Package evaluation to test PlantSimEngine on Julia 1.12.7-DEV.45 (88b38b4bc0*) started at 2026-06-24T16:01:44.490 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.27s ################################################################################ # Installation # Installing PlantSimEngine... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [9a576370] + PlantSimEngine v0.14.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.44 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [198e06fe] + BangBang v0.4.9 [9718e550] + Baselet v0.1.1 [d1d4a3ce] + BitFlags v0.1.10 [336ed68f] + CSV v0.10.16 [da1fd8a2] + CodeTracking v3.0.2 [6309b1aa] + CodecInflate64 v0.1.3 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.1 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.2 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [48062228] + FilePathsBase v0.9.24 ⌅ [53c48c17] + FixedPointNumbers v0.8.6 [86223c79] + Graphs v1.14.0 ⌅ [cd3eb016] + HTTP v1.11.0 ⌅ [eafb193a] + Highlights v0.5.3 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.5 [0c81fc1b] + InputBuffers v1.1.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [682c06a0] + JSON v1.6.1 [b14d175d] + JuliaVariables v0.2.4 [b964fa9f] + LaTeXStrings v1.4.0 [e6f89c97] + LoggingExtras v1.2.0 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.10 [fa8bd995] + MetaGraphsNext v0.8.0 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [dd4a991b] + MultiScaleTreeGraph v0.15.4 [af6c499f] + MutableNamedTuples v0.1.3 [1c23619d] + MyterialColors v0.3.0 [71a1bf82] + NameResolution v0.1.5 [4d8831e6] + OpenSSL v1.6.1 ⌅ [bac558e1] + OrderedCollections v1.8.2 ⌅ [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.6 [4630fe09] + PlantMeteo v0.8.4 [9a576370] + PlantSimEngine v0.14.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v3.3.2 [33c8b6b6] + ProgressLogging v0.1.6 [189a3867] + Reexport v1.2.2 [91c51154] + SentinelArrays v1.4.10 [efcf1570] + Setfield v1.1.2 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.6 [a2af1166] + SortingAlgorithms v1.2.3 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.4 [ec057cc2] + StructUtils v2.8.2 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [22787eb5] + Term v2.0.8 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.85 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [ea10d353] + WeakRefStrings v1.4.3 [76eceee3] + WorkerUtilities v1.6.1 [fdbf4ff8] + XLSX v0.11.11 [72c71f33] + XML v0.3.9 [ddb6d928] + YAML v0.4.16 [49080126] + ZipArchives v2.6.0 [94ce4f54] + Libiconv_jll v1.18.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.25s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 2296.4 ms ✓ InitialValues 875.0 ms ✓ MyterialColors 917.0 ms ✓ PrettyPrint 955.4 ms ✓ DefineSingletons 32928.1 ms ✓ MLStyle 753.7 ms ✓ MutableNamedTuples 2455.5 ms ✓ Baselet 4341.9 ms ✓ XML 1052.7 ms ✓ ProgressLogging 12255.7 ms ✓ Highlights 987.8 ms ✓ ContextVariablesX 3292.3 ms ✓ UnicodeFun 3688.2 ms ✓ SplittablesBase 1250.1 ms ✓ TableOperations 1054.4 ms ✓ StringEncodings 6928.5 ms ✓ ArnoldiMethod 15150.8 ms ✓ BangBang 842.9 ms ✓ NameResolution 84483.5 ms ✓ XLSX 1013.5 ms ✓ FLoopsBase 99594.6 ms ✓ Term 5518.3 ms ✓ YAML 15455.2 ms ✓ Graphs 1682.8 ms ✓ BangBang → BangBangStaticArraysExt 7192.9 ms ✓ BangBang → BangBangDataFramesExt 1257.6 ms ✓ BangBang → BangBangTablesExt 2458.7 ms ✓ MicroCollections 12545.5 ms ✓ JuliaVariables 3773.3 ms ✓ XLSX → StyledStringsSstsExt 270133.5 ms ✓ PlantMeteo 5743.6 ms ✓ MetaGraphsNext 14297.0 ms ✓ Transducers 137309.1 ms ✓ MultiScaleTreeGraph 107381.1 ms ✓ Transducers → TransducersDataFramesExt 17180.9 ms ✓ FLoops 259213.3 ms ✓ PlantSimEngine 22002.5 ms ✓ PlantSimEngine → PlantSimEngineGraphEditorExt 37 dependencies successfully precompiled in 1161 seconds. 135 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 84 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 1177.05s ################################################################################ # Testing # Testing PlantSimEngine Status `/tmp/jl_EOVYyO/Project.toml` [4c88cf16] Aqua v0.8.16 [6e4b80f9] BenchmarkTools v1.8.0 [336ed68f] CSV v0.10.16 [a93c6f00] DataFrames v1.8.2 [e30172f5] Documenter v1.17.0 ⌅ [cd3eb016] HTTP v1.11.0 [dd4a991b] MultiScaleTreeGraph v0.15.4 [4630fe09] PlantMeteo v0.8.4 [9a576370] PlantSimEngine v0.14.1 [10745b16] Statistics v1.11.1 [bd369af6] Tables v1.12.1 [ade2ca70] Dates v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_EOVYyO/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.44 [4c88cf16] Aqua v0.8.16 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [198e06fe] BangBang v0.4.9 [9718e550] Baselet v0.1.1 [6e4b80f9] BenchmarkTools v1.8.0 [d1d4a3ce] BitFlags v0.1.10 [336ed68f] CSV v0.10.16 [da1fd8a2] CodeTracking v3.0.2 [6309b1aa] CodecInflate64 v0.1.3 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.1 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.17.0 [460bff9d] ExceptionUnwrapping v0.1.11 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [48062228] FilePathsBase v0.9.24 ⌅ [53c48c17] FixedPointNumbers v0.8.6 [d7ba0133] Git v1.5.0 [86223c79] Graphs v1.14.0 ⌅ [cd3eb016] HTTP v1.11.0 ⌅ [eafb193a] Highlights v0.5.3 [b5f81e59] IOCapture v1.0.0 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.5 [0c81fc1b] InputBuffers v1.1.1 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [682c06a0] JSON v1.6.1 [b14d175d] JuliaVariables v0.2.4 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [e6f89c97] LoggingExtras v1.2.0 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.3 [739be429] MbedTLS v1.1.10 [fa8bd995] MetaGraphsNext v0.8.0 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [dd4a991b] MultiScaleTreeGraph v0.15.4 [af6c499f] MutableNamedTuples v0.1.3 [1c23619d] MyterialColors v0.3.0 [71a1bf82] NameResolution v0.1.5 [4d8831e6] OpenSSL v1.6.1 ⌅ [bac558e1] OrderedCollections v1.8.2 ⌅ [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.6 [4630fe09] PlantMeteo v0.8.4 [9a576370] PlantSimEngine v0.14.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v3.3.2 [33c8b6b6] ProgressLogging v0.1.6 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [91c51154] SentinelArrays v1.4.10 [efcf1570] Setfield v1.1.2 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.6 [a2af1166] SortingAlgorithms v1.2.3 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.4 [ec057cc2] StructUtils v2.8.2 [ab02a1b2] TableOperations v1.2.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [22787eb5] Term v2.0.8 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.85 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [1cfade01] UnicodeFun v0.4.1 [ea10d353] WeakRefStrings v1.4.3 [76eceee3] WorkerUtilities v1.6.1 [fdbf4ff8] XLSX v0.11.11 [72c71f33] XML v0.3.9 [ddb6d928] YAML v0.4.16 [49080126] ZipArchives v2.6.0 [2e619515] Expat_jll v2.8.1+0 [020c3dae] Git_LFS_jll v3.7.1+0 [f8c6e375] Git_jll v2.54.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [9bd350c2] OpenSSH_jll v10.3.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.6+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 4352.1 ms ✓ Expat_jll 1198.0 ms ✓ OpenSSH_jll 1153.2 ms ✓ Git_LFS_jll 1148.8 ms ✓ Git_jll 762.2 ms ✓ Git 43137.3 ms ✓ Documenter 6 dependencies successfully precompiled in 52 seconds. 48 already precompiled. 41 dependencies precompiled but different versions are currently loaded (AbstractTrees, ArgTools, Base64, CodecZlib, Dates, DocStringExtensions, Downloads, InteractiveUtils, JLLWrappers, JSON, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Libiconv_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Parsers, Pkg, Pkg → REPLExt, PrecompileTools, Preferences, Printf, REPL, Serialization, StructUtils, StyledStrings, TOML, Tar, Test, TranscodingStreams, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 9 dependents of these packages may trigger further precompilation to work with the unexpected versions. [ Info: Some variables must be initialized before simulation: (process1 = (:var1, :var2), process2 = (:var1,)) (see `to_initialize()`) [ Info: Some variables must be initialized before simulation: (process1 = (:var1, :var2), process2 = (:var1,)) (see `to_initialize()`) [ Info: Model Process3Model from process process3 needs a model that is a subtype of Process2Model in process process2, but the process is not parameterized in the ModelList. ┌ Warning: No model runs at the meteo base timestep (3600.0 s). Resolved model timesteps: Leaf/mrmeteodailyconsumer=7200.0s (ModelSpec). └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/time/runtime/clocks.jl:387 ┌ Warning: `run!(mtg, mapping::AbstractDict, ...)` is deprecated. Use `run!(mtg, ModelMapping(mapping), ...)` or construct `ModelMapping(...)` directly. │ caller = kwcall(::@NamedTuple{executor::SequentialEx{@NamedTuple{}}, tracked_outputs::Vector{OutputRequest{Nothing, HoldLast, Nothing}}, return_requested_outputs::Bool}, ::typeof(run!), object::Node{NodeMTG, MultiScaleTreeGraph.ColumnarAttrs}, mapping::Dict{Symbol, Tuple{ModelSpec{MRExportSourceModel, Nothing, Float64, @NamedTuple{}, @NamedTuple{}, Nothing, @NamedTuple{}, Symbol}}}, meteo::TimeStepTable{Atmosphere{(:date, :duration, :T, :Wind, :P, :Rh, :Precipitations, :Cₐ, :e, :eₛ, :VPD, :ρ, :λ, :γ, :ε, :Δ, :clearness, :Ri_SW_f, :Ri_PAR_f, :Ri_NIR_f, :Ri_TIR_f, :Ri_custom_f), Tuple{DateTime, Second, Vararg{Float64, 20}}}}) at run.jl:608 └ @ Core ~/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:608 [ Info: Model Process3Model from process process3 needs a model that is a subtype of Process2Model in process process2, but the process is not parameterized in the ModelList. ┌ Warning: String scale names are deprecated and will be removed in a future release. Use Symbol scales, e.g. `:Leaf` instead of `"Leaf"`. │ caller = top-level scope at test-simulation.jl:27 └ @ Core ~/.julia/packages/PlantSimEngine/YgR8Q/test/test-simulation.jl:27 ┌ Warning: `run!` with a collection of `ModelList` is deprecated. Use a collection of `ModelMapping` objects instead. │ caller = #run!#319 at run.jl:193 [inlined] └ @ Core ~/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:193 ┌ Warning: Parallelisation over objects was removed, (but may be reintroduced in the future). Parallelisation will only occur over timesteps. └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:461 ┌ Warning: `run!` with a collection of `ModelList` is deprecated. Use a collection of `ModelMapping` objects instead. │ caller = #run!#319 at run.jl:193 [inlined] └ @ Core ~/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:193 ┌ Warning: `run!` with a collection of `ModelList` is deprecated. Use a collection of `ModelMapping` objects instead. │ caller = #run!#319 at run.jl:193 [inlined] └ @ Core ~/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:193 ┌ Warning: Parallelisation over objects was removed, (but may be reintroduced in the future). Parallelisation will only occur over timesteps. └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:262 ┌ Warning: `run!` with a collection of `ModelList` is deprecated. Use a collection of `ModelMapping` objects instead. │ caller = #run!#319 at run.jl:193 [inlined] └ @ Core ~/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:193 Issue in function #233 for node #3. ┌ Warning: A parallel executor was provided (`executor=ThreadedEx()`) but some models cannot be run in parallel: ToyRUEGrowthModel{Float64}(0.3). The simulation will be run sequentially. Use `executor=SequentialEx()` to remove this warning. └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:376 [ Info: Listening on: 127.0.0.1:41001, thread id: 1 Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. [ Info: Server on 127.0.0.1:41001 closing [ Info: Listening on: 127.0.0.1:41853, thread id: 1 Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. [ Info: Server on 127.0.0.1:41853 closing [ Info: Listening on: 127.0.0.1:42117, thread id: 1 Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. Warning: detected a stack overflow; program state may be corrupted, so further execution might be unreliable. [ Info: Server on 127.0.0.1:42117 closing Issue in function #233 for node #4. ┌ Warning: Promoting `carbon_biomass` value taken from MTG node 4 (Internode) from Float64 to Float32: 1.0 (Float32) └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:130 ┌ Warning: Promoting `carbon_biomass` value taken from MTG node 5 (Leaf) from Float64 to Float32: 1.0 (Float32) └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:130 ┌ Warning: Promoting `carbon_biomass` value taken from MTG node 6 (Internode) from Float64 to Float32: 1.0 (Float32) └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:130 ┌ Warning: Promoting `carbon_biomass` value taken from MTG node 7 (Leaf) from Float64 to Float32: 1.0 (Float32) └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:130 ┌ Warning: Promoting `carbon_biomass` value taken from MTG node 4 (Internode) from Float64 to Float32: 1.0 (Float32) └ @ PlantSimEngine ~/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/initialisation.jl:130 Issue in function #233 for node #3. Issue in function #233 for node #5. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 335 running 1 of 1 signal (10): User defined signal 1 egal_types at /source/src/builtins.c:180 ijl_types_equal at /source/src/subtype.c:2357 jl_specializations_get_linfo_ at /source/src/gf.c:237 cache_method at /source/src/gf.c:1587 ml_matches at /source/src/gf.c:4916 ml_matches at /source/src/gf.c:4608 [inlined] ijl_matching_methods at /source/src/gf.c:3126 [inlined] ijl_matching_methods at /source/src/gf.c:3113 _methods_by_ftype at ./runtime_internals.jl:1415 [inlined] _findall at ./../usr/share/julia/Compiler/src/methodtable.jl:105 [inlined] #findall#5 at ./../usr/share/julia/Compiler/src/methodtable.jl:70 [inlined] findall at ./../usr/share/julia/Compiler/src/methodtable.jl:70 [inlined] #findall#13 at ./../usr/share/julia/Compiler/src/methodtable.jl:113 findall at ./../usr/share/julia/Compiler/src/methodtable.jl:110 [inlined] find_simple_method_matches at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:386 jfptr_find_simple_method_matches_5234.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 tojlinvoke86046.1 at /opt/julia/lib/julia/sys.so (unknown line) j_find_simple_method_matches_79178.1 at /opt/julia/lib/julia/sys.so (unknown line) #find_method_matches#135 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:348 [inlined] find_method_matches at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:342 [inlined] abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:120 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2822 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2931 infercalls at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1870 jfptr_infercalls_79099.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 abstract_apply at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1890 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2688 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2931 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2924 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3084 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3102 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3431 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3877 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3834 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4388 jfptr_typeinf_local_80368.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4581 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1256 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1439 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1448 jfptr_typeinf_ext_toplevel_83288.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] jl_type_infer at /source/src/gf.c:466 jl_compile_method_internal at /source/src/gf.c:3516 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 soft_dependencies_multiscale at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/dependencies/soft_dependencies.jl:151 unknown function (ip: 0x76759f119632) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #dep#172 at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/dependencies/dependencies.jl:116 dep at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/dependencies/dependencies.jl:103 [inlined] #dep#59 at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/mapping.jl:434 [inlined] dep at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/mtg/mapping/mapping.jl:434 unknown function (ip: 0x76759ad97be7) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:929 [inlined] macro expansion at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/test/test-mtg-multiscale-cyclic-dep.jl:224 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] top-level scope at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/test/test-mtg-multiscale-cyclic-dep.jl:126 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 jl_toplevel_eval_flex at /source/src/toplevel.c:1024 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_63932.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_63932.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_68311.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7675d62df249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Mutiscale simulation -> cyclic dependencyOverhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007675bb9fc010 Total snapshots: 37. Utilization: 100% ╎37 @Base/client.jl:550 _start() ╎ 37 @Base/client.jl:283 exec_options(opts::Base.JLOptions) ╎ 37 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ 37 @Base/Base.jl:308 (::Base.IncludeInto)(fname::String) ╎ 37 @Base/Base.jl:307 include(mapexpr::Function, mod::Module, _path::Str… ╎ 37 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module, _pat… ╎ ╎ 37 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity), mo… ╎ ╎ 37 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 37 @Base/Base.jl:308 (::Base.IncludeInto)(fname::String) ╎ ╎ 37 @Base/Base.jl:307 include(mapexpr::Function, mod::Module, _path… ╎ ╎ 37 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module,… ╎ ╎ ╎ 37 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity… ╎ ╎ ╎ 37 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ ╎ 37 …ale-cyclic-dep.jl:126 top-level scope ╎ ╎ ╎ 37 @Test/src/Test.jl:1777 macro expansion ╎ ╎ ╎ 37 …le-cyclic-dep.jl:224 macro expansion ╎ ╎ ╎ ╎ 37 @Test/src/Test.jl:929 macro expansion ╎ ╎ ╎ ╎ 37 @PlantSimEngine/…:434 dep(mapping::ModelMapping{PlantSi… ╎ ╎ ╎ ╎ 37 @PlantSimEngine/…:434 #dep#59 ╎ ╎ ╎ ╎ 37 @PlantSimEngine/…:103 dep ╎ ╎ ╎ ╎ 8 @PlantSimEngine/…:116 dep(mapping::Dict{Symbol, Tupl… 7╎ ╎ ╎ ╎ ╎ 8 @PlantSimEngine/…:280 soft_dependencies_multiscale(… ╎ ╎ ╎ ╎ 29 @PlantSimEngine/…:122 dep(mapping::Dict{Symbol, Tupl… ╎ ╎ ╎ ╎ ╎ 29 @PlantSimEngine/…:14 kwcall(::@NamedTuple{warn::Boo… 3╎ ╎ ╎ ╎ ╎ 8 @PlantSimEngine/…:18 is_graph_cyclic(dependency_gr… ╎ ╎ ╎ ╎ ╎ 5 @Compiler/….jl:1448 typeinf_ext_toplevel(mi::Core… ╎ ╎ ╎ ╎ ╎ 5 @Compiler/….jl:1439 typeinf_ext_toplevel ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:1224 typeinf_ext(interp::Compile… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:430 engine_reserve 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:431 engine_reserve ╎ ╎ ╎ ╎ ╎ 4 @Compiler/….jl:1256 typeinf_ext(interp::Compile… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…jl:4572 typeinf(interp::Compiler.Na… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…jl:1205 doworkloop(interp::Compile… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:178 (::Compiler.var"#handle1#a… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:871 abstract_call_method_with_… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:902 abstract_call_method_with… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1357 const_prop_call(interp:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:4572 typeinf(interp::Compil… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1205 doworkloop(interp::Co… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:178 (::Compiler.var"#hand… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:871 abstract_call_method… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:877 abstract_call_metho… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1012 concrete_eval_cal… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:261 (::Compiler.var"#infercall… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…jl:4581 typeinf(interp::Compiler.Na… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…jl:4388 typeinf_local(interp::Comp… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:3834 abstract_eval_basic_statem… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:3877 abstract_eval_basic_state… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:3431 abstract_eval_statement_… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:3102 abstract_eval_call ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:3084 abstract_call(interp::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:2924 abstract_call ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:2931 abstract_call(interp… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:2822 abstract_call_known… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:120 abstract_call_gf_by… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:342 find_method_matches ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:348 #find_method_matc… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:386 find_simple_meth… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:110 findall ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 @Compiler/…l:113 findall(sig::Ty… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 1 @Compiler/…l:70 findall ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 1 @Compiler/…l:70 #findall#5 ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 1 @Compiler/…l:105 _findall 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 1 @Base/…ls.jl:1415 _methods_by_ft… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 @Compiler/…l:119 findall(sig::Ty… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 1 @Compiler/…l:70 findall ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 1 @Compiler/…l:70 #findall#5 ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 1 @Compiler/…l:105 _findall 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 1 @Base/…ls.jl:1415 _methods_by_ft… 11╎ ╎ ╎ ╎ ╎ 21 @PlantSimEngine/…:24 is_graph_cyclic(dependency_gr… ╎ ╎ ╎ ╎ ╎ 2 @Compiler/….jl:1448 typeinf_ext_toplevel(mi::Core… ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:1439 typeinf_ext_toplevel ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:1256 typeinf_ext(interp::Compile… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:4570 typeinf(interp::Compiler.Na… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:1289 push! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1292 _push! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1131 _growend! ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1148 (::Base.var"#_growend!##… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ay.jl:1067 array_new_memory 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ot.jl:588 GenericMemory ╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:1440 typeinf_ext_toplevel 1╎ ╎ ╎ ╎ ╎ 1 @Compiler/….jl:1433 add_codeinsts_to_jit!(inter… 2╎ ╎ ╎ ╎ ╎ 2 @PlantSimEngine/…:49 is_graph_cyclic_(node::Plant… 3╎ ╎ ╎ ╎ ╎ 6 @PlantSimEngine/…:50 is_graph_cyclic_(node::Plant… ╎ ╎ ╎ ╎ ╎ 3 @Compiler/….jl:1448 typeinf_ext_toplevel(mi::Cor… ╎ ╎ ╎ ╎ ╎ 3 @Compiler/….jl:1439 typeinf_ext_toplevel ╎ ╎ ╎ ╎ ╎ ╎ 3 @Compiler/…jl:1256 typeinf_ext(interp::Compile… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…jl:4581 typeinf(interp::Compiler.N… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:4388 typeinf_local(interp::Comp… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:3834 abstrac: t_eval_basic_state… ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:3877 abstract_eval_basic_stat… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:3431 abstract_eval_statement… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:3102 abstract_eval_call ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:3084 abstract_call(interp:… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:2924 abstract_call ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:2931 abstract_call(inter… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 2 @Compiler/…l:2822 abstract_call_know… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:120 abstract_call_gf_b… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:342 find_method_match… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:348 #find_method_mat… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:386 find_simple_met… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 @Compiler/…l:110 findall ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 1 @Compiler/…l:113 findall(sig::Ty… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 1 @Compiler/…l:70 findall ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 1 @Compiler/…l:70 #findall#5 ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 1 @Compiler/…l:105 _findall 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 1 @Base/…ls.jl:1415 _methods_by_ft… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:338 abstract_call_gf_b… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:252 (::Compiler.var"#… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:178 (::Compiler.var"… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:871 abstract_call_m… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 @Compiler/…l:902 abstract_call_m… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 1 @Compiler/…l:1351 const_prop_cal… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 1 @Compiler/…l:607 InferenceState ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 1 @Compiler/…l:605 Compiler.Infere… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 1 @Compiler/…l:405 Compiler.Infere… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 1 @Base/…ay.jl:1289 push! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 1 @Base/…ay.jl:1292 _push! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 1 @Base/…ay.jl:1131 _growend! 1╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +9 1 @Base/…ay.jl:1131 (::Base.var"#_… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:4588 typeinf(interp::Compiler.N… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…jl:202 finish_nocycle(::Compiler.… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1002 optimize(interp::Compiler… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1027 run_passes_ipo_safe ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Compiler/…l:1043 run_passes_ipo_safe(ci:… 1╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:0 verify_ir(ir::Compiler.IR… Test Failed at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:934 Expression: contains_warn(read(fname, String), $(Expr(:escape, Test.var"#@test_nowarn##0#@test_nowarn##1"()))) ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 jfptr_wait_74507.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2556 unknown function (ip: 0x723fd4b80c23) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2496 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2311 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x723fd4b6f22c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2215 unknown function (ip: 0x723fd4b6c551) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] #test#174 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:529 unknown function (ip: 0x723fd4b6baa1) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x723fd4b61cf0) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x723fd4b6144f) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_68311.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x723fef4c5249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/PlantSimEngine/YgR8Q/test/test-mtg-multiscale-cyclic-dep.jl:224 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [4] top-level scope @ ~/.julia/packages/PlantSimEngine/YgR8Q/test/test-mtg-multiscale-cyclic-dep.jl:126 ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000723fd4bfc010 Total snapshots: 610. Utilization: 0% ╎610 @Base/client.jl:550 _start() ╎ 610 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 610 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 610 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module, _pat… ╎ 610 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity), mo… ╎ 610 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 610 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 610 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 610 @Pkg/src/API.jl:157 test ╎ ╎ 610 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 610 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 610 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 610 @Pkg/src/API.jl:529 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 610 @Pkg/src/API.jl:552 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 610 @Pkg/…erations.jl:2387 test ╎ ╎ ╎ 610 @Pkg/…erations.jl:2481 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 610 @Pkg/…rations.jl:2215 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 610 @Pkg/…rations.jl:2225 #sandbox#182 ╎ ╎ ╎ ╎ 610 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 610 @Base/file.jl:932 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 610 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 610 @Pkg/…tions.jl:2278 (::Pkg.Operations.var"#186#18… ╎ ╎ ╎ ╎ ╎ 610 @Pkg/…tions.jl:2164 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 610 @Pkg/…tions.jl:2311 (::Pkg.Operations.var"#190#… ╎ ╎ ╎ ╎ ╎ 610 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 610 @Pkg/…ions.jl:2496 (::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ ╎ 610 @Pkg/…ons.jl:2556 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 610 @Base/…ss.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 610 @Base/…ss.jl:693 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 610 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 610 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 610 @Base/…sk.jl:1228 wait() 609╎ ╎ ╎ ╎ ╎ ╎ ╎ 610 @Base/…sk.jl:1216 poptask(W::Base.Intr… [335] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/test/test-mtg-multiscale-cyclic-dep.jl:125 _ZN4llvm15ValueHandleBase17RemoveFromUseListEv at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm8DenseMapINS_18ValueMapCallbackVHIPKNS_5ValueENS_14WeakTrackingVHENS_14ValueMapConfigIS4_NS_3sys10SmartMutexILb0EEEEEEES5_NS_12DenseMapInfoISB_vEENS_6detail12DenseMapPairISB_S5_EEE4growEj at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm8ValueMapIPKNS_5ValueENS_14WeakTrackingVHENS_14ValueMapConfigIS3_NS_3sys10SmartMutexILb0EEEEEEixERKS3_.isra.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm15CloneBasicBlockEPKNS_10BasicBlockERNS_8ValueMapIPKNS_5ValueENS_14WeakTrackingVHENS_14ValueMapConfigIS6_NS_3sys10SmartMutexILb0EEEEEEERKNS_5TwineEPNS_8FunctionEPNS_14ClonedCodeInfoEPNS_15DebugInfoFinderE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm17CloneFunctionIntoEPNS_8FunctionEPKS0_RNS_8ValueMapIPKNS_5ValueENS_14WeakTrackingVHENS_14ValueMapConfigIS7_NS_3sys10SmartMutexILb0EEEEEEENS_23CloneFunctionChangeTypeERNS_15SmallVectorImplIPNS_10ReturnInstEEEPKcPNS_14ClonedCodeInfoEPNS_20ValueMapTypeRemapperEPNS_17ValueMaterializerE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) removeAddrspaces at /source/src/llvm-remove-addrspaces.cpp:352 run at /source/src/llvm-remove-addrspaces.cpp:424 run at /source/src/llvm-remove-addrspaces.cpp:450 run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) run at /source/src/pipeline.cpp:741 operator() at /source/src/jitlayers.cpp:1459 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1420 [inlined] operator() at /source/src/jitlayers.cpp:1572 [inlined] addModule at /source/src/jitlayers.cpp:2031 jl_compile_codeinst_now at /source/src/jitlayers.cpp:626 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:824 jl_compile_method_internal at /source/src/gf.c:3528 _jl_invoke at /source/src/gf.c:4006 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #run!#346 at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:698 run! at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:642 [inlined] #run!#320 at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:219 [inlined] run! at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:207 [inlined] run! at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/src/run.jl:207 unknown function (ip: 0x767581755acf) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 macro expansion at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/test/test-mtg-multiscale-cyclic-dep.jl:230 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] top-level scope at /home/pkgeval/.julia/packages/PlantSimEngine/YgR8Q/test/test-mtg-multiscale-cyclic-dep.jl:126 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 jl_toplevel_eval_flex at /source/src/toplevel.c:1024 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_63932.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_63932.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_68311.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7675d62df249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 979822842 (Pool: 979798519; Big: 24323); GC: 200 PkgEval terminated after 2721.13s: test duration exceeded the time limit