Package evaluation to test MixedModels on Julia 1.12.7-DEV.45 (88b38b4bc0*) started at 2026-06-24T16:02:26.690 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.01s ################################################################################ # Installation # Installing MixedModels... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [ff71e718] + MixedModels v5.7.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [79e6a3ab] + Adapt v4.6.1 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.12.2 [69666777] + Arrow v2.8.1 [31f734f8] + ArrowTypes v2.3.0 [093aae92] + BSplineKit v0.19.2 [aae01518] + BandedMatrices v1.11.0 [c3b6d118] + BitIntegers v0.3.7 [fa961155] + CEnum v0.5.0 [5ba52731] + CodecLz4 v0.4.6 [6b39b394] + CodecZstd v0.8.7 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.1.0 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.5 [e2d170a0] + DataValueInterfaces v1.0.0 [85a47980] + Dictionaries v0.4.6 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.16.0 [31c24e10] + Distributions v0.25.127 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.7 [e2ba6199] + ExprTools v0.1.10 [442a2c76] + FastGaussQuadrature v1.3.0 [1a297f60] + FillArrays v1.16.0 [f6369f11] + ForwardDiff v1.4.1 [38e38edf] + GLM v1.9.5 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.5 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.8.0 [0f8b85d8] + JSON3 v1.14.3 [2ab3a3ac] + LogExpFunctions v1.0.1 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [ff71e718] + MixedModels v5.7.0 [7e9fb7ac] + MixedModelsDatasets v0.1.2 [78c3b35d] + Mocking v0.8.1 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.4 ⌅ [bac558e1] + OrderedCollections v1.8.2 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.6 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.4 [21216c6a] + Preferences v1.5.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.4.0 [1fd47b50] + QuadGK v2.11.3 [189a3867] + Reexport v1.2.2 [545c379f] + RegressionFormulae v0.1.4 [79098fc4] + Rmath v0.9.0 [431bcebd] + SciMLPublic v1.1.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.10 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.3 [276daf66] + SpecialFunctions v2.8.0 [03a91e81] + SplitApplyCombine v1.3.0 [aedffcd0] + Static v1.4.1 [90137ffa] + StaticArrays v1.9.18 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.12 [4c63d2b9] + StatsFuns v2.2.0 [3eaba693] + StatsModels v0.7.10 ⌅ [354b36f9] + StringViews v1.3.7 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [f269a46b] + TimeZones v1.22.2 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95f2ec] + TypedTables v1.4.6 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.11.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.6+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.64s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 3021.2 ms ✓ Combinatorics 1108.3 ms ✓ StringViews 897.7 ms ✓ ExprTools 909.8 ms ✓ TZJData 806.1 ms ✓ Indexing 966.7 ms ✓ ArrowTypes 3032.8 ms ✓ TypeUtils 4526.6 ms ✓ StructTypes 902.1 ms ✓ Scratch 1560.1 ms ✓ Lz4_jll 1989.0 ms ✓ PRIMA_jll 1410.2 ms ✓ NLopt_jll 1050.3 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 23274.0 ms ✓ FastGaussQuadrature 27373.4 ms ✓ ArrayLayouts 1038.2 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 3811.8 ms ✓ RegressionFormulae 1402.1 ms ✓ Mocking 2093.1 ms ✓ Dictionaries 876.3 ms ✓ InlineStrings → ArrowTypesExt 16755.2 ms ✓ JSON3 1063.2 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 2196.7 ms ✓ CodecLz4 2060.4 ms ✓ PRIMA 2612.3 ms ✓ NLopt 3906.5 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 30301.8 ms ✓ BandedMatrices 11079.8 ms ✓ TimeZones 1461.0 ms ✓ SplitApplyCombine 1167.5 ms ✓ JSON3 → JSON3ArrowExt 4816.3 ms ✓ BandedMatrices → BandedMatricesSparseArraysExt 4125.9 ms ✓ ArrayInterface → ArrayInterfaceBandedMatricesExt 3951.4 ms ✓ FiniteDiff → FiniteDiffBandedMatricesExt 18746.5 ms ✓ Arrow 4929.5 ms ✓ TypedTables 63814.1 ms ✓ BSplineKit 9472.7 ms ✓ MixedModelsDatasets 39038.2 ms ✓ CategoricalArrays → CategoricalArraysArrowExt 397169.9 ms ✓ MixedModels 32948.7 ms ✓ MixedModels → MixedModelsPRIMAExt 33780.9 ms ✓ MixedModels → MixedModelsForwardDiffExt 34718.7 ms ✓ MixedModels → MixedModelsFiniteDiffExt 42 dependencies successfully precompiled in 803 seconds. 139 already precompiled. 24 dependencies precompiled but different versions are currently loaded (ArgTools, Base64, Dates, Downloads, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, Logging, Markdown, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, Pkg, Printf, StyledStrings, TOML, Tar, UUIDs, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 83 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompilation completed after 820.47s ################################################################################ # Testing # Testing MixedModels Status `/tmp/jl_gRojo5/Project.toml` [4c88cf16] Aqua v0.8.16 [69666777] Arrow v2.8.1 [093aae92] BSplineKit v0.19.2 [324d7699] CategoricalArrays v1.1.1 [34da2185] Compat v4.18.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [31c24e10] Distributions v0.25.127 [7d51a73a] ExplicitImports v1.15.0 [6a86dc24] FiniteDiff v2.31.1 [f6369f11] ForwardDiff v1.4.1 [38e38edf] GLM v1.9.5 [92d709cd] IrrationalConstants v0.2.6 [0f8b85d8] JSON3 v1.14.3 [ff71e718] MixedModels v5.7.0 [7e9fb7ac] MixedModelsDatasets v0.1.2 [76087f3c] NLopt v1.2.1 [0a7d04aa] PRIMA v0.2.4 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [92933f4c] ProgressMeter v1.11.0 [545c379f] RegressionFormulae v0.1.4 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.18 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [3eaba693] StatsModels v0.7.10 [856f2bd8] StructTypes v1.11.0 [fd094767] Suppressor v0.2.8 [bd369af6] Tables v1.12.1 [9d95f2ec] TypedTables v1.4.6 [b77e0a4c] InteractiveUtils v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_gRojo5/Manifest.toml` [79e6a3ab] Adapt v4.6.1 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.16 [4fba245c] ArrayInterface v7.25.0 [4c555306] ArrayLayouts v1.12.2 [69666777] Arrow v2.8.1 [31f734f8] ArrowTypes v2.3.0 [093aae92] BSplineKit v0.19.2 [aae01518] BandedMatrices v1.11.0 [c3b6d118] BitIntegers v0.3.7 [fa961155] CEnum v0.5.0 [324d7699] CategoricalArrays v1.1.1 [5ba52731] CodecLz4 v0.4.6 [6b39b394] CodecZstd v0.8.7 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.1.0 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.2 [864edb3b] DataStructures v0.19.5 [e2d170a0] DataValueInterfaces v1.0.0 [85a47980] Dictionaries v0.4.6 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.16.0 [31c24e10] Distributions v0.25.127 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.7 [7d51a73a] ExplicitImports v1.15.0 [e2ba6199] ExprTools v0.1.10 [442a2c76] FastGaussQuadrature v1.3.0 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.31.1 [f6369f11] ForwardDiff v1.4.1 [38e38edf] GLM v1.9.5 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [313cdc1a] Indexing v1.1.1 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.8.0 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v1.0.1 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [ff71e718] MixedModels v5.7.0 [7e9fb7ac] MixedModelsDatasets v0.1.2 [78c3b35d] Mocking v0.8.1 [76087f3c] NLopt v1.2.1 [77ba4419] NaNMath v1.1.4 ⌅ [bac558e1] OrderedCollections v1.8.2 [90014a1f] PDMats v0.11.37 [0a7d04aa] PRIMA v0.2.4 [69de0a69] Parsers v2.8.6 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.4 [21216c6a] Preferences v1.5.2 [08abe8d2] PrettyTables v3.3.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.4.0 [1fd47b50] QuadGK v2.11.3 [189a3867] Reexport v1.2.2 [545c379f] RegressionFormulae v0.1.4 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [431bcebd] SciMLPublic v1.1.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.10 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.3 [276daf66] SpecialFunctions v2.8.0 [03a91e81] SplitApplyCombine v1.3.0 [860ef19b] StableRNGs v1.0.4 [aedffcd0] Static v1.4.1 [90137ffa] StaticArrays v1.9.18 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.12 [4c63d2b9] StatsFuns v2.2.0 [3eaba693] StatsModels v0.7.10 [892a3eda] StringManipulation v0.4.4 ⌅ [354b36f9] StringViews v1.3.7 [856f2bd8] StructTypes v1.11.0 [fd094767] Suppressor v0.2.8 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [f269a46b] TimeZones v1.22.2 [3bb67fe8] TranscodingStreams v0.11.3 ⌅ [c3b1956e] TypeUtils v1.14.0 [9d95f2ec] TypedTables v1.4.6 [5ced341a] Lz4_jll v1.10.1+0 [079eb43e] NLopt_jll v2.11.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [eead6e0c] PRIMA_jll v0.7.1+0 [f50d1b31] Rmath_jll v0.5.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.6+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 1575.7 ms ✓ Rmath_jll 2489.7 ms ✓ HypergeometricFunctions 1761.4 ms ✓ Rmath 5567.1 ms ✓ StatsFuns 19952.2 ms ✓ StatsModels 10434.5 ms ✓ Distributions 5568.5 ms ✓ GLM 7 dependencies successfully precompiled in 48 seconds. 47 already precompiled. 10 dependencies precompiled but different versions are currently loaded (Base64, Dates, InteractiveUtils, JuliaSyntaxHighlighting, Markdown, Preferences, Printf, Serialization, StyledStrings and TOML). Restart julia to access the new versions. Otherwise, 19 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 4159.1 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 4 seconds. 48 already precompiled. 48 dependencies precompiled but different versions are currently loaded (AliasTables, Base64, CompilerSupportLibraries_jll, DataAPI, DataStructures, Dates, Distributions, DocStringExtensions, FillArrays, FillArrays → FillArraysPDMatsExt, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStatisticsExt, HypergeometricFunctions, InteractiveUtils, IrrationalConstants, JLLWrappers, JuliaSyntaxHighlighting, LogExpFunctions, Logging, Markdown, Missings, OpenLibm_jll, OpenSpecFun_jll, OrderedCollections, PDMats, PDMats → StatsBaseExt, Preferences, Printf, PtrArrays, QuadGK, Reexport, Rmath, Rmath_jll, Serialization, SortingAlgorithms, SparseArrays, SpecialFunctions, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, StatsFuns, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML, Test and Unicode). Restart julia to access the new versions. Otherwise, 1 dependent of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 1677.4 ms ✓ Lz4_jll 1598.3 ms ✓ NLopt_jll 1579.8 ms ✓ Zstd_jll 17005.2 ms ✓ Parsers 1432.1 ms ✓ StaticArrays → StaticArraysStatisticsExt 1539.2 ms ✓ FillArrays → FillArraysStaticArraysExt 1623.5 ms ✓ Adapt → AdaptStaticArraysExt 4740.0 ms ✓ FastGaussQuadrature 10911.4 ms ✓ ForwardDiff 3807.2 ms ✓ RegressionFormulae 2420.9 ms ✓ CodecLz4 2425.1 ms ✓ NLopt 2094.6 ms ✓ CodecZstd 1005.7 ms ✓ InlineStrings → ParsersExt 16702.5 ms ✓ JSON3 26542.1 ms ✓ ArrayLayouts 22157.9 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 16743.0 ms ✓ Arrow 1119.7 ms ✓ JSON3 → JSON3ArrowExt 3652.9 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 31693.5 ms ✓ BandedMatrices 9953.1 ms ✓ MixedModelsDatasets 5416.3 ms ✓ BandedMatrices → BandedMatricesSparseArraysExt 99726.6 ms ✓ BSplineKit 171781.7 ms ✓ MixedModels 30195.7 ms ✓ MixedModels → MixedModelsForwardDiffExt 26 dependencies successfully precompiled in 490 seconds. 115 already precompiled. 73 dependencies precompiled but different versions are currently loaded (AliasTables, ArgTools, Base64, CompilerSupportLibraries_jll, DataAPI, DataStructures, DataValueInterfaces, Dates, Distributions, DocStringExtensions, Downloads, FillArrays, FillArrays → FillArraysPDMatsExt, FillArrays → FillArraysSparseArraysExt, FillArrays → FillArraysStatisticsExt, GLM, HypergeometricFunctions, InteractiveUtils, IrrationalConstants, IteratorInterfaceExtensions, JLLWrappers, JuliaSyntaxHighlighting, LibCURL, LibCURL_jll, LibGit2, LibGit2_jll, LibSSH2_jll, LogExpFunctions, Logging, Markdown, Missings, MozillaCACerts_jll, NetworkOptions, OpenLibm_jll, OpenSSL_jll, OpenSpecFun_jll, OrderedCollections, PDMats, PDMats → StatsBaseExt, Pkg, Pkg → REPLExt, PrecompileTools, Preferences, Printf, PtrArrays, QuadGK, REPL, Reexport, Rmath, Rmath_jll, Serialization, ShiftedArrays, SortingAlgorithms, SparseArrays, SpecialFunctions, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, StatsFuns, StatsModels, StyledStrings, SuiteSparse, SuiteSparse_jll, TOML, TableTraits, Tables, Tar, UUIDs, Unicode, Zlib_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 48 dependents of these packages may trigger further precompilation to work with the unexpected versions. ┌ Info: Julia Version 1.12.7-DEV.45 │ Commit 88b38b4bc0* (2026-06-23 19:11 UTC) │ Platform Info: │ OS: Linux (x86_64-linux-gnu) │ CPU: 128 × AMD EPYC 7502 32-Core Processor │ WORD_SIZE: 64 │ LLVM: libLLVM-18.1.7 (ORCJIT, znver2) │ GC: Built with stock GC │ Threads: 1 default, 0 interactive, 1 GC (on 1 virtual cores) │ Environment: │ JULIA_CPU_THREADS = 1 │ JULIA_NUM_PRECOMPILE_TASKS = 1 │ JULIA_PKG_PRECOMPILE_AUTO = 0 │ JULIA_PKGEVAL = true │ JULIA_DEPOT_PATH = /home/pkgeval/.julia:/usr/local/share/julia: │ JULIA_NUM_THREADS = 1 └ JULIA_LOAD_PATH = @:/tmp/jl_gRojo5 [ Info: LBTConfig([ILP64] libopenblas64_.so) Test Summary: | Pass Total Time Aqua | 9 9 2m01.7s Test Summary: | Pass Total Time ExplicitImports | 2 2 1m12.8s Test Summary: | Pass Total Time average | 1 1 0.2s Test Summary: | Pass Total Time densify | 3 3 2.1s Test Summary: | Pass Total Time isconstant | 13 13 2.5s Test Summary: | Pass Total Time PCA | 3 3 53.0s Test Summary: | Pass Total Time formula | 2 2 35.8s Test Summary: | Pass Total Time formula misspecification | 8 8 18.8s Test Summary: | Pass Total Time non-unicode function aliases for exports | 2 2 0.0s Test Summary: | Pass Total Time fullranknumeric | 1 1 1.4s Test Summary: | Pass Total Time fullrankcategorical | 2 2 5.7s Test Summary: | Pass Total Time dependentcolumn | 4 4 1.3s Test Summary: | Pass Total Time qr missing cells | 2 2 0.1s Test Summary: | Pass Total Time zero columns in X | 2 2 0.0s Test Summary: | Pass Total Time UBlk | 24 24 18.6s Test Summary: | Pass Total Time mul! | 36 36 1.8s ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = fit(::Type{LinearMixedModel}, f::FormulaTerm{Term, Tuple{ConstantTerm{Int64}, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{Y::Vector{Float64}, A::PooledVector{String, UInt32, Vector{UInt32}}, G::PooledVector{String, UInt32, Vector{UInt32}}, H::PooledVector{String, UInt32, Vector{UInt32}}}; weights::Vector{Any}, wts::Vector{Float64}, contrasts::Dict{Symbol, Any}, σ::Nothing, amalgamate::Bool, kwargs::Base.Pairs{Symbol, Bool, Nothing, @NamedTuple{progress::Bool}}) at linearmixedmodel.jl:234 └ @ Core ~/.julia/packages/MixedModels/QWl8z/src/linearmixedmodel.jl:234 Test Summary: | Pass Total Time reweight! | 2 2 13.3s Test Summary: | Pass Total Time rankupdate! | 2 2 3.0s Test Summary: | Pass Total Time lmulλ! | 1 1 12.4s Test Summary: | Pass Total Time Xymat | 15 15 1.9s Test Summary: | Pass Broken Total Time XymatSparse | 12 1 13 1m02.6s Precompiling packages... 3445.5 ms ✓ StringManipulation 47055.6 ms ✓ PrettyTables 84697.9 ms ✓ DataFrames 3 dependencies successfully precompiled in 135 seconds. 33 already precompiled. 30 dependencies precompiled but different versions are currently loaded (Base64, Compat, Compat → CompatLinearAlgebraExt, DataAPI, DataStructures, DataValueInterfaces, Dates, Future, InlineStrings, InteractiveUtils, IteratorInterfaceExtensions, JuliaSyntaxHighlighting, Markdown, Missings, OrderedCollections, PooledArrays, PrecompileTools, Preferences, Printf, REPL, Reexport, SentinelArrays, SortingAlgorithms, Statistics, StyledStrings, TOML, TableTraits, Tables, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 3 dependents of these packages may trigger further precompilation to work with the unexpected versions. Test Summary: | Pass Total Time scalarReMat | 39 39 24.9s Test Summary: | Pass Total Time RandomEffectsTerm | 18 18 21.4s Test Summary: | Pass Total Time random effects term syntax | 24 24 35.3s Precompiling packages... 5210.3 ms ✓ CategoricalArrays 1 dependency successfully precompiled in 5 seconds. 12 already precompiled. 11 dependencies precompiled but different versions are currently loaded (Compat, Compat → CompatLinearAlgebraExt, DataAPI, Dates, Future, Missings, Printf, Statistics, TOML, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 2 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 1613.5 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 1 dependency successfully precompiled in 2 seconds. 27 already precompiled. 26 dependencies precompiled but different versions are currently loaded (AliasTables, CategoricalArrays, Compat, Compat → CompatLinearAlgebraExt, DataAPI, DataStructures, Dates, DocStringExtensions, Future, IrrationalConstants, LogExpFunctions, Missings, OrderedCollections, Printf, PtrArrays, Serialization, SortingAlgorithms, SparseArrays, Statistics, Statistics → SparseArraysExt, StatsAPI, StatsBase, SuiteSparse_jll, TOML, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 2 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 943.3 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 1 dependency successfully precompiled in 1 seconds. 14 already precompiled. 13 dependencies precompiled but different versions are currently loaded (CategoricalArrays, Compat, Compat → CompatLinearAlgebraExt, DataAPI, Dates, Future, Missings, Printf, Statistics, StructTypes, TOML, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 2 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 981.9 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 1 dependency successfully precompiled in 1 seconds. 14 already precompiled. 13 dependencies precompiled but different versions are currently loaded (CategoricalArrays, Compat, Compat → CompatLinearAlgebraExt, DataAPI, Dates, Future, Missings, Printf, SentinelArrays, Statistics, TOML, UUIDs and Unicode). Restart julia to access the new versions. Otherwise, 2 dependents of these packages may trigger further precompilation to work with the unexpected versions. Precompiling packages... 5840.1 ms ✓ CategoricalArrays → CategoricalArraysArrowExt 1 dependency successfully precompiled in 6 seconds. 55 already precompiled. 54 dependencies precompiled but different versions are currently loaded (ArgTools, Arrow, ArrowTypes, BitIntegers, CategoricalArrays, CategoricalArrays → CategoricalArraysSentinelArraysExt, CodecLz4, CodecZstd, Compat, Compat → CompatLinearAlgebraExt, CompilerSupportLibraries_jll, ConcurrentUtilities, DataAPI, DataValueInterfaces, Dates, Downloads, EnumX, ExprTools, Future, InlineStrings, InlineStrings → ArrowTypesExt, IteratorInterfaceExtensions, JLLWrappers, LibCURL, LibCURL_jll, LibSSH2_jll, Lz4_jll, Missings, Mmap, Mocking, MozillaCACerts_jll, NetworkOptions, OpenSSL_jll, OrderedCollections, PooledArrays, Preferences, Printf, Scratch, SentinelArrays, Serialization, Statistics, StringViews, TOML, TZJData, TableTraits, Tables, TimeZones, TranscodingStreams, UUIDs, Unicode, Zlib_jll, Zstd_jll, nghttp2_jll and p7zip_jll). Restart julia to access the new versions. Otherwise, 2 dependents of these packages may trigger further precompilation to work with the unexpected versions. Test Summary: | Pass Total Time Grouping | 1 1 0.5s Test Summary: | Pass Total Time Grouping pseudo-contrasts | 10 10 15.8s Test Summary: | Pass Broken Total Time Auto application of Grouping() | 36 3 39 17.2s Test Summary: | Pass Total Time LMM from MixedModel | 3 3 7.2s Test Summary: | Pass Total Time offset | 2 2 1.9s Test Summary: | Pass Total Time Dyestuff | 83 83 1m12.1s ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/QWl8z/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/QWl8z/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/QWl8z/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/QWl8z/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/QWl8z/src/MixedModelsNLoptExt.jl:132 ┌ Warning: NLopt was roundoff limited └ @ MixedModels.MixedModelsNLoptExt ~/.julia/packages/MixedModels/QWl8z/src/MixedModelsNLoptExt.jl:132 Test Summary: | Pass Total Time Dyestuff2 | 11 11 6.7s Test Summary: | Pass Total Time penicillin | 26 26 6.6s Test Summary: | Pass Total Time pastes | 22 22 8.3s Test Summary: | Pass Total Time InstEval | 26 26 4.0s ┌ Warning: optsum was saved with an older version of MixedModels.jl: consider resaving. └ @ MixedModels ~/.julia/packages/MixedModels/QWl8z/src/serialization.jl:135 ┌ Warning: optsum was saved with an older version of MixedModels.jl: consider resaving. └ @ MixedModels ~/.julia/packages/MixedModels/QWl8z/src/serialization.jl:135 ┌ Warning: optsum was saved with an older version of MixedModels.jl: consider resaving. └ @ MixedModels ~/.julia/packages/MixedModels/QWl8z/src/serialization.jl:135 ┌ Warning: optsum was saved with an older version of MixedModels.jl: consider resaving. └ @ MixedModels ~/.julia/packages/MixedModels/QWl8z/src/serialization.jl:135 Test Summary: | Pass Total Time sleep | 139 139 1m26.6s Test Summary: | Pass Total Time d3 | 6 6 24.0s Test Summary: | Pass Total Time kb07 | 6 6 22.7s Test Summary: | Pass Total Time oxide | 1 1 13.5s Test Summary: | Pass Total Time Rank deficient | 7 7 5.2s Test Summary: | Pass Total Time coeftable | 1 1 0.0s ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = fit(::Type{LinearMixedModel}, f::FormulaTerm{Term, Tuple{ConstantTerm{Int64}, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{a::Vector{Float64}, b::Vector{Float64}, c::PooledVector{String, UInt32, Vector{UInt32}}, w1::Vector{Int64}, w2::Vector{Float64}}; weights::Vector{Any}, wts::Vector{Int64}, contrasts::Dict{Symbol, Any}, σ::Nothing, amalgamate::Bool, kwargs::Base.Pairs{Symbol, Bool, Nothing, @NamedTuple{progress::Bool}}) at linearmixedmodel.jl:234 └ @ Core ~/.julia/packages/MixedModels/QWl8z/src/linearmixedmodel.jl:234 Test Summary: | Pass Total Time wts | 3 3 3.6s Test Summary: | Pass Total Time unifying ReMat eltypes | 3 3 4.0s Test Summary: | Pass Total Time recovery from misscaling | 2 2 9.2s Test Summary: | Pass Total Time methods we don't define | 4 4 0.7s Test Summary: | Pass Total Time GLMM from MixedModel | 2 2 12.2s Test Summary: | Pass Total Time Type for instance | 9 9 0.2s Test Summary: | Pass Total Time contra | 41 41 21.5s ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = fit(::Type{GeneralizedLinearMixedModel}, f::FormulaTerm{FunctionTerm{typeof(/), Vector{Term}}, Tuple{ConstantTerm{Int64}, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::@NamedTuple{herd::Arrow.DictEncoded{String, Int8, Arrow.List{String, Int32, Vector{UInt8}}}, period::Arrow.DictEncoded{String, Int8, Arrow.List{String, Int32, Vector{UInt8}}}, incid::Arrow.Primitive{Int8, Vector{Int8}}, hsz::Arrow.Primitive{Int8, Vector{Int8}}}, d::Binomial{Float64}, l::LogitLink; weights::Vector{Any}, wts::Vector{Float64}, contrasts::Dict{Symbol, Any}, offset::Vector{Any}, amalgamate::Bool, kwargs::Base.Pairs{Symbol, Any, Nothing, @NamedTuple{progress::Bool, init_from_lmm::Vector{Symbol}}}) at generalizedlinearmixedmodel.jl:187 └ @ Core ~/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:187 ┌ Warning: `wts` keyword argument is deprecated, use `weights` instead │ caller = GeneralizedLinearMixedModel(f::FormulaTerm{FunctionTerm{typeof(/), Vector{Term}}, Tuple{ConstantTerm{Int64}, Term, FunctionTerm{typeof(|), Vector{AbstractTerm}}}}, tbl::DataFrame, d::Binomial{Float64}, l::LogitLink; kwargs::Base.Pairs{Symbol, Vector{Float64}, Nothing, @NamedTuple{wts::Vector{Float64}}}) at generalizedlinearmixedmodel.jl:352 └ @ Core ~/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:352 Test Summary: | Pass Total Time cbpp | 19 19 23.0s Test Summary: | Pass Total Time verbagg | 4 4 19.4s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 363 running 1 of 1 signal (10): User defined signal 1 _setindex_scalar! at /source/usr/share/julia/stdlib/v1.12/SparseArrays/src/sparsematrix.jl:0 setindex! at /source/usr/share/julia/stdlib/v1.12/SparseArrays/src/sparsematrix.jl:3192 [inlined] setindex! at ./subarray.jl:386 [inlined] _setindex! at ./abstractarray.jl:1473 [inlined] setindex! at ./abstractarray.jl:1443 [inlined] macro expansion at ./broadcast.jl:995 [inlined] macro expansion at ./simdloop.jl:77 [inlined] copyto! at ./broadcast.jl:994 [inlined] copyto! at ./broadcast.jl:947 [inlined] materialize! at ./broadcast.jl:905 [inlined] materialize! at ./broadcast.jl:902 [inlined] _generic_matmatmul! at /source/usr/share/julia/stdlib/v1.12/SparseArrays/src/linalg.jl:537 macro expansion at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/generic.jl:108 [inlined] generic_matmatmul! at /source/usr/share/julia/stdlib/v1.12/SparseArrays/src/linalg.jl:458 [inlined] generic_matmatmul_wrapper! at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/matmul.jl:343 [inlined] _mul! at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/matmul.jl:328 [inlined] mul! at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/matmul.jl:297 unknown function (ip: 0x760827e4c3d4) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 updateL! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/linearmixedmodel.jl:1417 reweight! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/linearmixedmodel.jl:1099 unknown function (ip: 0x7608060e9a11) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 deviance! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:143 deviance! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:141 [inlined] #pirls!#111 at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:649 pirls! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:614 [inlined] #_objective!#110 at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:571 _objective! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:568 [inlined] obj at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/MixedModelsNLoptExt.jl:72 nlopt_callback_wrapper at /home/pkgeval/.julia/packages/NLopt/wMgqN/src/NLopt.jl:522 unknown function (ip: 0x760827ead5cb) at (unknown file) newuoa at /home/pkgeval/.julia/artifacts/5a47f63acafe529d6a1db5343de2e8c2a6b6c38a/lib/libnlopt.so (unknown line) nlopt_optimize at /home/pkgeval/.julia/artifacts/5a47f63acafe529d6a1db5343de2e8c2a6b6c38a/lib/libnlopt.so (unknown line) nlopt_optimize at /home/pkgeval/.julia/packages/NLopt/wMgqN/src/libnlopt.jl:182 [inlined] optimize! at /home/pkgeval/.julia/packages/NLopt/wMgqN/src/NLopt.jl:849 optimize at /home/pkgeval/.julia/packages/NLopt/wMgqN/src/NLopt.jl:863 unknown function (ip: 0x760827f11cd6) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #optimize!#3 at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/MixedModelsNLoptExt.jl:89 optimize! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/MixedModelsNLoptExt.jl:61 [inlined] #optimize!#41 at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/optsummary.jl:181 optimize! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/optsummary.jl:181 [inlined] #fit!#89 at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:292 fit! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:251 unknown function (ip: 0x760827e9fe50) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #fit#86 at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:187 fit at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:174 unknown function (ip: 0x760827e235bc) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #fit#85 at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:171 unknown function (ip: 0x760827e1dcf3) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 fit at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:163 unknown function (ip: 0x760827e1d923) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 #fit#88 at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:212 [inlined] fit at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:204 [inlined] fit at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:204 unknown function (ip: 0x760827e1d563) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_63932.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_63932.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_68311.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x76083e19a249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#406 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:693 wait at ./process.jl:686 jfptr_wait_74507.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2556 unknown function (ip: 0x7cc9ff582c23) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2496 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2311 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2164 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2278 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x7cc9ff5720ac) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2225 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2215 unknown function (ip: 0x7cc9ff56d589) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2481 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2387 [inlined] #test#174 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:552 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:529 unknown function (ip: 0x7cc9ff56ba41) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x7cc9ff562510) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x7cc9ff5603df) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_68311.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7cca19eb7249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007cc9ff5fc010 Total snapshots: 428. Utilization: 0% ╎428 @Base/client.jl:550 _start() ╎ 428 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 428 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 428 @Base/loading.jl:2933 _include(mapexpr::Function, mod::Module, _pat… ╎ 428 @Base/loading.jl:2873 include_string(mapexpr::typeof(identity), mo… ╎ 428 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 428 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 428 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 428 @Pkg/src/API.jl:157 test ╎ ╎ 428 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 428 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 428 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 428 @Pkg/src/API.jl:529 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 428 @Pkg/src/API.jl:552 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 428 @Pkg/…erations.jl:2387 test ╎ ╎ ╎ 428 @Pkg/…erations.jl:2481 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 428 @Pkg/…rations.jl:2215 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 428 @Pkg/…rations.jl:2225 #sandbox#182 ╎ ╎ ╎ ╎ 428 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 428 @Base/file.jl:932 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 428 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 428 @Pkg/…tions.jl:2278 (::Pkg.Operations.var"#186#18… ╎ ╎ ╎ ╎ ╎ 428 @Pkg/…tions.jl:2164 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 428 @Pkg/…tions.jl:2311 (::Pkg.Operations.var"#190#… ╎ ╎ ╎ ╎ ╎ 428 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 428 @Pkg/…ions.jl:2496 (::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ ╎ 428 @Pkg/…ons.jl:2556 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 428 @Base/…ss.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 428 @Base/…ss.jl:693 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 428 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ 428 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 428 @Base/…sk.jl:1228 wait() 427╎ ╎ ╎ ╎ ╎ ╎ ╎ 428 @Base/…sk.jl:1216 poptask(W::Base.Intr… [363] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/MixedModels/QWl8z/test/pirls.jl:194 searchsortedfirst at ./sort.jl:189 [inlined] searchsortedfirst at ./sort.jl:308 [inlined] #searchsortedfirst#4 at ./sort.jl:310 [inlined] searchsortedfirst at ./sort.jl:310 [inlined] getindex at /source/usr/share/julia/stdlib/v1.12/SparseArrays/src/sparsematrix.jl:2748 [inlined] _copy_adjtrans! at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/transpose.jl:235 copy_transpose! at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/transpose.jl:199 [inlined] copy_transpose! at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/matmul.jl:908 [inlined] _generic_matmatmul! at /source/usr/share/julia/stdlib/v1.12/SparseArrays/src/linalg.jl:520 macro expansion at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/generic.jl:108 [inlined] generic_matmatmul! at /source/usr/share/julia/stdlib/v1.12/SparseArrays/src/linalg.jl:458 [inlined] generic_matmatmul_wrapper! at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/matmul.jl:343 [inlined] _mul! at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/matmul.jl:328 [inlined] mul! at /source/usr/share/julia/stdlib/v1.12/LinearAlgebra/src/matmul.jl:297 unknown function (ip: 0x760827e4c3d4) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 updateL! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/linearmixedmodel.jl:1417 reweight! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/linearmixedmodel.jl:1099 unknown function (ip: 0x7608060e9a11) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 deviance! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:143 deviance! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:141 [inlined] #pirls!#111 at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:637 pirls! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:614 [inlined] #_objective!#110 at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:571 _objective! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:568 [inlined] obj at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/MixedModelsNLoptExt.jl:72 nlopt_callback_wrapper at /home/pkgeval/.julia/packages/NLopt/wMgqN/src/NLopt.jl:522 unknown function (ip: 0x760827ead5cb) at (unknown file) newuoa at /home/pkgeval/.julia/artifacts/5a47f63acafe529d6a1db5343de2e8c2a6b6c38a/lib/libnlopt.so (unknown line) nlopt_optimize at /home/pkgeval/.julia/artifacts/5a47f63acafe529d6a1db5343de2e8c2a6b6c38a/lib/libnlopt.so (unknown line) nlopt_optimize at /home/pkgeval/.julia/packages/NLopt/wMgqN/src/libnlopt.jl:182 [inlined] optimize! at /home/pkgeval/.julia/packages/NLopt/wMgqN/src/NLopt.jl:849 optimize at /home/pkgeval/.julia/packages/NLopt/wMgqN/src/NLopt.jl:863 unknown function (ip: 0x760827f11cd6) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #optimize!#3 at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/MixedModelsNLoptExt.jl:89 optimize! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/MixedModelsNLoptExt.jl:61 [inlined] #optimize!#41 at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/optsummary.jl:181 optimize! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/optsummary.jl:181 [inlined] #fit!#89 at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:292 fit! at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:251 unknown function (ip: 0x760827e9fe50) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #fit#86 at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:187 fit at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:174 unknown function (ip: 0x760827e235bc) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #fit#85 at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:171 unknown function (ip: 0x760827e1dcf3) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 fit at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:163 unknown function (ip: 0x760827e1d923) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_invoke at /source/src/gf.c:4021 #fit#88 at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:212 [inlined] fit at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:204 [inlined] fit at /home/pkgeval/.julia/packages/MixedModels/QWl8z/src/generalizedlinearmixedmodel.jl:204 unknown function (ip: 0x760827e1d563) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_63932.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2873 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2933 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_63932.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_68311.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2397 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x76083e19a249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 468402854 (Pool: 468398176; Big: 4678); GC: 131 PkgEval terminated after 2721.66s: test duration exceeded the time limit