Package evaluation to load ADCMEKit on Julia 1.14.0-DEV.87 (8bcaa34afa*) started at 2025-11-15T12:44:16.226


################################################################################
# Set-up
#


Set-up completed after 0.12s


################################################################################
# Installation
#

Installing ADCMEKit...
   Resolving package versions...
   Installed Conda ──── v1.10.3
   Installed CMake ──── v1.2.0
   Installed HDF5 ───── v0.13.6
   Installed PyCall ─── v1.96.4
   Installed ADCMEKit ─ v0.2.3
   Installed ADCME ──── v0.5.13
    Updating `~/.julia/environments/v1.14/Project.toml`
  [b6719975] + ADCMEKit v0.2.3
    Updating `~/.julia/environments/v1.14/Manifest.toml`
⌅ [07b341a0] + ADCME v0.5.13
  [b6719975] + ADCMEKit v0.2.3
  [621f4979] + AbstractFFTs v1.5.0
  [9e28174c] + BinDeps v1.0.2
  [a74b3585] + Blosc v0.7.3
  [e1450e63] + BufferedStreams v1.2.2
  [631607c0] + CMake v1.2.0
  [944b1d66] + CodecZlib v0.7.8
  [3da002f7] + ColorTypes v0.12.1
  [5ae59095] + Colors v0.13.1
  [8f4d0f93] + Conda v1.10.3
  [7a1cc6ca] + FFTW v1.10.0
  [53c48c17] + FixedPointNumbers v0.8.5
⌅ [f67ccb44] + HDF5 v0.13.6
  [692b3bcd] + JLLWrappers v1.7.1
  [682c06a0] + JSON v1.3.0
  [b964fa9f] + LaTeXStrings v1.4.0
⌅ [23992714] + MAT v0.8.1
  [3da0fdf6] + MPIPreferences v0.1.11
  [1914dd2f] + MacroTools v0.5.16
  [69de0a69] + Parsers v2.8.3
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [438e738f] + PyCall v1.96.4
  [d330b81b] + PyPlot v2.11.6
  [189a3867] + Reexport v1.2.2
⌅ [276daf66] + SpecialFunctions v0.10.3
  [10745b16] + Statistics v1.11.1
  [ec057cc2] + StructUtils v2.6.0
  [3bb67fe8] + TranscodingStreams v0.11.3
  [30578b45] + URIParser v0.4.1
  [81def892] + VersionParsing v1.3.0
  [0b7ba130] + Blosc_jll v1.21.7+0
  [f5851436] + FFTW_jll v3.3.11+0
  [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.2+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [5ced341a] + Lz4_jll v1.10.1+0
  [856f044c] + MKL_jll v2025.2.0+0
  [7cb0a576] + MPICH_jll v4.3.2+0
  [f1f71cc9] + MPItrampoline_jll v5.5.4+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] + OpenMPI_jll v5.0.8+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
⌅ [02c8fc9c] + XML2_jll v2.13.9+0
  [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0
  [477f73a3] + libaec_jll v1.1.4+0
  [1317d2d5] + oneTBB_jll v2022.0.0+1
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.16.0+0
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.11.4
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.68.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
    Building Conda ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log`
    Building PyCall ──→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log`
    Building CMake ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/50a8b41d2c562fccd9ab841085fc7d1e2706da82/build.log`
    Building HDF5 ────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0713cbabdf855852dfab3ce6447c87145f3d9ea8/build.log`
    Building ADCME ───→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/aec60a2a458732aa0bd3e518b3f5a0d741b4c9ad/build.log`
    Building ADCMEKit → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/e61342ce0edf8177479315b8a861c6927593c647/build.log`

Installation completed after 1405.74s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
   3761.6 ms  ✓ SpecialFunctions
  24123.4 ms  ✓ PyCall
WARNING: Constructor for type "Array" was extended in `HDF5` without explicit qualification or import.
  NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Array end`.
  Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`.
  11066.8 ms  ✓ HDF5
   9903.2 ms  ✓ PyPlot
   7965.8 ms  ✓ MAT
WARNING: method definition for #newton_raphson#39 at /home/pkgeval/.julia/packages/ADCME/JzSON/src/optim.jl:411 declares type variable T but does not use it.
WARNING: method definition for #newton_raphson_with_grad#49 at /home/pkgeval/.julia/packages/ADCME/JzSON/src/optim.jl:565 declares type variable T but does not use it.
WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/JzSON/src/optim.jl:639 declares type variable T but does not use it.
WARNING: Method definition size(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/PyCall.jl:820 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/JzSON/src/variable.jl:212.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
  12863.9 ms  ? ADCME
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("07b341a0-ce75-57c6-b2de-414ffdc00be5"), "ADCME") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2717
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2576
  [4] macro expansion
    @ ./loading.jl:2504 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [7] require
    @ ./loading.jl:2444 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/ADCMEKit/Iikxe/src/ADCMEKit.jl:7
 [13] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [18] include_string
    @ ./loading.jl:3004 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [20] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/ADCMEKit/Iikxe/src/ADCMEKit.jl:1
in expression starting at stdin:5

  2 dependencies had output during precompilation:
┌ ADCME
│  WARNING: method definition for #newton_raphson#39 at /home/pkgeval/.julia/packages/ADCME/JzSON/src/optim.jl:411 declares type variable T but does not use it.
│  WARNING: method definition for #newton_raphson_with_grad#49 at /home/pkgeval/.julia/packages/ADCME/JzSON/src/optim.jl:565 declares type variable T but does not use it.
│  WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/JzSON/src/optim.jl:639 declares type variable T but does not use it.
│  WARNING: Method definition size(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/PyCall.jl:820 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/JzSON/src/variable.jl:212.
│  ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
└  
┌ HDF5
│  WARNING: Constructor for type "Array" was extended in `HDF5` without explicit qualification or import.
│    NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function Array end`.
│    Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`.
└  

Precompilation completed after 88.77s


################################################################################
# Loading
#

Loading ADCMEKit...
WARNING: method definition for #newton_raphson#39 at /home/pkgeval/.julia/packages/ADCME/JzSON/src/optim.jl:411 declares type variable T but does not use it.
WARNING: method definition for #newton_raphson_with_grad#49 at /home/pkgeval/.julia/packages/ADCME/JzSON/src/optim.jl:565 declares type variable T but does not use it.
WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/JzSON/src/optim.jl:639 declares type variable T but does not use it.
WARNING: Method definition size(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/PyCall.jl:820 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/JzSON/src/variable.jl:212.
ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("07b341a0-ce75-57c6-b2de-414ffdc00be5"), "ADCME") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2717
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2576
  [4] macro expansion
    @ ./loading.jl:2504 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2468
  [7] require
    @ ./loading.jl:2444 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/ADCMEKit/Iikxe/src/ADCMEKit.jl:7
 [13] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3148
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2994
 [18] include_string
    @ ./loading.jl:3004 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [20] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/ADCMEKit/Iikxe/src/ADCMEKit.jl:1
in expression starting at stdin:5

  2 dependencies had output during precompilation:
┌ ADCME
│  WARNING: method definition for #newton_raphson#39 at /home/pkgeval/.julia/packages/ADCME/JzSON/src/optim.jl:411 declares type variable T but does not use it.
│  WARNING: method definition for #newton_raphson_with_grad#49 at /home/pkgeval/.julia/packages/ADCME/JzSON/src/optim.jl:565 declares type variable T but does not use it.
│  WARNING: method definition for NonlinearConstrainedProblem at /home/pkgeval/.julia/packages/ADCME/JzSON/src/optim.jl:639 declares type variable T but does not use it.
│  WARNING: Method definition size(PyCall.PyObject) in module PyCall at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/PyCall.jl:820 overwritten in module ADCME at /home/pkgeval/.julia/packages/ADCME/JzSON/src/variable.jl:212.
│  ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation.
└  
┌ ADCMEKit
│  [Output was shown above]
└  
ERROR: The following 1 package failed to precompile:

ADCMEKit 
Failed to precompile ADCMEKit [b6719975-6fcd-4453-92fa-4206f52c3839] to "/home/pkgeval/.julia/compiled/v1.14/ADCMEKit/jl_1q4Ky5" (ProcessExited(1)).


Loading failed after 24.57s

ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using ADCMEKit'`, ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:611 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:526
 [3] run(::Cmd)
   @ Base ./process.jl:523
 [4] top-level scope
   @ /PkgEval.jl/scripts/evaluate.jl:193
 [5] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [6] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [7] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:184

PkgEval failed after 1638.35s: illegal method overwrites during precompilation