Package evaluation to test AAindex on Julia 1.14.0-DEV.87 (8bcaa34afa*) started at 2025-11-15T12:09:51.537 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.59s ################################################################################ # Installation # Installing AAindex... Resolving package versions... Installed FilePathsBase ─────────────── v0.9.24 Installed CodecZlib ─────────────────── v0.7.8 Installed ConcurrentUtilities ───────── v2.5.0 Installed URIs ──────────────────────── v1.6.1 Installed InlineStrings ─────────────── v1.4.5 Installed DataDeps ──────────────────── v0.7.13 Installed DataStructures ────────────── v0.19.3 Installed ExceptionUnwrapping ───────── v0.1.11 Installed OrderedCollections ────────── v1.8.1 Installed Compat ────────────────────── v4.18.1 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed Statistics ────────────────── v1.11.1 Installed TranscodingStreams ────────── v0.11.3 Installed DataValueInterfaces ───────── v1.0.0 Installed InvertedIndices ───────────── v1.3.1 Installed SentinelArrays ────────────── v1.4.8 Installed MbedTLS ───────────────────── v1.1.9 Installed OpenSSL ───────────────────── v1.6.0 Installed PrecompileTools ───────────── v1.3.3 Installed Twiddle ───────────────────── v1.1.2 Installed LoggingExtras ─────────────── v1.2.0 Installed StaticArraysCore ──────────── v1.4.4 Installed StringManipulation ────────── v0.4.1 Installed StaticArrays ──────────────── v1.9.15 Installed BioSymbols ────────────────── v5.2.0 Installed HTTP ──────────────────────── v1.10.19 Installed BitFlags ──────────────────── v0.1.9 Installed Parsers ───────────────────── v2.8.3 Installed Tables ────────────────────── v1.12.1 Installed Scratch ───────────────────── v1.3.0 Installed Reexport ──────────────────── v1.2.2 Installed SimpleBufferStream ────────── v1.2.0 Installed PrettyTables ──────────────── v3.1.0 Installed Preferences ───────────────── v1.5.0 Installed Missings ──────────────────── v1.2.0 Installed WeakRefStrings ────────────── v1.4.2 Installed PooledArrays ──────────────── v1.4.3 Installed DataFrames ────────────────── v1.8.1 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed MbedTLS_jll ───────────────── v2.28.10+0 Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed AAindex ───────────────────── v0.3.0 Installed WorkerUtilities ───────────── v1.6.1 Installed CSV ───────────────────────── v0.10.15 Installed BioSequences ──────────────── v3.5.0 Installing 1 artifacts Installed artifact MbedTLS 2.2 MiB Updating `~/.julia/environments/v1.14/Project.toml` [1cd36ffe] + AAindex v0.3.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [1cd36ffe] + AAindex v0.3.0 [7e6ae17a] + BioSequences v3.5.0 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [124859b0] + DataDeps v0.7.13 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [cd3eb016] + HTTP v1.10.19 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 [e6f89c97] + LoggingExtras v1.2.0 [739be429] + MbedTLS v1.1.9 [e1d29d7a] + Missings v1.2.0 [4d8831e6] + OpenSSL v1.6.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [189a3867] + Reexport v1.2.2 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [5c2747f8] + URIs v1.6.1 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [c8ffd9c3] + MbedTLS_jll v2.28.10+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [3f19e933] + p7zip_jll v17.7.0+0 Installation completed after 9.66s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4564.1 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 1705.6 ms ✓ InlineStrings 832.9 ms ✓ Reexport 1160.9 ms ✓ Statistics 967.5 ms ✓ DataAPI 821.7 ms ✓ DataValueInterfaces 1005.7 ms ✓ StaticArraysCore 1268.4 ms ✓ URIs 1338.8 ms ✓ OrderedCollections 914.9 ms ✓ InvertedIndices 856.7 ms ✓ Twiddle 893.5 ms ✓ BitFlags 1849.6 ms ✓ ConcurrentUtilities 1047.4 ms ✓ WorkerUtilities 1338.0 ms ✓ TranscodingStreams 838.6 ms ✓ SimpleBufferStream 798.6 ms ✓ IteratorInterfaceExtensions 878.7 ms ✓ LaTeXStrings 1953.6 ms ✓ Crayons 2819.5 ms ✓ SentinelArrays 932.2 ms ✓ Scratch 1081.4 ms ✓ LoggingExtras 1160.9 ms ✓ Compat 1158.6 ms ✓ Preferences 1616.7 ms ✓ ExceptionUnwrapping 1377.1 ms ✓ Missings 1044.7 ms ✓ PooledArrays 4413.1 ms ✓ DataStructures 4259.1 ms ✓ OpenSSL 1018.0 ms ✓ CodecZlib 747.4 ms ✓ TableTraits 894.9 ms ✓ Compat → CompatLinearAlgebraExt 1238.0 ms ✓ JLLWrappers 1431.6 ms ✓ PrecompileTools 1276.6 ms ✓ SortingAlgorithms 1922.8 ms ✓ Tables 2066.7 ms ✓ FilePathsBase 1355.2 ms ✓ MbedTLS_jll 2537.3 ms ✓ BioSymbols 13543.5 ms ✓ StaticArrays 3032.2 ms ✓ StringManipulation 16354.5 ms ✓ Parsers 2759.5 ms ✓ FilePathsBase → FilePathsBaseTestExt 974.2 ms ✓ FilePathsBase → FilePathsBaseMmapExt 2086.3 ms ✓ MbedTLS 10158.7 ms ✓ BioSequences 1435.8 ms ✓ StaticArrays → StaticArraysStatisticsExt 41117.8 ms ✓ PrettyTables 943.4 ms ✓ InlineStrings → ParsersExt 27479.3 ms ✓ HTTP 93507.9 ms ✓ DataFrames 2573.7 ms ✓ WeakRefStrings 6032.7 ms ✓ DataDeps 30693.3 ms ✓ CSV 13808.1 ms ✓ AAindex 54 dependencies successfully precompiled in 321 seconds. 21 already precompiled. Precompilation completed after 333.97s ################################################################################ # Testing # Testing AAindex Status `/tmp/jl_qrKOo2/Project.toml` [1cd36ffe] AAindex v0.3.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_qrKOo2/Manifest.toml` [1cd36ffe] AAindex v0.3.0 [7e6ae17a] BioSequences v3.5.0 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [cd3eb016] HTTP v1.10.19 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [b964fa9f] LaTeXStrings v1.4.0 [e6f89c97] LoggingExtras v1.2.0 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [4d8831e6] OpenSSL v1.6.0 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.0 [189a3867] Reexport v1.2.2 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [5c2747f8] URIs v1.6.1 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [c8ffd9c3] MbedTLS_jll v2.28.10+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [3f19e933] p7zip_jll v17.7.0+0 Testing Running tests... [ Info: Testing index [ Info: Testing parse [ Info: Testing data [ Info: Testing search Test Summary: | Pass Total Time AAindex | 26 26 15.8s Testing AAindex tests passed Testing completed after 155.68s PkgEval succeeded after 530.74s