})
           @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:451
         [2] remotecall_fetch
           @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:449 [inlined]
         [3] remotecall_fetch
           @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:492 [inlined]
         [4] (::ReTest.var"#106#107"{Int64, ReTest.Testset.Format, Nothing, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
           @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151
    Stacktrace:
     [1] sync_end(c::Channel{Any})
       @ Base ./task.jl:630
     [2] macro expansion
       @ ./task.jl:663 [inlined]
     [3] (::ReTest.var"#96#97"{Bool, ReTest.Testset.Format, Bool, Base.RefValue{Int64}, Bool, ReTest.var"#take_latest!#91", Nothing, ReentrantLock, Bool, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Base.RefValue{Exception}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
       @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1104
in expression starting at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/precompile.jl:19
in expression starting at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1
in expression starting at stdin:5
WARNING: Imported binding Test.pop_testset was undeclared at import time during import to Testset.
WARNING: Imported binding Test.push_testset was undeclared at import time during import to Testset.
┌ Error: Precompilation failed, this is the captured stdout (114 chars):
└ @ ReTest ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:36
                                   Pass  |  Time / Compile / GC |   Alloc   ΔRSS |
ReTest._ReTestPrecompileTests:

┌ Error: And this is the captured stderr (0 chars):
└ @ ReTest ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:39

ERROR: LoadError: TaskFailedException
Stacktrace:
  [1] #wait#580
    @ ./task.jl:363 [inlined]
  [2] wait
    @ ./task.jl:360 [inlined]
  [3] retest(::Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}, ::Vararg{Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}}; dry::Bool, stats::Bool, shuffle::Bool, group::Bool, verbose::Bool, recursive::Bool, id::Nothing, strict::Bool, dup::Bool, static::Nothing, load::Bool, seed::Bool, marks::Bool, tag::Vector{Symbol}, spin::Bool, clear::Bool)
    @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1186
  [4] kwcall(::@NamedTuple{recursive::Bool, stats::Bool, spin::Bool}, ::typeof(InlineTest.retest), ::Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}, ::Vararg{Union{Regex, AbstractString, Integer, Module, Symbol, Tuple, ReTest.Pattern, AbstractArray, Pair{Module, <:Union{Regex, AbstractString, Integer, Symbol, Tuple, ReTest.Pattern, AbstractArray}}}})
    @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:750
  [5] #137
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:26 [inlined]
  [6] redirect_stdio(f::ReTest.var"#137#138"; stdin::Nothing, stderr::Pipe, stdout::Pipe)
    @ Base ./stream.jl:1449
  [7] kwcall(::@NamedTuple{stderr::Pipe, stdout::Pipe}, ::typeof(redirect_stdio), f::Function)
    @ Base ./stream.jl:1412
  [8] macro expansion
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:25 [inlined]
  [9] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [10] macro expansion
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:23 [inlined]
 [11] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:121 [inlined]
 [12] top-level scope
    @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:118
 [13] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [14] top-level scope
    @ ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1751
 [15] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [16] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [17] top-level scope
    @ stdin:5
 [18] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [20] include_string
    @ ./loading.jl:3004 [inlined]
 [21] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [22] _start()
    @ Base ./client.jl:577

    nested task error: TaskFailedException
    
        nested task error: UndefVarError: `push_testset` not defined in `ReTest.Testset`
        Suggestion: this global was defined as `Test.push_testset` but not assigned a value.
        Stacktrace:
          [1] top-level scope
            @ ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:517
          [2] macro expansion
            @ ~/.julia/packages/ReTest/3Ikse/src/precompile.jl:12 [inlined]
          [3] macro expansion
            @ ~/.julia/packages/ReTest/3Ikse/src/testset.jl:517 [inlined]
          [4] eval(m::Module, e::Any)
            @ Core ./boot.jl:489
          [5] (::ReTest.var"#110#111"{ReTest.Testset.Format})(mod::Module, ts::ReTest.TestsetExpr, pat::ReTest.And, chan::@NamedTuple{out::Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, compute::Channel{Nothing}, preview::Nothing})
            @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1154
          [6] #local_remotecall_thunk##0
            @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:425 [inlined]
          [7] run_work_thunk(thunk::Distributed.var"#local_remotecall_thunk##0#local_remotecall_thunk##1"{ReTest.var"#110#111"{ReTest.Testset.Format}, Tuple{Module, ReTest.TestsetExpr, ReTest.And, @NamedTuple{out::Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, compute::Channel{Nothing}, preview::Nothing}}, @Kwargs{}}, print_error::Bool)
            @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/process_messages.jl:70
          [8] remotecall_fetch(::Function, ::Distributed.LocalProcess, ::Module, ::Vararg{Any}; kwargs::@Kwargs{})
            @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:450
          [9] remotecall_fetch
            @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:449 [inlined]
         [10] remotecall_fetch
            @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:492 [inlined]
         [11] (::ReTest.var"#106#107"{Int64, ReTest.Testset.Format, Nothing, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
            @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151
        Stacktrace:
         [1] remotecall_fetch(::Function, ::Distributed.LocalProcess, ::Module, ::Vararg{Any}; kwargs::@Kwargs{})
           @ Distributed /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:451
         [2] remotecall_fetch
           @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:449 [inlined]
         [3] remotecall_fetch
           @ /opt/julia/share/julia/stdlib/v1.14/Distributed/src/remotecall.jl:492 [inlined]
         [4] (::ReTest.var"#106#107"{Int64, ReTest.Testset.Format, Nothing, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
           @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1151
    Stacktrace:
     [1] sync_end(c::Channel{Any})
       @ Base ./task.jl:630
     [2] macro expansion
       @ ./task.jl:663 [inlined]
     [3] (::ReTest.var"#96#97"{Bool, ReTest.Testset.Format, Bool, Base.RefValue{Int64}, Bool, ReTest.var"#take_latest!#91", Nothing, ReentrantLock, Bool, ReTest.Testset.ReTestSet, Base.Threads.Atomic{Bool}, Base.RefValue{Exception}, Channel{Nothing}, Distributed.RemoteChannel{Channel{Union{Nothing, ReTest.Testset.ReTestSet}}}, Vector{Any}, ReTest.And, Module})()
       @ ReTest ~/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1104
in expression starting at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/precompile.jl:19
in expression starting at /home/pkgeval/.julia/packages/ReTest/3Ikse/src/ReTest.jl:1
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ ReTest
│  [Output was shown above]
└  
ERROR: LoadError: The following 1 package failed to precompile:

ReTest 
Failed to precompile ReTest [e0db7c4e-2690-44b9-bad6-7687da720f89] to "/home/pkgeval/.julia/compiled/v1.14/ReTest/jl_Df8Naf" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/Microbiome/StzgY/src/Microbiome.jl:1
in expression starting at /home/pkgeval/.julia/packages/BiobakeryUtils/ypFMk/src/BiobakeryUtils.jl:1

Loading failed after 74.66s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using BiobakeryUtils'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:611 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:526
 [3] run(::Cmd)
   @ Base ./process.jl:523
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [7] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 145.05s: package fails to precompile