Package evaluation of PhyloClustering on Julia 1.13.0-DEV.427 (855bef3b06*) started at 2025-04-24T07:25:53.126 ################################################################################ # Set-up # Set-up completed after 0.26s ################################################################################ # Installation # Installing PhyloClustering... Resolving package versions... Installed JpegTurbo_jll ─────────────── v3.1.1+0 Installed ScikitLearnBase ───────────── v0.5.0 Installed ImageIO ───────────────────── v0.6.9 Installed x265_jll ──────────────────── v4.1.0+0 Installed BioGenerics ───────────────── v0.1.5 Installed AxisArrays ────────────────── v0.4.7 Installed PhyloClustering ───────────── v0.2.0 Installed TiffImages ────────────────── v0.11.3 Installed libfdk_aac_jll ────────────── v2.0.3+0 Installed Libmount_jll ──────────────── v2.41.0+0 Installed HypergeometricFunctions ───── v0.3.28 Installed OffsetArrays ──────────────── v1.17.0 Installed JpegTurbo ─────────────────── v0.1.6 Installed PNGFiles ──────────────────── v0.4.4 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Preferences ───────────────── v1.4.3 Installed StatisticalTraits ─────────── v3.4.0 Installed StatsFuns ─────────────────── v1.4.0 Installed FFTW ──────────────────────── v1.8.1 Installed Opus_jll ──────────────────── v1.3.3+0 Installed Permutations ──────────────── v0.4.23 Installed Multisets ─────────────────── v0.4.5 Installed RelocatableFolders ────────── v1.0.1 Installed Sixel ─────────────────────── v0.1.3 Installed PDMats ────────────────────── v0.11.34 Installed EarCut_jll ────────────────── v2.2.4+0 Installed StableHashTraits ──────────── v1.3.4 Installed InlineStrings ─────────────── v1.4.3 Installed Contour ───────────────────── v0.6.3 Installed ProgressMeter ─────────────── v1.10.4 Installed ParallelKMeans ────────────── v1.1.0 Installed StaticArrays ──────────────── v1.9.13 Installed Grisu ─────────────────────── v1.0.2 Installed OpenEXR ───────────────────── v0.3.3 Installed Formatting ────────────────── v0.4.3 Installed NearestNeighbors ──────────── v0.4.21 Installed PlotUtils ─────────────────── v1.4.3 Installed EnumX ─────────────────────── v1.0.5 Installed CEnum ─────────────────────── v0.5.0 Installed DelimitedFiles ────────────── v1.9.1 Installed BioSequences ──────────────── v3.4.1 Installed InvertedIndices ───────────── v1.3.1 Installed Cairo_jll ─────────────────── v1.18.4+0 Installed Fontconfig_jll ────────────── v2.16.0+0 Installed FileIO ────────────────────── v1.17.0 Installed Statistics ────────────────── v1.11.1 Installed IntelOpenMP_jll ───────────── v2025.0.4+0 Installed GLM ───────────────────────── v1.9.0 Installed DataFrames ────────────────── v1.7.0 Installed Netpbm ────────────────────── v1.1.1 Installed Mods ──────────────────────── v2.2.6 Installed Polynomials ───────────────── v4.0.19 Installed SignedDistanceFields ──────── v0.4.0 Installed FilePaths ─────────────────── v0.8.3 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed Distances ─────────────────── v0.10.12 Installed RoundingEmulator ──────────── v0.2.1 Installed TupleTools ────────────────── v1.6.0 Installed Missings ──────────────────── v1.2.0 Installed TriplotBase ───────────────── v0.1.0 Installed FiniteDiff ────────────────── v2.27.0 Installed IrrationalConstants ───────── v0.2.4 Installed SIMD ──────────────────────── v3.7.1 Installed Showoff ───────────────────── v1.0.3 Installed JLD2 ──────────────────────── v0.4.54 Installed Giflib_jll ────────────────── v5.2.3+0 Installed Functors ──────────────────── v0.4.12 Installed AbstractLattices ──────────── v0.3.1 Installed JSON ──────────────────────── v0.21.4 Installed Pango_jll ─────────────────── v1.56.1+0 Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0 Installed NLopt ─────────────────────── v1.1.3 Installed SimpleRandom ──────────────── v0.3.2 Installed PolygonOps ────────────────── v0.1.2 Installed PtrArrays ─────────────────── v1.3.0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed ADTypes ───────────────────── v1.14.0 Installed MathTeXEngine ─────────────── v0.5.7 Installed QOI ───────────────────────── v1.0.1 Installed SpecialFunctions ──────────── v2.5.1 Installed Clustering ────────────────── v0.15.8 Installed XZ_jll ────────────────────── v5.8.1+0 Installed SentinelArrays ────────────── v1.4.8 Installed HarfBuzz_jll ──────────────── v8.5.0+0 Installed isoband_jll ───────────────── v0.2.3+0 Installed PkgVersion ────────────────── v0.3.3 Installed BioSymbols ────────────────── v5.1.3 Installed StaticArraysCore ──────────── v1.4.3 Installed NaNMath ───────────────────── v1.1.3 Installed PikaParser ────────────────── v0.6.1 Installed LZO_jll ───────────────────── v2.10.3+0 Installed WorkerUtilities ───────────── v1.6.1 Installed StringViews ───────────────── v1.3.4 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed WebP ──────────────────────── v0.1.3 Installed UnicodeFun ────────────────── v0.4.1 Installed NLSolversBase ─────────────── v7.9.1 Installed TranscodingStreams ────────── v0.11.3 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed UnsafeArrays ──────────────── v1.0.7 Installed Graphics ──────────────────── v1.1.3 Installed ImageMetadata ─────────────── v0.9.10 Installed Ratios ────────────────────── v0.4.5 Installed StatsModels ───────────────── v0.7.4 Installed WeakRefStrings ────────────── v1.4.2 Installed x264_jll ──────────────────── v10164.0.1+0 Installed CommonSubexpressions ──────── v0.3.1 Installed MappedArrays ──────────────── v0.4.2 Installed FreeType ──────────────────── v4.1.1 Installed DataStructures ────────────── v0.18.22 Installed Colors ────────────────────── v0.12.11 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed ColorSchemes ──────────────── v3.29.0 Installed PaddedViews ───────────────── v0.5.12 Installed StatsAPI ──────────────────── v1.7.0 Installed SimpleGraphs ──────────────── v0.8.6 Installed Compat ────────────────────── v4.16.0 Installed GridLayoutBase ────────────── v0.10.2 Installed CodecZlib ─────────────────── v0.7.8 Installed LazyModules ───────────────── v0.3.1 Installed Automa ────────────────────── v1.1.0 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed libpng_jll ────────────────── v1.6.47+0 Installed MosaicViews ───────────────── v0.3.4 Installed StatsBase ─────────────────── v0.33.21 Installed StructTypes ───────────────── v1.11.0 Installed libaom_jll ────────────────── v3.11.0+0 Installed LinearAlgebraX ────────────── v0.2.10 Installed Scratch ───────────────────── v1.2.1 Installed ColorTypes ────────────────── v0.11.5 Installed ImageCore ─────────────────── v0.10.5 Installed DiffRules ─────────────────── v1.15.1 Installed oneTBB_jll ────────────────── v2022.0.0+0 Installed Twiddle ───────────────────── v1.1.2 Installed SimplePartitions ──────────── v0.3.3 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed Zstd_jll ──────────────────── v1.5.7+1 Installed TensorCore ────────────────── v0.1.1 Installed TableTraits ───────────────── v1.0.1 Installed Isoband ───────────────────── v0.1.1 Installed FreeTypeAbstraction ───────── v0.10.6 Installed Expat_jll ─────────────────── v2.6.5+0 Installed DiffResults ───────────────── v1.1.0 Installed Inflate ───────────────────── v0.1.5 Installed WeakKeyIdDicts ────────────── v0.1.0 Installed PositiveFactorizations ────── v0.2.4 Installed PrettyTables ──────────────── v2.4.0 Installed Imath_jll ─────────────────── v3.1.11+0 Installed Extents ───────────────────── v0.1.5 Installed Parsers ───────────────────── v2.8.2 Installed MKL_jll ───────────────────── v2025.0.1+1 Installed PooledArrays ──────────────── v1.4.3 Installed Setfield ──────────────────── v1.1.2 Installed Libtiff_jll ───────────────── v4.7.1+0 Installed JLLWrappers ───────────────── v1.7.0 Installed Format ────────────────────── v1.3.7 Installed AbstractFFTs ──────────────── v1.5.0 Installed Packing ───────────────────── v0.5.1 Installed ConstructionBase ──────────── v1.5.8 Installed Libffi_jll ────────────────── v3.2.2+2 Installed DataValueInterfaces ───────── v1.0.0 Installed ColorVectorSpace ──────────── v0.10.0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed OrderedCollections ────────── v1.8.0 Installed AbstractTrees ─────────────── v0.4.5 Installed ExactPredicates ───────────── v2.2.8 Installed Ogg_jll ───────────────────── v1.3.5+1 Installed KernelDensity ─────────────── v0.6.9 Installed Combinatorics ─────────────── v1.0.2 Installed ChainRulesCore ────────────── v1.25.1 Installed Reexport ──────────────────── v1.2.2 Installed ArrayInterface ────────────── v7.18.0 Installed LineSearches ──────────────── v7.3.0 Installed LogExpFunctions ───────────── v0.3.29 Installed Animations ────────────────── v0.4.2 Installed Interpolations ────────────── v0.15.1 Installed StackViews ────────────────── v0.1.1 Installed AliasTables ───────────────── v1.1.3 Installed RingLists ─────────────────── v0.2.9 Installed RangeArrays ───────────────── v0.3.2 Installed IntervalArithmetic ────────── v0.22.29 Installed MacroTools ────────────────── v0.5.16 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed UnPack ────────────────────── v1.0.2 Installed GeoFormatTypes ────────────── v0.4.4 Installed Libuuid_jll ───────────────── v2.41.0+0 Installed SimpleTraits ──────────────── v0.9.4 Installed ColorBrewer ───────────────── v0.4.1 Installed MultivariateStats ─────────── v0.10.3 Installed FASTX ─────────────────────── v2.1.7 Installed OpenEXR_jll ───────────────── v3.2.4+0 Installed ScientificTypesBase ───────── v3.0.0 Installed DocStringExtensions ───────── v0.9.4 Installed Crayons ───────────────────── v4.1.1 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed StableRNGs ────────────────── v1.0.2 Installed Adapt ─────────────────────── v4.3.0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed libass_jll ────────────────── v0.15.2+0 Installed DifferentiationInterface ──── v0.6.52 Installed XML2_jll ──────────────────── v2.13.6+1 Installed Rmath ─────────────────────── v0.8.0 Installed IntegerMathUtils ──────────── v0.1.2 Installed ImageBase ─────────────────── v0.1.7 Installed IntervalSets ──────────────── v0.7.10 Installed MLJModelInterface ─────────── v1.11.1 Installed Gettext_jll ───────────────── v0.21.0+0 Installed Arpack_jll ────────────────── v3.5.1+1 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed IndirectArrays ────────────── v1.0.0 Installed FFMPEG_jll ────────────────── v7.1.0+0 Installed IterTools ─────────────────── v1.10.0 Installed GeometryBasics ────────────── v0.4.11 Installed MakieCore ─────────────────── v0.7.3 Installed DataAPI ───────────────────── v1.16.0 Installed Cairo ─────────────────────── v1.1.1 Installed Tables ────────────────────── v1.12.0 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed CairoMakie ────────────────── v0.11.9 Installed FixedPointNumbers ─────────── v0.8.5 Installed ShaderAbstractions ────────── v0.4.1 Installed Primes ────────────────────── v0.5.7 Installed Optim ─────────────────────── v1.12.0 Installed RecipesBase ───────────────── v1.3.4 Installed LAME_jll ──────────────────── v3.100.2+0 Installed PrecompileTools ───────────── v1.3.2 Installed DelaunayTriangulation ─────── v0.8.12 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed StructArrays ──────────────── v0.6.21 Installed LaTeXStrings ──────────────── v1.4.0 Installed Glib_jll ──────────────────── v2.82.4+0 Installed Arpack ────────────────────── v0.5.4 Installed libvorbis_jll ─────────────── v1.3.7+2 Installed libsixel_jll ──────────────── v1.10.5+0 Installed CSV ───────────────────────── v0.10.15 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed FilePathsBase ─────────────── v0.9.24 Installed ForwardDiff ───────────────── v1.0.1 Installed FillArrays ────────────────── v1.13.0 Installed AxisAlgorithms ────────────── v1.1.0 Installed PhyloNetworks ─────────────── v0.16.4 Installed ImageAxes ─────────────────── v0.6.12 Installed QuadGK ────────────────────── v2.11.2 Installed ShiftedArrays ─────────────── v2.0.0 Installed Requires ──────────────────── v1.3.1 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed Observables ───────────────── v0.5.5 Installed CRlibm_jll ────────────────── v1.0.1+0 Installed Parameters ────────────────── v0.12.3 Installed LightXML ──────────────────── v0.9.1 Installed GeoInterface ──────────────── v1.4.1 Installed WoodburyMatrices ──────────── v1.0.0 Installed GaussianMixtures ──────────── v0.3.12 Installed Distributions ─────────────── v0.25.119 Installed SimplePolynomials ─────────── v0.2.18 Installed StringManipulation ────────── v0.4.1 Installed SortingAlgorithms ─────────── v1.2.1 Installed libwebp_jll ───────────────── v1.5.0+0 Installed Makie ─────────────────────── v0.20.8 Installing 58 artifacts Installed artifact Arpack 147.2 KiB Installed artifact Rmath 121.9 KiB Installed artifact oneTBB 435.6 KiB Installed artifact Zstd 646.0 KiB Installed artifact Expat 271.4 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact NLopt 322.7 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact x264 2.1 MiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Libmount 6.4 MiB Installed artifact XML2 2.5 MiB Installed artifact Libiconv 1.9 MiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact libass 372.4 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact LAME 292.5 KiB Installed artifact libvorbis 271.0 KiB Installed artifact OpenEXR 1.9 MiB Installed artifact FFTW 2.2 MiB Installed artifact XZ 1.5 MiB Installed artifact Imath 182.8 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Libtiff 3.2 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Libffi 34.1 KiB Installed artifact EarCut 80.5 KiB Installed artifact isoband 25.7 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Giflib 154.6 KiB Installed artifact libpng 328.5 KiB Installed artifact Gettext 4.5 MiB Installed artifact FFMPEG 11.4 MiB Installed artifact Libuuid 3.5 MiB Installed artifact libsixel 177.3 KiB Installed artifact Ogg 257.2 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Opus 908.1 KiB Installed artifact CRlibm 169.5 KiB Installed artifact Cairo 2.2 MiB Installed artifact FriBidi 78.9 KiB Installed artifact x265 1.4 MiB Installed artifact Pixman 372.2 KiB Installed artifact Bzip2 503.5 KiB Installed artifact libaom 6.4 MiB Installed artifact Pango 1.1 MiB Installed artifact libwebp 2.6 MiB Installed artifact Fontconfig 522.5 KiB Installed artifact Glib 7.6 MiB Installed artifact libfdk_aac 2.8 MiB Installed artifact LERC 272.9 KiB Installed artifact FreeType2 1.5 MiB Installed artifact LZO 208.9 KiB Installed artifact JpegTurbo 1.6 MiB Installed artifact OpenBLASConsistentFPCSR 9.9 MiB Updating `~/.julia/environments/v1.13/Project.toml` [2e4ec7c6] + PhyloClustering v0.2.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [621f4979] + AbstractFFTs v1.5.0 [398f06c4] + AbstractLattices v0.3.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.18.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.4.1 [3c28c6f8] + BioSymbols v5.1.3 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [159f3aea] + Cairo v1.1.1 ⌅ [13f3f980] + CairoMakie v0.11.9 [d360d2e6] + ChainRulesCore v1.25.1 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.1 [35d6a980] + ColorSchemes v3.29.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.2 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌅ [927a84f5] + DelaunayTriangulation v0.8.12 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.52 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.119 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.8 [411431e0] + Extents v0.1.5 [c2308a5c] + FASTX v2.1.7 [7a1cc6ca] + FFTW v1.8.1 [5789e2e9] + FileIO v1.17.0 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [59287772] + Formatting v0.4.3 [f6369f11] + ForwardDiff v1.0.1 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.6 ⌅ [d9f16b24] + Functors v0.4.12 [38e38edf] + GLM v1.9.0 [cc18c42c] + GaussianMixtures v0.3.12 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 ⌅ [5c1252a2] + GeometryBasics v0.4.11 [a2bd30eb] + Graphics v1.1.3 ⌅ [3955a311] + GridLayoutBase v0.10.2 [42e2da0e] + Grisu v1.0.2 [34004b35] + HypergeometricFunctions v0.3.28 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.3 [18e54dd8] + IntegerMathUtils v0.1.2 [a98d9a8b] + Interpolations v0.15.1 [d1acc4aa] + IntervalArithmetic v0.22.29 [8197267c] + IntervalSets v0.7.10 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b835a17e] + JpegTurbo v0.1.6 [5ab0869b] + KernelDensity v0.6.9 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.1 [d3d80556] + LineSearches v7.3.0 [9b3f67b0] + LinearAlgebraX v0.2.10 [2ab3a3ac] + LogExpFunctions v0.3.29 [e80e1ace] + MLJModelInterface v1.11.1 [1914dd2f] + MacroTools v0.5.16 ⌅ [ee78f7c6] + Makie v0.20.8 ⌅ [20f20a25] + MakieCore v0.7.3 [dbb5928d] + MappedArrays v0.4.2 ⌅ [0a4f8689] + MathTeXEngine v0.5.7 [e1d29d7a] + Missings v1.2.0 [7475f97c] + Mods v2.2.6 [e94cdb99] + MosaicViews v0.3.4 [3b2b4ff1] + Multisets v0.4.5 [6f286f6a] + MultivariateStats v0.10.3 [d41bc354] + NLSolversBase v7.9.1 [76087f3c] + NLopt v1.1.3 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.21 [f09324ee] + Netpbm v1.1.1 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.34 [f57f5aa1] + PNGFiles v0.4.4 [19eb6ba3] + Packing v0.5.1 [5432bcbf] + PaddedViews v0.5.12 [42b8e9d4] + ParallelKMeans v1.1.0 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.2 [2ae35dd2] + Permutations v0.4.23 [2e4ec7c6] + PhyloClustering v0.2.0 ⌅ [33ad39ac] + PhyloNetworks v0.16.4 [3bbf5609] + PikaParser v0.6.1 [eebad327] + PkgVersion v0.3.3 [995b91a9] + PlotUtils v1.4.3 [647866c9] + PolygonOps v0.1.2 [f27b6e38] + Polynomials v4.0.19 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [1fd47b50] + QuadGK v2.11.2 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [286e9d63] + RingLists v0.2.9 [79098fc4] + Rmath v0.8.0 [5eaf0fd0] + RoundingEmulator v0.2.1 [fdea26ae] + SIMD v3.7.1 [30f210dd] + ScientificTypesBase v3.0.0 [6e75b9c4] + ScikitLearnBase v0.5.0 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 ⌅ [65257c39] + ShaderAbstractions v0.4.1 [1277b4bf] + ShiftedArrays v2.0.0 [992d4aef] + Showoff v1.0.3 [73760f76] + SignedDistanceFields v0.4.0 [55797a34] + SimpleGraphs v0.8.6 [ec83eff0] + SimplePartitions v0.3.3 [cc47b68c] + SimplePolynomials v0.2.18 [a6525b86] + SimpleRandom v0.3.2 [699a6c99] + SimpleTraits v0.9.4 [45858cf5] + Sixel v0.1.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 ⌅ [c5dd0088] + StableHashTraits v1.3.4 [860ef19b] + StableRNGs v1.0.2 [cae243ae] + StackViews v0.1.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [64bff920] + StatisticalTraits v3.4.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.4.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.4 ⌅ [09ab397b] + StructArrays v0.6.21 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.3 [3bb67fe8] + TranscodingStreams v0.11.3 [981d1d27] + TriplotBase v0.1.0 [9d95972d] + TupleTools v1.6.0 [7200193e] + Twiddle v1.1.2 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [c4a57d5a] + UnsafeArrays v1.0.7 [ecbed89c] + WeakKeyIdDicts v0.1.0 [ea10d353] + WeakRefStrings v1.4.2 [e3aaa7dc] + WebP v0.1.3 [efce3f68] + WoodburyMatrices v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [68821587] + Arpack_jll v3.5.1+1 [6e34b625] + Bzip2_jll v1.0.9+0 [4e9b3aee] + CRlibm_jll v1.0.1+0 ⌃ [83423d85] + Cairo_jll v1.18.4+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.6.5+0 [b22a6f82] + FFMPEG_jll v7.1.0+0 [f5851436] + FFTW_jll v3.3.11+0 [a3f928ae] + Fontconfig_jll v2.16.0+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [78b55507] + Gettext_jll v0.21.0+0 [59f7168a] + Giflib_jll v5.2.3+0 ⌃ [7746bdde] + Glib_jll v2.82.4+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.0+0 [905a6f67] + Imath_jll v3.1.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [aacddb02] + JpegTurbo_jll v3.1.1+0 [c1c5ebd0] + LAME_jll v3.100.2+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 ⌅ [e9f186c6] + Libffi_jll v3.2.2+2 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.0+0 [89763e89] + Libtiff_jll v4.7.1+0 [38a345b3] + Libuuid_jll v2.41.0+0 [856f044c] + MKL_jll v2025.0.1+1 [079eb43e] + NLopt_jll v2.10.0+0 [e7412a2a] + Ogg_jll v1.3.5+1 [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] + OpenEXR_jll v3.2.4+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.3.3+0 [36c8627f] + Pango_jll v1.56.1+0 [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.8.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 [9a68df92] + isoband_jll v0.2.3+0 [a4ae2306] + libaom_jll v3.11.0+0 [0ac62f75] + libass_jll v0.15.2+0 [f638f0a6] + libfdk_aac_jll v2.0.3+0 [b53b4c65] + libpng_jll v1.6.47+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.7+2 [c5f90fcd] + libwebp_jll v1.5.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [8bf52ea8] + CRC32c v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 43.1s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 2351.1 ms ✓ Combinatorics 864.7 ms ✓ RangeArrays 1116.6 ms ✓ StringViews 831.4 ms ✓ ScientificTypesBase 1175.4 ms ✓ AbstractFFTs 856.4 ms ✓ LaTeXStrings 1059.2 ms ✓ PositiveFactorizations 877.9 ms ✓ IndirectArrays 1019.4 ms ✓ PolygonOps 745.9 ms ✓ IteratorInterfaceExtensions 964.7 ms ✓ TensorCore 934.8 ms ✓ GeoFormatTypes 977.1 ms ✓ WorkerUtilities 1211.1 ms ✓ StatsAPI 754.1 ms ✓ AbstractLattices 1407.1 ms ✓ ADTypes 867.1 ms ✓ Contour 1480.7 ms ✓ CEnum 1972.8 ms ✓ OffsetArrays 1461.8 ms ✓ UnsafeArrays 1075.1 ms ✓ TriplotBase 2521.5 ms ✓ Format 803.8 ms ✓ UnPack 4452.9 ms ✓ FillArrays 806.1 ms ✓ IntegerMathUtils 1192.7 ms ✓ Statistics 1161.3 ms ✓ IterTools 4529.6 ms ✓ MacroTools 1336.6 ms ✓ Grisu 870.0 ms ✓ ShiftedArrays 1276.7 ms ✓ OrderedCollections 1034.0 ms ✓ Observables 1160.9 ms ✓ Requires 766.1 ms ✓ DataValueInterfaces 876.0 ms ✓ EnumX 1023.0 ms ✓ StableRNGs 757.1 ms ✓ Reexport 1109.1 ms ✓ DocStringExtensions 1761.1 ms ✓ InlineStrings 1106.7 ms ✓ AbstractTrees 820.7 ms ✓ Twiddle 2319.4 ms ✓ IrrationalConstants 1064.6 ms ✓ IntervalSets 931.1 ms ✓ RoundingEmulator 1125.6 ms ✓ Extents 1082.7 ms ✓ PtrArrays 1217.4 ms ✓ TranscodingStreams 1038.8 ms ✓ NaNMath 910.2 ms ✓ LazyModules 1138.9 ms ✓ Multisets 1073.0 ms ✓ DelimitedFiles 1257.9 ms ✓ RingLists 1269.0 ms ✓ InvertedIndices 1117.0 ms ✓ Inflate 1106.3 ms ✓ ConstructionBase 1101.3 ms ✓ Mods 875.6 ms ✓ DataAPI 1875.8 ms ✓ Crayons 1572.3 ms ✓ Functors 936.6 ms ✓ StaticArraysCore 1738.4 ms ✓ TupleTools 1132.4 ms ✓ MappedArrays 829.0 ms ✓ WeakKeyIdDicts 1699.0 ms ✓ SuiteSparse 1917.8 ms ✓ ProgressMeter 1203.2 ms ✓ Formatting 1493.3 ms ✓ WoodburyMatrices 4261.7 ms ✓ SentinelArrays 1850.7 ms ✓ StructTypes 966.6 ms ✓ Scratch 1267.0 ms ✓ Preferences 1253.7 ms ✓ Compat 4138.0 ms ✓ UnicodeFun 5567.7 ms ✓ PkgVersion 1214.4 ms ✓ Permutations 961.8 ms ✓ StatisticalTraits 4188.8 ms ✓ AbstractFFTs → AbstractFFTsTestExt 819.4 ms ✓ TableTraits 1963.1 ms ✓ DifferentiationInterface 1008.1 ms ✓ StackViews 1057.9 ms ✓ PaddedViews 5096.6 ms ✓ FillArrays → FillArraysSparseArraysExt 1231.2 ms ✓ Primes 901.7 ms ✓ SignedDistanceFields 4161.5 ms ✓ FixedPointNumbers 1515.8 ms ✓ Distances 1048.1 ms ✓ ScikitLearnBase 1408.2 ms ✓ Statistics → SparseArraysExt 1015.1 ms ✓ FillArrays → FillArraysStatisticsExt 1601.4 ms ✓ CommonSubexpressions 4265.1 ms ✓ SimpleTraits 977.7 ms ✓ Showoff 1048.2 ms ✓ Parameters 3916.5 ms ✓ MakieCore 836.2 ms ✓ Ratios 967.7 ms ✓ Adapt 11836.5 ms ✓ FileIO 1756.0 ms ✓ PikaParser 1540.5 ms ✓ LogExpFunctions 919.0 ms ✓ IntervalSets → IntervalSetsRandomExt 911.6 ms ✓ IntervalSets → IntervalSetsStatisticsExt 1113.0 ms ✓ AliasTables 1179.1 ms ✓ BioGenerics 1058.9 ms ✓ CodecZlib 917.1 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 941.5 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 905.9 ms ✓ ADTypes → ADTypesConstructionBaseExt 1092.8 ms ✓ PooledArrays 2018.0 ms ✓ GeoInterface 1042.9 ms ✓ Missings 951.0 ms ✓ DiffResults 1814.0 ms ✓ PDMats 1650.1 ms ✓ AxisAlgorithms 1229.4 ms ✓ RelocatableFolders 1209.0 ms ✓ JLLWrappers 1045.5 ms ✓ PrecompileTools 967.4 ms ✓ Compat → CompatLinearAlgebraExt 4029.0 ms ✓ MLJModelInterface 1790.6 ms ✓ Tables 1429.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1347.2 ms ✓ MosaicViews 4877.8 ms ✓ ColorTypes 1427.8 ms ✓ Distances → DistancesSparseArraysExt 994.8 ms ✓ Ratios → RatiosFixedPointNumbersExt 1360.4 ms ✓ Adapt → AdaptSparseArraysExt 1189.1 ms ✓ ArrayInterface 1002.3 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1794.4 ms ✓ AxisArrays 3098.8 ms ✓ Setfield 1458.6 ms ✓ FillArrays → FillArraysPDMatsExt 1410.8 ms ✓ OpenBLASConsistentFPCSR_jll 1350.2 ms ✓ Graphite2_jll 1375.7 ms ✓ Libmount_jll 1430.4 ms ✓ LLVMOpenMP_jll 1425.3 ms ✓ Bzip2_jll 1371.5 ms ✓ Rmath_jll 1423.2 ms ✓ Xorg_libXau_jll 1435.8 ms ✓ libpng_jll 1387.1 ms ✓ libfdk_aac_jll 1434.5 ms ✓ Imath_jll 6298.5 ms ✓ IntelOpenMP_jll 1430.3 ms ✓ Giflib_jll 1423.5 ms ✓ LAME_jll 1428.9 ms ✓ LERC_jll 1437.3 ms ✓ EarCut_jll 1398.5 ms ✓ CRlibm_jll 1410.2 ms ✓ JpegTurbo_jll 1459.4 ms ✓ XZ_jll 1432.0 ms ✓ Ogg_jll 1397.2 ms ✓ NLopt_jll 1407.0 ms ✓ oneTBB_jll 1395.6 ms ✓ Xorg_libXdmcp_jll 1416.8 ms ✓ x265_jll 1934.4 ms ✓ x264_jll 1653.3 ms ✓ Arpack_jll 1910.5 ms ✓ libaom_jll 1689.3 ms ✓ Zstd_jll 1357.0 ms ✓ Expat_jll 1420.9 ms ✓ LZO_jll 1413.1 ms ✓ Opus_jll 1229.4 ms ✓ Xorg_xtrans_jll 1440.3 ms ✓ Libiconv_jll 1418.5 ms ✓ Libffi_jll 1373.3 ms ✓ isoband_jll 1556.1 ms ✓ FFTW_jll 1435.1 ms ✓ OpenSpecFun_jll 1352.3 ms ✓ Libuuid_jll 1443.0 ms ✓ FriBidi_jll 14423.3 ms ✓ StaticArrays 3047.6 ms ✓ RecipesBase 3236.4 ms ✓ StringManipulation 2697.1 ms ✓ BioSymbols 18430.7 ms ✓ SIMD 18609.3 ms ✓ Parsers ✗ JLD2 6462.2 ms ✓ DataStructures 2450.6 ms ✓ FilePathsBase 2889.8 ms ✓ ChainRulesCore 1708.2 ms ✓ StructArrays 6990.0 ms ✓ StableHashTraits 6578.6 ms ✓ QOI 4231.7 ms ✓ ColorVectorSpace 8034.6 ms ✓ Colors 1377.2 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 897.2 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1423.5 ms ✓ Pixman_jll 1645.4 ms ✓ FreeType2_jll 1851.8 ms ✓ Rmath 1653.9 ms ✓ OpenEXR_jll 10327.6 ms ✓ IntervalArithmetic 2832.6 ms ✓ libsixel_jll 2176.0 ms ✓ libvorbis_jll 2391.2 ms ✓ NLopt 9358.1 ms ✓ MKL_jll 1785.3 ms ✓ Xorg_libxcb_jll 1640.9 ms ✓ Arpack 1653.2 ms ✓ Libtiff_jll 1671.6 ms ✓ XML2_jll 1183.5 ms ✓ Isoband 5616.6 ms ✓ SpecialFunctions 1624.7 ms ✓ StaticArrays → StaticArraysStatisticsExt 1677.1 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1636.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1614.1 ms ✓ Adapt → AdaptStaticArraysExt 38906.9 ms ✓ Polynomials 1434.5 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 32301.1 ms ✓ PrettyTables 10147.7 ms ✓ BioSequences 21630.5 ms ✓ Automa 3991.3 ms ✓ JSON 1183.2 ms ✓ InlineStrings → ParsersExt 2819.0 ms ✓ SortingAlgorithms 3860.1 ms ✓ QuadGK 2793.5 ms ✓ SimplePartitions 133155.6 ms ✓ TiffImages 1670.5 ms ✓ FilePathsBase → FilePathsBaseMmapExt 3536.7 ms ✓ FilePathsBase → FilePathsBaseTestExt 1771.3 ms ✓ FilePaths 1482.9 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 1052.5 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 1041.6 ms ✓ ADTypes → ADTypesChainRulesCoreExt 1025.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 1125.4 ms ✓ Distances → DistancesChainRulesCoreExt 3491.4 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 998.1 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 1707.0 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 990.7 ms ✓ StructArrays → StructArraysAdaptExt 1491.2 ms ✓ StructArrays → StructArraysSparseArraysExt 1873.4 ms ✓ StructArrays → StructArraysStaticArraysExt 1117.4 ms ✓ StructArrays → StructArraysLinearAlgebraExt 1500.0 ms ✓ Graphics 1477.9 ms ✓ Animations 34525.2 ms ✓ ImageCore 8058.5 ms ✓ ColorSchemes 1365.3 ms ✓ FiniteDiff 2110.9 ms ✓ FreeType 1683.1 ms ✓ Fontconfig_jll 7458.5 ms ✓ OpenEXR 11067.4 ms ✓ ExactPredicates 1368.0 ms ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt 3965.3 ms ✓ IntervalArithmetic → IntervalArithmeticRecipesBaseExt 7494.6 ms ✓ FFTW 1649.4 ms ✓ Xorg_libX11_jll 1259.9 ms ✓ LightXML 1619.4 ms ✓ Gettext_jll 4564.5 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2755.6 ms ✓ HypergeometricFunctions 1407.6 ms ✓ DiffRules 2022.7 ms ✓ ColorVectorSpace → SpecialFunctionsExt 4363.3 ms ✓ NearestNeighbors 5637.1 ms ✓ Polynomials → PolynomialsMakieCoreExt 3860.7 ms ✓ Polynomials → PolynomialsChainRulesCoreExt 4524.5 ms ✓ SimplePolynomials 20912.2 ms ✓ FASTX 3297.3 ms ✓ ColorBrewer 2591.4 ms ✓ WeakRefStrings 10014.6 ms ✓ StatsBase 91376.3 ms ✓ DataFrames 4594.7 ms ✓ Interpolations 14101.1 ms ✓ GeometryBasics 4450.9 ms ✓ ImageBase 7976.6 ms ✓ PNGFiles 12414.4 ms ✓ Sixel 12117.5 ms ✓ JpegTurbo 19233.8 ms ✓ PlotUtils 1383.2 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1639.0 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1438.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 4531.4 ms ✓ Polynomials → PolynomialsFFTWExt 1671.3 ms ✓ Xorg_libXrender_jll 1724.6 ms ✓ Xorg_libXext_jll 1700.8 ms ✓ Glib_jll 3324.0 ms ✓ StatsFuns 9772.2 ms ✓ ForwardDiff 1433.1 ms ✓ IntervalArithmetic → IntervalArithmeticDiffRulesExt 4419.6 ms ✓ LinearAlgebraX 2662.9 ms ✓ FASTX → BioSequencesExt 32439.9 ms ✓ CSV 8972.7 ms ✓ ParallelKMeans 9873.9 ms ✓ Clustering 14220.4 ms ✓ GridLayoutBase 3231.9 ms ✓ Packing 5894.2 ms ✓ ShaderAbstractions 7127.6 ms ✓ FreeTypeAbstraction 9403.4 ms ✓ ImageAxes 1642.7 ms ✓ Libglvnd_jll 1845.2 ms ✓ Cairo_jll 4114.2 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 9788.5 ms ✓ StatsModels 15371.9 ms ✓ Distributions 4410.1 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1979.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 2016.6 ms ✓ IntervalArithmetic → IntervalArithmeticForwardDiffExt 25357.2 ms ✓ MathTeXEngine 8783.8 ms ✓ ImageMetadata 1772.3 ms ✓ libwebp_jll 1850.4 ms ✓ HarfBuzz_jll 6487.3 ms ✓ Distributions → DistributionsTestExt 6430.4 ms ✓ Distributions → DistributionsChainRulesCoreExt 5929.5 ms ✓ SimpleRandom 9648.4 ms ✓ GLM 9085.2 ms ✓ MultivariateStats ✗ GaussianMixtures 4774.5 ms ✓ NLSolversBase 12040.7 ms ✓ Netpbm 10565.3 ms ✓ WebP 1782.3 ms ✓ libass_jll 1738.0 ms ✓ Pango_jll 7846.1 ms ✓ KernelDensity 28241.1 ms ✓ PhyloNetworks 7320.9 ms ✓ LineSearches 6174.1 ms ✓ ImageIO 1898.9 ms ✓ FFMPEG_jll 3028.9 ms ✓ Cairo 11849.8 ms ✓ Optim 10308.9 ms ✓ SimpleGraphs 15329.5 ms ✓ DelaunayTriangulation 213515.9 ms ✓ Makie 154175.2 ms ✓ CairoMakie ✗ PhyloClustering 317 dependencies successfully precompiled in 2022 seconds. 40 already precompiled. 6 dependencies had output during precompilation: ┌ IntervalSets │ WARNING: Constructor for type "UnitRange" was extended in `IntervalSets` without explicit qualification or import. │ NOTE: Assumed "UnitRange" refers to `Base.UnitRange`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function UnitRange end`. │ Hint: To silence the warning, qualify `UnitRange` as `Base.UnitRange` in the method signature or explicitly `import Base: UnitRange`. └ ┌ Formatting │ ┌ Warning: DEPRECATION NOTICE │ │ │ │ Formatting.jl has been unmaintained for a while, with some serious │ │ correctness bugs compromising the original purpose of the package. As a result, │ │ it has been deprecated - consider using an alternative, such as │ │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly. │ │ │ │ If you are not using Formatting.jl as a direct dependency, please consider │ │ opening an issue on any packages you are using that do use it as a dependency. │ │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which │ │ package originally brings it in as a dependency. │ └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12 └ ┌ Makie │ ┌ Warning: `stable_hash(x; version < 4)` is not supported in Julia 1.11 or higher. Calls should not error, but *may* silently produce different hashes. `stable_hash` is intended to be used for caching, so this likely will simply reduce the number of cache hits. Upgrade to using `stable_hash(x; version=4) to avoid this warning. │ └ @ StableHashTraits ~/.julia/packages/StableHashTraits/FV3wr/src/main_interface.jl:55 └ ┌ StableRNGs │ WARNING: Constructor for type "Sampler" was extended in `StableRNGs` without explicit qualification or import. │ NOTE: Assumed "Sampler" refers to `Random.Sampler`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Sampler end`. │ Hint: To silence the warning, qualify `Sampler` as `Random.Sampler` in the method signature or explicitly `import Random: Sampler`. └ ┌ BioSymbols │ WARNING: Constructor for type "Char" was extended in `BioSymbols` without explicit qualification or import. │ NOTE: Assumed "Char" refers to `Base.Char`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Char end`. │ Hint: To silence the warning, qualify `Char` as `Base.Char` in the method signature or explicitly `import Base: Char`. └ ┌ MKL_jll │ Downloading artifact: IntelOpenMP └ ERROR: LoadError: The following 1 direct dependency failed to precompile: PhyloClustering Failed to precompile PhyloClustering [2e4ec7c6-185f-4bfd-8419-ce336ea983f6] to "/home/pkgeval/.julia/compiled/v1.13/PhyloClustering/jl_ZJITLx" (ProcessExited(1)). Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_eUDMru"). Fatal error: ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2182 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2190 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2460 [4] _require_prelocked @ ./loading.jl:2459 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2457 [7] require @ ./loading.jl:2455 [inlined] [8] #37 @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined] [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock) @ Base ./lock.jl:335 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [11] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [12] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [13] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [14] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [15] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [16] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [17] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [18] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [19] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [20] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [22] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 Stacktrace: [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [4] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [6] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [7] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [8] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [9] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [10] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [11] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [12] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [13] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [14] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [15] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [17] IncludeInto @ ./Base.jl:305 [inlined] [18] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [24] include_string @ ./loading.jl:2834 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.13/JLD2/jl_F5DAf4" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] top-level scope @ ~/.julia/packages/GaussianMixtures/tYojF/src/GaussianMixtures.jl:11 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [24] include_string @ ./loading.jl:2834 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/GaussianMixtures/tYojF/src/GaussianMixtures.jl:6 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile GaussianMixtures [cc18c42c-b769-54ff-9e2a-b28141a64aae] to "/home/pkgeval/.julia/compiled/v1.13/GaussianMixtures/jl_CM2EjO" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [19] top-level scope @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:6 [20] include(mod::Module, _path::String) @ Base ./Base.jl:303 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2978 [22] top-level scope @ stdin:5 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [25] include_string @ ./loading.jl:2834 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [27] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/models.jl:1 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 2017.52s ################################################################################ # Loading # Loading PhyloClustering... Precompiling packages... ✗ JLD2 ✗ GaussianMixtures Info Given PhyloClustering was explicitly requested, output will be shown live  Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_B67SVN").  Fatal error: ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2") Stacktrace:  [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool)  @ Base ./loading.jl:2182  [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool)  @ Base ./loading.jl:2190  [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing)  @ Base ./loading.jl:2460  [4] _require_prelocked  @ ./loading.jl:2459 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(uuidkey::Base.PkgId)  @ Base ./loading.jl:2457  [7] require  @ ./loading.jl:2455 [inlined]  [8] #37  @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined]  [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock)  @ Base ./lock.jl:335  [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{})  @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203  [11] action  @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined]  [12] action  @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined]  [13] load(::String; options::@Kwargs{})  @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113  [14] load  @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined]  [15] #111  @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined]  [16] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String)  @ Base.Filesystem ./file.jl:870  [17] mktemp(fn::Function)  @ Base.Filesystem ./file.jl:868  [18] macro expansion  @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined]  [19] macro expansion  @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]  [20] macro expansion  @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined]  [21] macro expansion  @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]  [22] top-level scope  @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 Stacktrace:  [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}})  @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71  [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String)  @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66  [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{})  @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228  [4] action  @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined]  [5] action  @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined]  [6] load(::String; options::@Kwargs{})  @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113  [7] load  @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined]  [8] #111  @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined]  [9] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String)  @ Base.Filesystem ./file.jl:870  [10] mktemp(fn::Function)  @ Base.Filesystem ./file.jl:868  [11] macro expansion  @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined]  [12] macro expansion  @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined]  [13] macro expansion  @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined]  [14] macro expansion  @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined]  [15] top-level scope  @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118  [16] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:304  [17] IncludeInto  @ ./Base.jl:305 [inlined]  [18] top-level scope  @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518  [19] include(mod::Module, _path::String)  @ Base ./Base.jl:303  [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:2978  [21] top-level scope  @ stdin:5  [22] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2824  [24] include_string  @ ./loading.jl:2834 [inlined]  [25] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:329  [26] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.13/JLD2/jl_ghIIPl" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3265  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2651  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})  @ Base ./reflection.jl:1279  [8] #invokelatest_gr#234  @ ./reflection.jl:1287 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1281 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3836  [11] maybe_cachefile_lock  @ ./loading.jl:3833 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2637  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2465  [14] macro expansion  @ ./loading.jl:2393 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2358  [17] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2334  [18] top-level scope  @ ~/.julia/packages/GaussianMixtures/tYojF/src/GaussianMixtures.jl:11  [19] include(mod::Module, _path::String)  @ Base ./Base.jl:303  [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:2978  [21] top-level scope  @ stdin:5  [22] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2824  [24] include_string  @ ./loading.jl:2834 [inlined]  [25] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:329  [26] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/GaussianMixtures/tYojF/src/GaussianMixtures.jl:6 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile GaussianMixtures [cc18c42c-b769-54ff-9e2a-b28141a64aae] to "/home/pkgeval/.julia/compiled/v1.13/GaussianMixtures/jl_ZQ16bY" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3265  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2651  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})  @ Base ./reflection.jl:1279  [8] #invokelatest_gr#234  @ ./reflection.jl:1287 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1281 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3836  [11] maybe_cachefile_lock  @ ./loading.jl:3833 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2637  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2465  [14] macro expansion  @ ./loading.jl:2393 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2358  [17] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2334  [18] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:304  [19] top-level scope  @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:6  [20] include(mod::Module, _path::String)  @ Base ./Base.jl:303  [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2978  [22] top-level scope  @ stdin:5  [23] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2824  [25] include_string  @ ./loading.jl:2834 [inlined]  [26] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:329  [27] _start()  @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/models.jl:1 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3 in expression starting at stdin:5 ✗ PhyloClustering 0 dependencies successfully precompiled in 272 seconds. 357 already precompiled. ERROR: The following 1 direct dependency failed to precompile: PhyloClustering Failed to precompile PhyloClustering [2e4ec7c6-185f-4bfd-8419-ce336ea983f6] to "/home/pkgeval/.julia/compiled/v1.13/PhyloClustering/jl_wpN1Ia" (ProcessExited(1)). Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_B67SVN"). Fatal error: ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2182 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2190 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2460 [4] _require_prelocked @ ./loading.jl:2459 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2457 [7] require @ ./loading.jl:2455 [inlined] [8] #37 @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined] [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock) @ Base ./lock.jl:335 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [11] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [12] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [13] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [14] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [15] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [16] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [17] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [18] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [19] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [20] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [22] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 Stacktrace: [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [4] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [6] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [7] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [8] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [9] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [10] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [11] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [12] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [13] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [14] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [15] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [17] IncludeInto @ ./Base.jl:305 [inlined] [18] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [24] include_string @ ./loading.jl:2834 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.13/JLD2/jl_ghIIPl" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] top-level scope @ ~/.julia/packages/GaussianMixtures/tYojF/src/GaussianMixtures.jl:11 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2978 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [24] include_string @ ./loading.jl:2834 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/GaussianMixtures/tYojF/src/GaussianMixtures.jl:6 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile GaussianMixtures [cc18c42c-b769-54ff-9e2a-b28141a64aae] to "/home/pkgeval/.julia/compiled/v1.13/GaussianMixtures/jl_ZQ16bY" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3265 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2651 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#234 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3836 [11] maybe_cachefile_lock @ ./loading.jl:3833 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2637 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2465 [14] macro expansion @ ./loading.jl:2393 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2358 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2334 [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [19] top-level scope @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:6 [20] include(mod::Module, _path::String) @ Base ./Base.jl:303 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2978 [22] top-level scope @ stdin:5 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2824 [25] include_string @ ./loading.jl:2834 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [27] _start() @ Base ./client.jl:563 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/models.jl:1 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3 in expression starting at stdin: Loading failed after 274.03s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using PhyloClustering'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run(::Cmd) @ Base ./process.jl:514 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:303 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [7] _start() @ Base ./client.jl:563 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 2376.61s: package fails to precompile