Package evaluation of Pioneer on Julia 1.11.5 (760b2e5b739) started at 2025-05-30T11:39:58.882 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 6.34s ################################################################################ # Installation # Installing Pioneer... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [585db54e] + Pioneer v0.1.12 Updating `~/.julia/environments/v1.11/Manifest.toml` Precompiling CUDA_Driver_jll... 774.4 ms ✓ JLLWrappers 1381.4 ms ✓ CUDA_Driver_jll 2 dependencies successfully precompiled in 6 seconds. 24 already precompiled. Precompiling CUDA_Runtime_jll... 3009.1 ms ✓ CUDA_Runtime_jll 1 dependency successfully precompiled in 7 seconds. 27 already precompiled. [47edcb42] + ADTypes v1.14.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [c7e460c6] + ArgParse v1.2.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.1 ⌅ [69666777] + Arrow v2.7.0 [31f734f8] + ArrowTypes v2.3.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [47718e42] + BioGenerics v0.1.5 [d1d4a3ce] + BitFlags v0.1.9 [c3b6d118] + BitIntegers v0.3.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [324d7699] + CategoricalArrays v0.10.8 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [da1fd8a2] + CodeTracking v1.3.9 [5ba52731] + CodecLz4 v0.4.6 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [35d6a980] + ColorSchemes v3.29.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.5.8 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] + Dictionaries v0.4.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.4 [e30172f5] + Documenter 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LoopVectorization v0.12.172 [6f1432cf] + LoweredCodeUtils v3.3.0 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [d0879d2d] + MarkdownAST v0.1.2 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.2 [e1d29d7a] + Missings v1.2.0 [78c3b35d] + Mocking v0.8.1 [2e0e35c7] + Moshi v0.3.5 [6f286f6a] + MultivariateStats v0.10.3 [d41bc354] + NLSolversBase v7.9.1 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.21 ⌅ [e7bfaba1] + NumericalIntegration v0.2.0 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.5.0 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.1 [3beb2ed1] + PDFmerger v0.3.2 [90014a1f] + PDMats v0.11.35 [e4faabce] + PProf v3.2.0 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [585db54e] + Pioneer v0.1.12 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.3 [91a5bcdd] + Plots v1.40.13 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [f27b6e38] + Polynomials 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[2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [efcefdf7] + PCRE2_jll v10.42.0+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 23.5s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling CUDA_Driver_jll... 748.4 ms ✓ CUDA_Driver_jll 1 dependency successfully precompiled in 5 seconds. 25 already precompiled. Precompiling CUDA_Runtime_jll... 2189.5 ms ✓ CUDA_Runtime_jll 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. Precompiling package dependencies... Precompilation completed after 1384.27s ################################################################################ # Testing # Testing Pioneer Status `/tmp/jl_pORvpo/Project.toml` [c7e460c6] ArgParse v1.2.0 ⌅ [69666777] Arrow v2.7.0 [31f734f8] ArrowTypes v2.3.0 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.0.3 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [85a47980] Dictionaries v0.4.5 [31c24e10] Distributions v0.25.120 [e30172f5] Documenter v1.11.4 [35a29f4d] DocumenterTools v0.1.20 [8f5d6c58] EzXML v1.2.1 [c2308a5c] FASTX v2.1.7 [442a2c76] FastGaussQuadrature v1.0.2 [cd3eb016] HTTP v1.10.16 [842dd82b] InlineStrings v1.4.3 ⌅ [a98d9a8b] Interpolations v0.15.1 ⌅ [033835bb] JLD2 v0.5.0 [682c06a0] JSON v0.21.4 [5ab0869b] KernelDensity v0.6.9 [b964fa9f] LaTeXStrings v1.4.0 [9c8b4983] LightXML v0.9.1 ⌅ [7ed4a6bd] LinearSolve v2.39.1 [bdcacae8] LoopVectorization v0.12.172 [442fdcdd] Measures v0.3.2 ⌅ [e7bfaba1] NumericalIntegration v0.2.0 [429524aa] Optim v1.12.0 [3beb2ed1] PDFmerger v0.3.2 [e4faabce] PProf v3.2.0 [585db54e] Pioneer v0.1.12 [91a5bcdd] Plots v1.40.13 [f27b6e38] Polynomials v4.0.19 [54e16d92] PrettyPrinting v0.4.2 [49802e3a] ProgressBars v1.5.1 [295af30f] Revise v3.8.0 [91c51154] SentinelArrays v1.4.8 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.5 [f3b207a7] StatsPlots v0.15.7 [bd369af6] Tables v1.12.0 [009559a3] XGBoost v2.5.1 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_pORvpo/Manifest.toml` [47edcb42] ADTypes v1.14.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [c7e460c6] ArgParse v1.2.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.1 ⌅ [69666777] Arrow v2.7.0 [31f734f8] ArrowTypes v2.3.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [47718e42] BioGenerics v0.1.5 [d1d4a3ce] BitFlags v0.1.9 [c3b6d118] BitIntegers v0.3.5 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [da1fd8a2] CodeTracking v1.3.9 [5ba52731] CodecLz4 v0.4.6 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [85a47980] Dictionaries v0.4.5 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌅ [a0c0ee7d] DifferentiationInterface v0.6.54 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.4 [e30172f5] Documenter v1.11.4 [35a29f4d] DocumenterTools v0.1.20 [4e289a0a] EnumX v1.0.5 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [8f5d6c58] EzXML v1.2.1 [c2308a5c] FASTX v2.1.7 [c87230d0] FFMPEG v0.4.2 [7a1cc6ca] FFTW v1.8.1 [442a2c76] FastGaussQuadrature v1.0.2 [29a986be] FastLapackInterface v2.0.4 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [08572546] FlameGraphs v1.1.0 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.0.1 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [28b8d3ca] GR v0.73.16 [d7ba0133] Git v1.4.0 [42e2da0e] Grisu v1.0.2 [708ec375] Gumbo v0.8.3 [cd3eb016] HTTP v1.10.16 [3e5b6fbb] HostCPUFeatures v0.1.17 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 [313cdc1a] Indexing v1.1.1 [9b13fd28] IndirectArrays v1.0.0 [842dd82b] InlineStrings v1.4.3 ⌅ [a98d9a8b] Interpolations v0.15.1 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.5.0 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [ae98c720] Jieko v0.2.1 [aa1ae85d] JuliaInterpreter v0.10.3 [ef3ab10e] KLU v0.6.0 [5ab0869b] KernelDensity v0.6.9 ⌅ [ba0b0d4f] Krylov v0.9.10 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.8 [10f19ff3] LayoutPointers v0.1.17 [0e77f7df] LazilyInitializedFields v1.3.0 [5078a376] LazyArrays v2.6.1 [1d6d02ad] LeftChildRightSiblingTrees v0.2.0 [9c8b4983] LightXML v0.9.1 [d3d80556] LineSearches v7.3.0 ⌅ [7ed4a6bd] LinearSolve v2.39.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [bdcacae8] LoopVectorization v0.12.172 [6f1432cf] LoweredCodeUtils v3.3.0 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [d0879d2d] MarkdownAST v0.1.2 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.2 [e1d29d7a] Missings v1.2.0 [78c3b35d] Mocking v0.8.1 [2e0e35c7] Moshi v0.3.5 [6f286f6a] MultivariateStats v0.10.3 [d41bc354] NLSolversBase v7.9.1 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.21 ⌅ 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[a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [d091e8ba] Xorg_libXfixes_jll v6.0.1+0 [a51aa0fd] Xorg_libXi_jll v1.8.3+0 [d1454406] Xorg_libXinerama_jll v1.1.6+0 [ec84b674] Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [cc61e674] Xorg_libxkbfile_jll v1.1.3+0 [e920d4aa] Xorg_xcb_util_cursor_jll v0.1.4+0 [12413925] Xorg_xcb_util_image_jll v0.4.0+1 [2def613f] Xorg_xcb_util_jll v0.4.0+1 [975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1 [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1 [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1 [35661453] Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [3161d3a3] Zstd_jll v1.5.7+1 [35ca27e7] eudev_jll v3.2.9+0 [214eeab7] fzf_jll v0.61.1+0 [1a1c6b14] gperf_jll v3.3.0+0 [a4ae2306] libaom_jll v3.11.0+0 [0ac62f75] libass_jll v0.15.2+0 [1183f4f0] libdecor_jll v0.2.2+0 [2db6ffa8] libevdev_jll v1.11.0+0 [f638f0a6] libfdk_aac_jll v2.0.3+0 [36db933b] libinput_jll v1.18.0+0 [b53b4c65] libpng_jll v1.6.48+0 [47bcb7c8] libsass_jll v3.6.6+0 [f27f6e37] libvorbis_jll v1.3.7+2 [009596ad] mtdev_jll v1.1.6+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [cf2c5f97] pprof_jll v2.0.0+0 ⌅ [1270edf5] x264_jll v2021.5.5+0 ⌅ [dfaa095f] x265_jll v3.5.0+0 [d8fb68d0] xkbcommon_jll v1.8.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling CSV... 817.8 ms ✓ InlineStrings → ParsersExt 1157.6 ms ✓ WeakRefStrings 13011.8 ms ✓ CSV 3 dependencies successfully precompiled in 16 seconds. 27 already precompiled. Precompiling DataFrames... 15243.0 ms ✓ PrettyTables 36779.5 ms ✓ DataFrames 2 dependencies successfully precompiled in 53 seconds. 31 already precompiled. Precompiling FASTX... 6717.0 ms ✓ SIMD 9352.2 ms ✓ Automa 9762.4 ms ✓ FASTX 3 dependencies successfully precompiled in 26 seconds. 9 already precompiled. Precompiling Interpolations... 833.0 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 3165.1 ms ✓ Interpolations 2 dependencies successfully precompiled in 4 seconds. 28 already precompiled. Precompiling StaticArraysStatisticsExt... 790.9 ms ✓ StaticArrays → StaticArraysStatisticsExt 1 dependency successfully precompiled in 1 seconds. 9 already precompiled. Precompiling CategoricalArraysJSONExt... 839.8 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 1 dependency successfully precompiled in 1 seconds. 18 already precompiled. Precompiling JLD2... 24223.5 ms ✓ JLD2 1 dependency successfully precompiled in 24 seconds. 31 already precompiled. Precompiling LoopVectorization... 1059.2 ms ✓ CPUSummary 1440.1 ms ✓ StaticArrayInterface 497.0 ms ✓ BitTwiddlingConvenienceFunctions 570.5 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 553.6 ms ✓ CloseOpenIntervals 666.8 ms ✓ LayoutPointers 747.0 ms ✓ HostCPUFeatures 738.8 ms ✓ PolyesterWeave 6409.7 ms ✓ VectorizationBase 1227.4 ms ✓ SLEEFPirates 20439.4 ms ✓ LoopVectorization 11 dependencies successfully precompiled in 35 seconds. 25 already precompiled. Precompiling ArrayInterfaceChainRulesCoreExt... 471.6 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 1 dependency successfully precompiled in 1 seconds. 11 already precompiled. Precompiling ArrayInterfaceStaticArraysCoreExt... 421.4 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1 dependency successfully precompiled in 1 seconds. 5 already precompiled. Precompiling StaticArrayInterfaceStaticArraysExt... 848.8 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1 dependency successfully precompiled in 1 seconds. 20 already precompiled. Precompiling LinearSolve... 1542.3 ms ✓ Setfield 433.5 ms ✓ SciMLStructures 2227.1 ms ✓ SciMLOperators 655.8 ms ✓ oneTBB_jll 2295.1 ms ✓ SymbolicIndexingInterface 1291.2 ms ✓ IntelOpenMP_jll 1023.5 ms ✓ StrideArraysCore 631.5 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 808.7 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 2704.9 ms ✓ RecursiveArrayTools 1288.2 ms ✓ MKL_jll 883.3 ms ✓ Polyester 1423.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 12123.4 ms ✓ SciMLBase 5737.6 ms ✓ TriangularSolve 1615.8 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 20349.7 ms ✓ RecursiveFactorization 23334.5 ms ✓ LinearSolve 3360.7 ms ✓ LinearSolve → LinearSolveRecursiveArrayToolsExt 19 dependencies successfully precompiled in 84 seconds. 118 already precompiled. Precompiling LazyArraysStaticArraysExt... 1478.1 ms ✓ LazyArrays → LazyArraysStaticArraysExt 1 dependency successfully precompiled in 2 seconds. 17 already precompiled. Precompiling ConstructionBaseStaticArraysExt... 815.2 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1 dependency successfully precompiled in 1 seconds. 10 already precompiled. Precompiling TimeZonesRecipesBaseExt... 1328.0 ms ✓ TimeZones → TimeZonesRecipesBaseExt 1 dependency successfully precompiled in 1 seconds. 27 already precompiled. Precompiling CategoricalArraysRecipesBaseExt... 1088.8 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 1 dependency successfully precompiled in 1 seconds. 16 already precompiled. Precompiling StaticArraysExt... 947.4 ms ✓ Accessors → StaticArraysExt 1 dependency successfully precompiled in 1 seconds. 18 already precompiled. Precompiling Optim... 600.9 ms ✓ Parameters 773.2 ms ✓ CommonSubexpressions 700.6 ms ✓ FiniteDiff 2393.0 ms ✓ StatsBase 2630.9 ms ✓ SpecialFunctions 628.5 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 561.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 7319.1 ms ✓ ForwardDiff 1005.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1214.4 ms ✓ NLSolversBase 2268.7 ms ✓ LineSearches 5948.1 ms ✓ Optim 12 dependencies successfully precompiled in 27 seconds. 57 already precompiled. Precompiling DifferentiationInterfaceChainRulesCoreExt... 521.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 1 dependency successfully precompiled in 1 seconds. 11 already precompiled. Precompiling DifferentiationInterfaceStaticArraysExt... 793.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1 dependency successfully precompiled in 1 seconds. 10 already precompiled. Precompiling DifferentiationInterfaceGPUArraysCoreExt... 458.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 1 dependency successfully precompiled in 1 seconds. 6 already precompiled. Precompiling FiniteDiffStaticArraysExt... 761.9 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1 dependency successfully precompiled in 1 seconds. 21 already precompiled. Precompiling LogExpFunctionsChainRulesCoreExt... 1550.1 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1 dependency successfully precompiled in 2 seconds. 11 already precompiled. Precompiling LogExpFunctionsInverseFunctionsExt... 480.6 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1 dependency successfully precompiled in 1 seconds. 4 already precompiled. Precompiling SpecialFunctionsExt... 908.3 ms ✓ ColorVectorSpace → SpecialFunctionsExt 1332.5 ms ✓ LoopVectorization → SpecialFunctionsExt 2 dependencies successfully precompiled in 3 seconds. 48 already precompiled. Precompiling SpecialFunctionsChainRulesCoreExt... 2066.4 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1 dependency successfully precompiled in 2 seconds. 18 already precompiled. Precompiling RecursiveArrayToolsForwardDiffExt... 1414.8 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 1 dependency successfully precompiled in 2 seconds. 57 already precompiled. Precompiling ForwardDiffStaticArraysExt... 1150.0 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1 dependency successfully precompiled in 1 seconds. 22 already precompiled. Precompiling ForwardDiffExt... 1557.7 ms ✓ LoopVectorization → ForwardDiffExt 1 dependency successfully precompiled in 2 seconds. 56 already precompiled. Precompiling CategoricalArraysStatsBaseExt... 1100.3 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 1 dependency successfully precompiled in 1 seconds. 30 already precompiled. Precompiling Plots... 4170.9 ms ✓ Colors 2744.7 ms ✓ Latexify 461.0 ms ✓ RelocatableFolders 659.3 ms ✓ Xorg_libICE_jll 656.5 ms ✓ Libffi_jll 565.7 ms ✓ Wayland_protocols_jll 647.3 ms ✓ Libuuid_jll 649.6 ms ✓ LLVMOpenMP_jll 658.1 ms ✓ fzf_jll 659.5 ms ✓ Ogg_jll 641.2 ms ✓ mtdev_jll 660.5 ms ✓ x265_jll 660.6 ms ✓ x264_jll 651.1 ms ✓ FriBidi_jll 660.0 ms ✓ Graphite2_jll 543.9 ms ✓ EpollShim_jll 741.1 ms ✓ Gettext_jll 659.8 ms ✓ LAME_jll 664.2 ms ✓ libaom_jll 648.6 ms ✓ LZO_jll 649.9 ms ✓ Opus_jll 649.5 ms ✓ Libmount_jll 654.7 ms ✓ libfdk_aac_jll 654.1 ms ✓ gperf_jll 640.4 ms ✓ libevdev_jll 2140.1 ms ✓ OpenSSL 743.4 ms ✓ Dbus_jll 709.5 ms ✓ FreeType2_jll 722.0 ms ✓ Xorg_xcb_util_jll 749.6 ms ✓ Xorg_libXrender_jll 738.4 ms ✓ Xorg_libXfixes_jll 727.1 ms ✓ Xorg_libxkbfile_jll 728.3 ms ✓ Xorg_libXinerama_jll 3691.4 ms ✓ ColorSchemes 1491.7 ms ✓ UnitfulLatexify 840.3 ms ✓ Latexify → SparseArraysExt 708.1 ms ✓ Xorg_libSM_jll 666.8 ms ✓ Pixman_jll 1031.1 ms ✓ JLFzf 713.3 ms ✓ libvorbis_jll 757.3 ms ✓ Wayland_jll 767.5 ms ✓ Glib_jll 717.0 ms ✓ eudev_jll 14356.5 ms ✓ HTTP 801.0 ms ✓ Fontconfig_jll 738.8 ms ✓ Xorg_xcb_util_keysyms_jll 749.1 ms ✓ Xorg_xcb_util_renderutil_jll 772.3 ms ✓ Xorg_xcb_util_image_jll 732.0 ms ✓ Xorg_xcb_util_wm_jll 730.8 ms ✓ Xorg_libXrandr_jll 733.3 ms ✓ Xorg_libXcursor_jll 725.1 ms ✓ Xorg_libXi_jll 733.0 ms ✓ Xorg_xkbcomp_jll 8934.1 ms ✓ PlotUtils 713.5 ms ✓ libinput_jll 833.7 ms ✓ Cairo_jll 724.1 ms ✓ Xorg_xcb_util_cursor_jll 640.8 ms ✓ Xorg_xkeyboard_config_jll 4240.1 ms ✓ PlotThemes 3829.6 ms ✓ RecipesPipeline 835.4 ms ✓ HarfBuzz_jll 757.2 ms ✓ xkbcommon_jll 822.9 ms ✓ libass_jll 836.5 ms ✓ Pango_jll 766.8 ms ✓ Vulkan_Loader_jll 888.7 ms ✓ FFMPEG_jll 858.1 ms ✓ libdecor_jll 888.6 ms ✓ Qt6Base_jll 805.2 ms ✓ FFMPEG 875.7 ms ✓ GLFW_jll 874.1 ms ✓ Qt6ShaderTools_jll 1033.2 ms ✓ GR_jll 935.5 ms ✓ Qt6Declarative_jll 539.2 ms ✓ Qt6Wayland_jll 3259.6 ms ✓ GR 54458.6 ms ✓ Plots 5857.6 ms ✓ Plots → UnitfulExt 77 dependencies successfully precompiled in 157 seconds. 106 already precompiled. 1 dependency had output during precompilation: ┌ HTTP │ ┌ Info: Ignoring an error that occurred during the precompilation workload │ │ exception = │ │ HTTP.ConnectError for url = `https://localhost:57813`: IOError: connect: connection refused (ECONNREFUSED) │ │ Stacktrace: │ │ [1] getconnection(::Type{Sockets.TCPSocket}, host::SubString{String}, port::SubString{String}; keepalive::Bool, readtimeout::Int64, kw::@Kwargs{require_ssl_verification::Bool, iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.Connections ~/.julia/packages/HTTP/MIUdD/src/Connections.jl:531 │ │ [2] getconnection │ │ @ ~/.julia/packages/HTTP/MIUdD/src/Connections.jl:508 [inlined] │ │ [3] getconnection(::Type{OpenSSL.SSLStream}, host::SubString{String}, port::SubString{String}; kw::@Kwargs{require_ssl_verification::Bool, keepalive::Bool, readtimeout::Int64, iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.Connections ~/.julia/packages/HTTP/MIUdD/src/Connections.jl:585 │ │ [4] getconnection │ │ @ ~/.julia/packages/HTTP/MIUdD/src/Connections.jl:578 [inlined] │ │ [5] #10 │ │ @ ~/.julia/packages/HTTP/MIUdD/src/Connections.jl:467 [inlined] │ │ [6] macro expansion │ │ @ ~/.julia/packages/ConcurrentUtilities/ofY4K/src/try_with_timeout.jl:92 [inlined] │ │ [7] (::ConcurrentUtilities.var"#2#4"{Any, Channel{Any}, HTTP.Connections.var"#10#13"{OpenSSL.SSLStream, Bool, Bool, @Kwargs{readtimeout::Int64, iofunction::Nothing, decompress::Nothing, verbose::Int64}, SubString{String}, SubString{String}}, Timer})() │ │ @ ConcurrentUtilities ~/.julia/packages/ConcurrentUtilities/ofY4K/src/ConcurrentUtilities.jl:10 │ │ Stacktrace: │ │ [1] (::HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}})(req::HTTP.Messages.Request; proxy::Nothing, socket_type::Type, socket_type_tls::Nothing, readtimeout::Int64, connect_timeout::Int64, logerrors::Bool, logtag::Nothing, closeimmediately::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.ConnectionRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/ConnectionRequest.jl:88 │ │ [2] connections │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/ConnectionRequest.jl:60 [inlined] │ │ [3] (::Base.var"#106#108"{Base.var"#106#107#109"{ExponentialBackOff, HTTP.RetryRequest.var"#2#5"{Int64, typeof(HTTP.RetryRequest.FALSE), HTTP.Messages.Request, Base.RefValue{Int64}}, HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(args::HTTP.Messages.Request; kwargs::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ Base ./error.jl:312 │ │ [4] (::HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(req::HTTP.Messages.Request; retry::Bool, retries::Int64, retry_delays::ExponentialBackOff, retry_check::Function, retry_non_idempotent::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.RetryRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/RetryRequest.jl:75 │ │ [5] manageretries │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/RetryRequest.jl:30 [inlined] │ │ [6] (::HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}})(req::HTTP.Messages.Request; cookies::Bool, cookiejar::HTTP.Cookies.CookieJar, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) │ │ @ HTTP.CookieRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/CookieRequest.jl:42 │ │ [7] managecookies │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/CookieRequest.jl:19 [inlined] │ │ [8] (::HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}})(req::HTTP.Messages.Request; iofunction::Nothing, decompress::Nothing, basicauth::Bool, detect_content_type::Bool, canonicalize_headers::Bool, kw::@Kwargs{verbose::Int64}) │ │ @ HTTP.HeadersRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/HeadersRequest.jl:71 │ │ [9] defaultheaders │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/HeadersRequest.jl:14 [inlined] │ │ [10] (::HTTP.RedirectRequest.var"#redirects#3"{HTTP.RedirectRequest.var"#redirects#1#4"{HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}})(req::HTTP.Messages.Request; redirect::Bool, redirect_limit::Int64, redirect_method::Nothing, forwardheaders::Bool, response_stream::Nothing, kw::@Kwargs{verbose::Int64}) │ │ @ HTTP.RedirectRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/RedirectRequest.jl:25 │ │ [11] redirects │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/RedirectRequest.jl:14 [inlined] │ │ [12] (::HTTP.MessageRequest.var"#makerequest#3"{HTTP.MessageRequest.var"#makerequest#1#4"{HTTP.RedirectRequest.var"#redirects#3"{HTTP.RedirectRequest.var"#redirects#1#4"{HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}})(method::String, url::URIs.URI, headers::Nothing, body::Vector{UInt8}; copyheaders::Bool, response_stream::Nothing, http_version::HTTP.Strings.HTTPVersion, verbose::Int64, kw::@Kwargs{}) │ │ @ HTTP.MessageRequest ~/.julia/packages/HTTP/MIUdD/src/clientlayers/MessageRequest.jl:35 │ │ [13] makerequest │ │ @ ~/.julia/packages/HTTP/MIUdD/src/clientlayers/MessageRequest.jl:24 [inlined] │ │ [14] request(stack::HTTP.MessageRequest.var"#makerequest#3"{HTTP.MessageRequest.var"#makerequest#1#4"{HTTP.RedirectRequest.var"#redirects#3"{HTTP.RedirectRequest.var"#redirects#1#4"{HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}}, method::String, url::String, h::Nothing, b::Vector{UInt8}, q::Nothing; headers::Nothing, body::Vector{UInt8}, query::Nothing, kw::@Kwargs{}) │ │ @ HTTP ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:457 │ │ [15] request(stack::Function, method::String, url::String, h::Nothing, b::Vector{UInt8}, q::Nothing) │ │ @ HTTP ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:455 │ │ [16] #request#20 │ │ @ ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:315 [inlined] │ │ [17] request (repeats 2 times) │ │ @ ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:313 [inlined] │ │ [18] get │ │ @ ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:518 [inlined] │ │ [19] #51 │ │ @ ~/.julia/packages/HTTP/MIUdD/src/precompile.jl:36 [inlined] │ │ [20] withenv(::HTTP.var"#51#54"{String}, ::Pair{String, Union{Nothing, String}}, ::Vararg{Pair{String, Union{Nothing, String}}}) │ │ @ Base ./env.jl:265 │ │ [21] macro expansion │ │ @ ~/.julia/packages/HTTP/MIUdD/src/precompile.jl:35 [inlined] │ │ [22] macro expansion │ │ @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] │ │ [23] macro expansion │ │ @ ~/.julia/packages/HTTP/MIUdD/src/precompile.jl:34 [inlined] │ │ [24] macro expansion │ │ @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined] │ │ [25] top-level scope │ │ @ ~/.julia/packages/HTTP/MIUdD/src/precompile.jl:4 │ │ [26] include(mod::Module, _path::String) │ │ @ Base ./Base.jl:557 │ │ [27] include │ │ @ ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:1 [inlined] │ │ [28] top-level scope │ │ @ ~/.julia/packages/HTTP/MIUdD/src/HTTP.jl:643 │ │ [29] include │ │ @ ./Base.jl:557 [inlined] │ │ [30] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ │ @ Base ./loading.jl:2881 │ │ [31] top-level scope │ │ @ stdin:6 │ │ [32] eval │ │ @ ./boot.jl:430 [inlined] │ │ [33] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ │ @ Base ./loading.jl:2734 │ │ [34] include_string │ │ @ ./loading.jl:2744 [inlined] │ │ [35] exec_options(opts::Base.JLOptions) │ │ @ Base ./client.jl:321 │ │ [36] _start() │ └ @ Base ./client.jl:531 └ Precompiling RatiosFixedPointNumbersExt... 480.5 ms ✓ Ratios → RatiosFixedPointNumbersExt 1 dependency successfully precompiled in 1 seconds. 5 already precompiled. Precompiling FileIOExt... 2083.1 ms ✓ FileIO → HTTPExt 5509.4 ms ✓ Plots → FileIOExt 2 dependencies successfully precompiled in 8 seconds. 184 already precompiled. Precompiling Polynomials... 17808.5 ms ✓ Polynomials 1 dependency successfully precompiled in 18 seconds. 19 already precompiled. Precompiling PolynomialsChainRulesCoreExt... 1259.2 ms ✓ Polynomials → PolynomialsChainRulesCoreExt 1 dependency successfully precompiled in 1 seconds. 24 already precompiled. Precompiling PDFmerger... 950.4 ms ✓ Poppler_jll 844.3 ms ✓ PDFmerger 2 dependencies successfully precompiled in 2 seconds. 59 already precompiled. Precompiling StatsPlots... 739.0 ms ✓ TableOperations 913.9 ms ✓ Widgets 553.6 ms ✓ Distances → DistancesChainRulesCoreExt 671.2 ms ✓ Arpack_jll 660.6 ms ✓ FFTW_jll 2047.6 ms ✓ NearestNeighbors 1285.0 ms ✓ HypergeometricFunctions 1495.9 ms ✓ Interpolations → InterpolationsUnitfulExt 740.7 ms ✓ Arpack 3228.5 ms ✓ FFTW 2087.7 ms ✓ Clustering 1702.6 ms ✓ StatsFuns 2151.8 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 6093.8 ms ✓ Distributions 1991.4 ms ✓ Distributions → DistributionsTestExt 2079.0 ms ✓ Distributions → DistributionsChainRulesCoreExt 2369.0 ms ✓ MultivariateStats 3287.1 ms ✓ KernelDensity 9686.2 ms ✓ StatsPlots 19 dependencies successfully precompiled in 45 seconds. 230 already precompiled. Precompiling StatsFunsInverseFunctionsExt... 893.8 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 1 dependency successfully precompiled in 1 seconds. 21 already precompiled. Precompiling PolynomialsFFTWExt... 1370.1 ms ✓ Polynomials → PolynomialsFFTWExt 1 dependency successfully precompiled in 2 seconds. 47 already precompiled. Precompiling XGBoost... 692.1 ms ✓ SparseMatricesCSR 781.8 ms ✓ CUDA_Driver_jll 1780.5 ms ✓ CUDA_Runtime_jll 1789.6 ms ✓ XGBoost_jll 2634.2 ms ✓ XGBoost 5 dependencies successfully precompiled in 8 seconds. 47 already precompiled. Precompiling CategoricalArraysStructTypesExt... 597.2 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 1 dependency successfully precompiled in 1 seconds. 14 already precompiled. Precompiling JSON3ArrowExt... 675.0 ms ✓ JSON3 → JSON3ArrowExt 1 dependency successfully precompiled in 1 seconds. 12 already precompiled. Precompiling FastGaussQuadrature... 2126.5 ms ✓ FastGaussQuadrature 1 dependency successfully precompiled in 2 seconds. 16 already precompiled. WARNING: Method definition load_detailed_frags(String) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/structs/LibraryIon.jl:197 overwritten at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/structs/LibraryIon.jl:308. WARNING: Method definition getKnots(Main.SplineFragmentLookup{N, M, T} where T<:AbstractFloat where M where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/structs/LibraryIon.jl:566 overwritten at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/structs/LibraryIon.jl:604. WARNING: Method definition getProteomeIdentifiers(Main.LibraryPrecursors) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/structs/LibraryIon.jl:750 overwritten at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/structs/LibraryIon.jl:751. WARNING: Method definition getSequence(Main.LibraryPrecursors) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/structs/LibraryIon.jl:753 overwritten at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/structs/LibraryIon.jl:754. WARNING: Method definition fit_nce_model(Main.PiecewiseNceModel{T}, AbstractArray{T, 1} where T, AbstractArray{T, 1} where T, AbstractArray{T, 1} where T, Real) where {T<:AbstractFloat} in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/utils/ML/piecewiseLinearFunction.jl:49 overwritten at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/utils/ML/piecewiseLinearFunction.jl:144. WARNING: Method definition (::Type{Main.StandardTransitionSelection})() in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:3 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.MassErrEstimationStrategy})() in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:4 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.RTIndexedTransitionSelection})() in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:5 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.QuadEstimationTransitionSelection})() in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:6 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.PartialPrecCapture})() in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:21 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.FullPrecCapture})() in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:30 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition ensureTransitionCapacity!(Array{Main.DetailedFrag{Float32}, 1}, Int64, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:34 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPrecursorProperties(UInt32, AbstractArray{Float32, N} where N, AbstractArray{UInt8, N} where N, AbstractArray{UInt8, N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:44 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition selectTransitions!(Array{Main.DetailedFrag{Float32}, 1}, Main.TransitionSelectionStrategy, Main.PrecEstimation, Any...) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:59 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Main.selectTransitions!), Array{Main.DetailedFrag{Float32}, 1}, Main.TransitionSelectionStrategy, Main.PrecEstimation, Any...) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/CommonSearchUtils/selectTransitions/selectTransitions.jl:59 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.PioneerParameters})(NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/ParseInputs/parseParams.jl:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.PioneerParameters})(Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/ParseInputs/parseParams.jl:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition merge_with_globals(NamedTuple{names, T} where T<:Tuple where names, NamedTuple{names, T} where T<:Tuple where names) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/ParseInputs/parseParams.jl:16 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition parse_pioneer_parameters(String) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/ParseInputs/parseParams.jl:28 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.ArrowTableReference{N} where N})(Array{String, 1}) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:82 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.ArrowTableReference{N} where N})(String) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:105 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.SimpleLibrarySearch{I<:(Main.IsotopeSplineModel{N, T} where T<:Real where N)}})(Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:133 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.SimpleLibrarySearch{I} where I<:(Main.IsotopeSplineModel{N, T} where T<:Real where N)})(Array{Main.FragmentMatch{Float32}, 1}, Array{Main.FragmentMatch{Float32}, 1}, Array{Main.FragmentMatch{Float32}, 1}, Main.ArrayDict{UInt32, UInt16}, Main.Counter{UInt32, UInt8}, Array{Main.DetailedFrag{Float32}, 1}, I, Array{Main.SimpleScoredPSM{Float32, Float16}, 1}, Array{Main.SimpleUnscoredPSM{Float32}, 1}, Array{Main.SpectralScoresSimple{Float16}, 1}, Array{Main.ComplexScoredPSM{Float32, Float16}, 1}, Array{Main.ComplexUnscoredPSM{Float32}, 1}, Array{Main.SpectralScoresComplex{Float16}, 1}, Array{Main.Ms1ScoredPSM{Float32, Float16}, 1}, Array{Main.Ms1UnscoredPSM{Float32}, 1}, Array{Main.SpectralScoresMs1{Float16}, 1}, Main.SparseArray{Ti, T} where T<:AbstractFloat where Ti<:Integer, Array{UInt32, 1}, Array{Float32, 1}, Array{Float32, 1}, Array{Float32, 1}, Array{Float32, 1}, Array{Float32, 1}) where {I<:(Main.IsotopeSplineModel{N, T} where T<:Real where N)} in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:133 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N})(L, AbstractArray{var"#s23", 1} where var"#s23"<:Main.SearchDataStructures, M, Int64, Int64, Int64) where {L<:Main.SpectralLibrary, M<:Main.MassSpecDataReference} in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:205 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMSData(Main.MassSpecDataReference, I) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:237 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMSData(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:238 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getParsedFileName(Main.ArrowTableReference{N} where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:239 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition enumerate(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:242 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getFileIdToName(Main.ArrowTableReference{N} where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:247 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getFirstPassPsms(Main.ArrowTableReference{N} where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:248 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSecondPassPsms(Main.ArrowTableReference{N} where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:249 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPassingPsms(Main.ArrowTableReference{N} where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:250 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPassingProteins(Main.ArrowTableReference{N} where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:251 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getRtIndex(Main.ArrowTableReference{N} where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:252 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getFailedIndicator(Main.ArrowTableReference{N} where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:253 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getParsedFileNames(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:254 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getFilePaths(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:256 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getFileIdToName(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:258 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getFirstPassPsms(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:259 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSecondPassPsms(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:260 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPassingPsms(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:261 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPassingProteins(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:262 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getRtIndex(Main.ArrowTableReference{N} where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:263 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setFileIdToName!(Main.ArrowTableReference{N} where N, Int64, String) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:267 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setFirstPassPsms!(Main.ArrowTableReference{N} where N, Int64, String) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:268 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setSecondPassPsms!(Main.ArrowTableReference{N} where N, Int64, String) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:269 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setPassingPsms!(Main.ArrowTableReference{N} where N, Int64, String) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:270 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setPassingProteins!(Main.ArrowTableReference{N} where N, Int64, String) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:271 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setRtIndex!(Main.ArrowTableReference{N} where N, Int64, String) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:272 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setFailedIndicator!(Main.ArrowTableReference{N} where N, Int64, Bool) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:273 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getFragErrQuantile(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:276 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getFragTolPpm(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:277 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIRTTol(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:278 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIsotopeErrBounds(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:279 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMinFractionTransmitted(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:280 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMaxBestRank(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:281 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMaxFragRank(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:282 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMaxPresearchIters(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:283 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMaxQVal(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:284 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMinFragCount(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:285 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMinIndexSearchScore(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:286 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMinLog2MatchedRatio(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:287 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMinPsms(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:288 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMinSpectralContrast(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:289 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMinTopNofM(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:290 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getNFragIsotopes(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:291 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getOutlierThreshold(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:292 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPrecEstimation(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:293 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSampleRate(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:294 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSpecOrder(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:295 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSplineDegree(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:296 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSplineNKnots(Main.SearchParameters) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:297 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIonMatches(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:302 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIonMisses(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:303 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMassErrMatches(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:304 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIdToCol(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:305 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPrecursorScores(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:306 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIonTemplates(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:307 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIsoSplines(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:308 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getScoredPsms(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:310 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getUnscoredPsms(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:311 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSpectralScores(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:312 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getComplexScoredPsms(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:314 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getComplexUnscoredPsms(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:315 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getComplexSpectralScores(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:316 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMs1ScoredPsms(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:318 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMs1UnscoredPsms(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:319 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMs1SpectralScores(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:320 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getHs(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:323 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPrecIds(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:324 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getWeights(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:325 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getResiduals(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:326 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIsotopes(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:327 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPrecursorTransmission(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:328 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getTuningResults(Main.SearchDataStructures) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:329 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getTempWeights(Main.SimpleLibrarySearch{I} where I<:(Main.IsotopeSplineModel{N, T} where T<:Real where N)) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:330 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPrecursorWeights(Main.SimpleLibrarySearch{I} where I<:(Main.IsotopeSplineModel{N, T} where T<:Real where N)) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:331 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getNThreads(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:339 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getNPrecursors(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:340 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getBufferSize(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:341 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMassSpecData(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:342 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSpecLib(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:343 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getSearchData(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:344 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getDataOutDir(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:345 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getQcPlotfolder(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:346 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getRtAlignPlotFolder(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:347 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMassErrPlotFolder(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:348 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMs1MassErrPlotFolder(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:349 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getParsedFileName(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:350 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIrtRtMap(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:351 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getRtIrtMap(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:352 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPrecursorDict(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:353 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getRtIndexPaths(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:354 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getIrtErrors(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:355 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPredIrt(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:356 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPredIrt(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, Int64) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:357 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPredIrt(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, UInt32) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:358 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getHuberDelta(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:359 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setPredIrt!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, Int64, Float32) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:360 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setPredIrt!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, UInt32, Float32) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:361 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getQuadTransmissionModel(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, I) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:367 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setQuadTransmissionModel!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, I, Main.QuadTransmissionModel) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:377 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMassErrorModel(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, I) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:384 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setMassErrorModel!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, I, Main.MassErrorModel{T} where T<:AbstractFloat) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:392 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getMs1MassErrorModel(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, I) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:399 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setMs1MassErrorModel!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, I, Main.MassErrorModel{T} where T<:AbstractFloat) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:409 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getRtIrtModel(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, I) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:416 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getRtIrtModel(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:429 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getNceModelModel(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, I) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:438 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setNceModel!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, I, Main.NceModel{T} where T<:AbstractFloat) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:447 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setIrtRtMap!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, Main.RtConversionModel, I) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:448 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setRtIrtMap!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, Main.RtConversionModel, I) where {I<:Integer} in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:451 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setPrecursorDict!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, Dictionaries.Dictionary{UInt32, NamedTuple{(:best_prob, :best_ms_file_idx, :best_scan_idx, :best_irt, :mean_irt, :var_irt, :n, :mz), Tuple{Float32, UInt32, UInt32, Float32, Union{Base.Missing, Float32}, Union{Base.Missing, Float32}, Union{Base.Missing, UInt16}, Float32}}}) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:454 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setRtIndexPaths!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, Array{String, 1}) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:457 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setHuberDelta!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, Float32) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:458 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition setIrtErrors!(Main.SearchContext{N, L, M} where M<:Main.MassSpecDataReference where L<:Main.SpectralLibrary where N, Dictionaries.Dictionary{Int64, Float32}) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/SearchTypes.jl:459 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition collectFragErrs(Array{M, 1}, Array{M, 1}, Int64, Int64) where {M<:Main.MatchIon{Float32}} in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/SearchMethods/ParameterTuningSearch/utils.jl:360 overwritten at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/LibrarySearch.jl:429. WARNING: Method definition importScripts() in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/importScripts.jl:1 overwritten at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/BuildSpecLib/importScripts.jl:1. WARNING: Method definition (::Type{Main.PeptideMod})(UInt8, Char, String) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/BuildSpecLib/structs/mods.jl:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition (::Type{Main.PeptideMod})(Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/BuildSpecLib/structs/mods.jl:2 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getPosition(Main.PeptideMod) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/BuildSpecLib/structs/mods.jl:7 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getAA(Main.PeptideMod) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/BuildSpecLib/structs/mods.jl:8 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getModName(Main.PeptideMod) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/BuildSpecLib/structs/mods.jl:9 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getModString(Main.PeptideMod) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/BuildSpecLib/structs/mods.jl:10 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getModString(Array{Main.PeptideMod, 1}) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/BuildSpecLib/structs/mods.jl:11 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition getModString(Base.Missing) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/BuildSpecLib/structs/mods.jl:12 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition isless(Main.PeptideMod, Main.PeptideMod) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/BuildSpecLib/structs/mods.jl:17 overwritten on the same line (check for duplicate calls to `include`). WARNING: Method definition sort_fragments!(DataFrames.DataFrame) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/BuildSpecLib/fragments/fragment_predict.jl:246 overwritten at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/BuildSpecLib/fragments/fragment_predict.jl:250. WARNING: Method definition parseMods(AbstractString) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/WriteOutputs/writeCSVTables.jl:1 overwritten at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/BuildSpecLib/utils/get_mz.jl:73. WARNING: Method definition (::Type{Main.InvalidParametersError})(String, Base.Dict{String, Any}) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/ParseInputs/paramsChecks.jl:4 overwritten at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/BuildSpecLib/utils/check_params.jl:2. WARNING: Method definition (::Type{Main.InvalidParametersError})(Any, Any) in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/SearchDIA/ParseInputs/paramsChecks.jl:4 overwritten at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/Routines/BuildSpecLib/utils/check_params.jl:2. WARNING: Method definition peak_rss() in module Main at /home/pkgeval/.julia/packages/Pioneer/nAsPW/src/utils/profile.jl:11 overwritten on the same line (check for duplicate calls to `include`). dir /home/pkgeval/.julia/packages/Pioneer/nAsPW/test 0.0%┣ ┫ 0/120 [00:00<00:-1, -0s/it]  0.8%┣▍ ┫ 1/120 [00:01