Package evaluation to test NMF on Julia 1.12.7-DEV.45 (88b38b4bc0*) started at 2026-06-24T15:53:35.468 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.71s ################################################################################ # Installation # Installing NMF... Resolving package versions... Installed DataAPI ───────────── v1.16.0 Installed RandomizedLinAlg ──── v0.1.0 Installed StatsAPI ──────────── v1.8.0 Installed AliasTables ───────── v1.1.3 Installed DocStringExtensions ─ v0.9.5 Installed IrrationalConstants ─ v0.2.6 Installed LogExpFunctions ───── v1.0.1 Installed OrderedCollections ── v1.8.2 Installed StatsBase ─────────── v0.34.12 Installed SortingAlgorithms ─── v1.2.3 Installed Preferences ───────── v1.5.2 Installed PtrArrays ─────────── v1.4.0 Installed NMF ───────────────── v1.0.3 Installed Missings ──────────── v1.2.0 Installed Statistics ────────── v1.11.1 Installed NonNegLeastSquares ── v0.4.1 Installed PrecompileTools ───── v1.3.4 Installed DataStructures ────── v0.19.5 Updating `~/.julia/environments/v1.12/Project.toml` [6ef6ca0d] + NMF v1.0.3 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [ffbed154] + DocStringExtensions v0.9.5 [92d709cd] + IrrationalConstants v0.2.6 [2ab3a3ac] + LogExpFunctions v1.0.1 [e1d29d7a] + Missings v1.2.0 [6ef6ca0d] + NMF v1.0.3 [b7351bd1] + NonNegLeastSquares v0.4.1 ⌅ [bac558e1] + OrderedCollections v1.8.2 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [43287f4e] + PtrArrays v1.4.0 [0448d7d9] + RandomizedLinAlg v0.1.0 [a2af1166] + SortingAlgorithms v1.2.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 1.67s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4305.9 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling package dependencies... Precompiling packages... 1170.1 ms ✓ Statistics 5183.8 ms ✓ IrrationalConstants 808.1 ms ✓ PtrArrays 841.3 ms ✓ DataAPI 827.0 ms ✓ StatsAPI 4371.9 ms ✓ OrderedCollections 1125.8 ms ✓ DocStringExtensions 1758.3 ms ✓ NonNegLeastSquares 1101.8 ms ✓ Preferences 892.5 ms ✓ RandomizedLinAlg 1354.7 ms ✓ Statistics → SparseArraysExt 974.0 ms ✓ AliasTables 3792.4 ms ✓ Missings 3710.0 ms ✓ DataStructures 1354.8 ms ✓ LogExpFunctions 1042.5 ms ✓ PrecompileTools 1079.3 ms ✓ SortingAlgorithms 7799.3 ms ✓ StatsBase 29657.2 ms ✓ NMF 19 dependencies successfully precompiled in 69 seconds. 15 already precompiled. 8 dependencies precompiled but different versions are currently loaded (Base64, Dates, JuliaSyntaxHighlighting, Logging, Markdown, Printf, StyledStrings and TOML). Restart julia to access the new versions. Otherwise, 7 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 85.53s ################################################################################ # Testing # Testing NMF Status `/tmp/jl_kcOPNw/Project.toml` [6ef6ca0d] NMF v1.0.3 [b7351bd1] NonNegLeastSquares v0.4.1 [aea7be01] PrecompileTools v1.3.4 [0448d7d9] RandomizedLinAlg v0.1.0 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.12 [37e2e46d] LinearAlgebra v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_kcOPNw/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.5 [ffbed154] DocStringExtensions v0.9.5 [92d709cd] IrrationalConstants v0.2.6 [2ab3a3ac] LogExpFunctions v1.0.1 [e1d29d7a] Missings v1.2.0 [6ef6ca0d] NMF v1.0.3 [b7351bd1] NonNegLeastSquares v0.4.1 ⌅ [bac558e1] OrderedCollections v1.8.2 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [43287f4e] PtrArrays v1.4.0 [0448d7d9] RandomizedLinAlg v0.1.0 [a2af1166] SortingAlgorithms v1.2.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Running tests: alspgrad: Test Failed at /home/pkgeval/.julia/packages/NMF/0XWr8/test/alspgrad.jl:13 Expression: ≈(H, Hg, atol = eps(T) ^ (1 / 4)) Evaluated: [0.57517882177174 0.8142018007000958 … 0.5520982632995161 0.7826702470306912; 0.20228218593247815 0.011413959493330239 … 0.2950597655410423 0.41226614102751313; 0.9103303379101048 0.07702713354452317 … 0.8104098802430982 0.47094155391084713] ≈ [0.3 1.0 … 0.0 0.0; 1.0 0.3 … 0.3 1.0; 0.0 0.0 … 1.0 0.3] (atol=0.0001220703125) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:13 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [4] top-level scope @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:5 alspgrad: Test Failed at /home/pkgeval/.julia/packages/NMF/0XWr8/test/alspgrad.jl:20 Expression: ≈(W, Wg, atol = eps(T) ^ (1 / 4)) Evaluated: [0.21201694692272155 1.1994903091605644 0.0; 1.1817985933829247 0.27928025653283844 0.0; … ; 0.0 0.3568783700205248 1.214170049893007; 0.0 1.182913546476903 0.29125519336805294] ≈ [0.3 1.0 0.0; 1.0 0.3 0.0; … ; 0.0 0.3 1.0; 0.0 1.0 0.3] (atol=0.0001220703125) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:20 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [4] top-level scope @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:5 alspgrad: Test Failed at /home/pkgeval/.julia/packages/NMF/0XWr8/test/alspgrad.jl:13 Expression: ≈(H, Hg, atol = eps(T) ^ (1 / 4)) Evaluated: Float32[0.21637714 0.9452507 … 0.8868928 0.19301474; 0.8164235 0.5478982 … 0.56669474 0.18447477; 0.14248025 0.5925111 … 0.75434864 0.42132735] ≈ Float32[0.3 1.0 … 0.0 0.0; 1.0 0.3 … 0.3 1.0; 0.0 0.0 … 1.0 0.3] (atol=0.018581361171917516) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:13 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [4] top-level scope @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:5 alspgrad: Test Failed at /home/pkgeval/.julia/packages/NMF/0XWr8/test/alspgrad.jl:20 Expression: ≈(W, Wg, atol = eps(T) ^ (1 / 4)) Evaluated: Float32[0.3337751 0.41986018 0.9926298; 0.5100474 0.45702493 0.7970209; … ; 0.096977115 0.9221976 0.84181243; 0.9519424 0.9767717 0.29708552] ≈ Float32[0.3 1.0 0.0; 1.0 0.3 0.0; … ; 0.0 0.3 1.0; 0.0 1.0 0.3] (atol=0.018581361171917516) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:20 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1777 [inlined] [4] top-level scope @ ~/.julia/packages/NMF/0XWr8/test/alspgrad.jl:5 Test Summary: | Pass Fail Total Time All tests | 222 4 226 3m36.7s utils | 12 12 9.8s initialization | 46 46 27.4s spa | 12 12 2m10.1s multupd | 80 80 8.6s alspgrad | 4 4 8 9.2s coorddesc | 4 4 2.1s greedycd | 40 40 15.2s interf | 24 24 9.9s RNG of the outermost testset: Xoshiro(0xf553c338ed444d17, 0x0a345a4f22050c04, 0xcd8a446e609a0f15, 0x9cfe4a9bc5f20780, 0x629832909ff3f10c) ERROR: LoadError: Some tests did not pass: 222 passed, 4 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/NMF/0XWr8/test/runtests.jl:19 Testing failed after 226.76s ERROR: LoadError: Package NMF errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2538 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 340.6s: package has test failures