Package evaluation of MinkowskiFunctionals on Julia 1.13.0-DEV.427 (855bef3b06*) started at 2025-04-23T21:40:38.678 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.5s ################################################################################ # Installation # Installing MinkowskiFunctionals... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [966f3356] + MinkowskiFunctionals v0.13.8 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [31c24e10] + Distributions v0.25.119 [968ba79b] + DocOpt v0.5.0 [ffbed154] + DocStringExtensions v0.9.4 [1a297f60] + FillArrays v1.13.0 [f67ccb44] + HDF5 v0.17.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [966f3356] + MinkowskiFunctionals v0.13.8 [e1d29d7a] + Missings v1.2.0 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.34 [5432bcbf] + PaddedViews v0.5.12 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.4.0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [7cb0a576] + MPICH_jll v4.3.0+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.7+2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [477f73a3] + libaec_jll v1.1.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Installation completed after 8.4s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 35.52s ################################################################################ # Testing # Testing MinkowskiFunctionals Status `/tmp/jl_Wa8mRV/Project.toml` [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.119 [968ba79b] DocOpt v0.5.0 [f67ccb44] HDF5 v0.17.2 [966f3356] MinkowskiFunctionals v0.13.8 [5432bcbf] PaddedViews v0.5.12 [92933f4c] ProgressMeter v1.10.4 [90137ffa] StaticArrays v1.9.13 [2913bbd2] StatsBase v0.34.4 [ade2ca70] Dates v1.11.0 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Wa8mRV/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [34da2185] Compat v4.16.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.119 [968ba79b] DocOpt v0.5.0 [ffbed154] DocStringExtensions v0.9.4 [1a297f60] FillArrays v1.13.0 [f67ccb44] HDF5 v0.17.2 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [3da0fdf6] MPIPreferences v0.1.11 [966f3356] MinkowskiFunctionals v0.13.8 [e1d29d7a] Missings v1.2.0 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.34 [5432bcbf] PaddedViews v0.5.12 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.4.0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.0+0 [7cb0a576] MPICH_jll v4.3.0+1 [f1f71cc9] MPItrampoline_jll v5.5.3+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.7+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [477f73a3] libaec_jll v1.1.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Testing Running tests... ┌ Warning: `pdf(d::DiscreteUnivariateDistribution)` is deprecated, use `map(Base.Fix1(pdf, d), support(d))` instead. │ caller = top-level scope at generate.jl:7 └ @ Core ~/.julia/packages/MinkowskiFunctionals/6j99a/test/generate.jl:7 ┌ Warning: `pdf(d::DiscreteUnivariateDistribution)` is deprecated, use `map(Base.Fix1(pdf, d), support(d))` instead. │ caller = top-level scope at generate.jl:7 └ @ Core ~/.julia/packages/MinkowskiFunctionals/6j99a/test/generate.jl:7 ┌ Warning: `pdf(d::DiscreteUnivariateDistribution)` is deprecated, use `map(Base.Fix1(pdf, d), support(d))` instead. │ caller = pdf at distributions.jl:35 [inlined] └ @ Core ~/.julia/packages/MinkowskiFunctionals/6j99a/src/distributions.jl:35 ┌ Warning: `pdf(d::DiscreteUnivariateDistribution)` is deprecated, use `map(Base.Fix1(pdf, d), support(d))` instead. │ caller = pdf(d::AreaDistribution) at distributions.jl:35 └ @ Core ~/.julia/packages/MinkowskiFunctionals/6j99a/src/distributions.jl:35 Macrostates do not yet exist. Generating them. Macrostates do not yet exist. Generating them. ┌ Warning: `pdf(d::DiscreteUnivariateDistribution)` is deprecated, use `map(Base.Fix1(pdf, d), support(d))` instead. │ caller = top-level scope at minkowski_map.jl:8 └ @ Core ~/.julia/packages/MinkowskiFunctionals/6j99a/test/minkowski_map.jl:8 ┌ Warning: `pdf(d::DiscreteUnivariateDistribution)` is deprecated, use `map(Base.Fix1(pdf, d), support(d))` instead. │ caller = top-level scope at minkowski_map.jl:8 └ @ Core ~/.julia/packages/MinkowskiFunctionals/6j99a/test/minkowski_map.jl:8 ┌ Warning: `pdf(d::DiscreteUnivariateDistribution)` is deprecated, use `map(Base.Fix1(pdf, d), support(d))` instead. │ caller = top-level scope at minkowski_map.jl:8 └ @ Core ~/.julia/packages/MinkowskiFunctionals/6j99a/test/minkowski_map.jl:8 ┌ Warning: `pdf(d::DiscreteUnivariateDistribution)` is deprecated, use `map(Base.Fix1(pdf, d), support(d))` instead. │ caller = top-level scope at minkowski_map.jl:8 └ @ Core ~/.julia/packages/MinkowskiFunctionals/6j99a/test/minkowski_map.jl:8 ┌ Warning: `pdf(d::DiscreteUnivariateDistribution)` is deprecated, use `map(Base.Fix1(pdf, d), support(d))` instead. │ caller = top-level scope at minkowski_map.jl:8 └ @ Core ~/.julia/packages/MinkowskiFunctionals/6j99a/test/minkowski_map.jl:8 ┌ Warning: `pdf(d::DiscreteUnivariateDistribution)` is deprecated, use `map(Base.Fix1(pdf, d), support(d))` instead. │ caller = top-level scope at minkowski_map.jl:8 └ @ Core ~/.julia/packages/MinkowskiFunctionals/6j99a/test/minkowski_map.jl:8 ┌ Warning: `pdf(d::DiscreteUnivariateDistribution)` is deprecated, use `map(Base.Fix1(pdf, d), support(d))` instead. │ caller = top-level scope at minkowski_map.jl:8 └ @ Core ~/.julia/packages/MinkowskiFunctionals/6j99a/test/minkowski_map.jl:8 ┌ Warning: `pdf(d::DiscreteUnivariateDistribution)` is deprecated, use `map(Base.Fix1(pdf, d), support(d))` instead. │ caller = top-level scope at minkowski_map.jl:8 └ @ Core ~/.julia/packages/MinkowskiFunctionals/6j99a/test/minkowski_map.jl:8 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 177 running 1 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7c47e628af14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30085.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3498 [inlined] ijl_apply_generic at /source/src/gf.c:3698 jl_apply at /source/src/julia.h:2353 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) _ZNK4llvm6object7ELFFileINS0_7ELFTypeILNS_10endiannessE1ELb1EEEE10getSectionEj at /opt/julia/bin/../lib/julia/libLLVM.so.19.1jl (unknown line) unknown function (ip: 0x7ffd28d31fcf) at (unknown file) unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7091fb850f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30085.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3498 [inlined] ijl_apply_generic at /source/src/gf.c:3698 jl_apply at /source/src/julia.h:2353 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30085.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3498 [inlined] ijl_apply_generic at /source/src/gf.c:3698 jl_apply at /source/src/julia.h:2353 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x00007091ef17c1f0 Total snapshots: 227. Utilization: 0% ╎227 @Base/task.jl:1150 wait_forever() 226╎ 227 @Base/task.jl:1216 wait() Thread 2 (default) Task 0x00007091f17fc100 Total snapshots: 227. Utilization: 0% ╎227 @Base/task.jl:1150 wait_forever() 226╎ 227 @Base/task.jl:1216 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 unknown function (ip: 0x7091fb850f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 [177] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/MinkowskiFunctionals/6j99a/test/minkowski_map.jl:7 unknown function (ip: 0x7c47e628af14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 wait_forever at ./task.jl:1150 jfptr_wait_forever_30085.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3498 [inlined] ijl_apply_generic at /source/src/gf.c:3698 jl_apply at /source/src/julia.h:2353 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jfptr_wait_forever_30085.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3498 [inlined] ijl_apply_generic at /source/src/gf.c:3698 jl_apply at /source/src/julia.h:2353 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) _ZNK4llvm6object7ELFFileINS0_7ELFTypeILNS_10endiannessE1ELb1EEEE25getSectionContentsAsArrayINS0_12Elf_Sym_ImplIS4_EEEENS_8ExpectedINS_8ArrayRefIT_EEEERKNS0_13Elf_Shdr_ImplIS4_EE at /opt/julia/bin/../lib/julia/libLLVM.so.19.1jl (unknown line) unknown function (ip: 0x7c47a18dfb27) at (unknown file) unknown function (ip: 0x1a6bd00000023) at (unknown file) unknown function (ip: (nil)) at (unknown file) Allocations: 36409200 (Pool: 36408868; Big: 332); GC: 36 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30085.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3498 [inlined] ijl_apply_generic at /source/src/gf.c:3698 jl_apply at /source/src/julia.h:2353 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 21791733 (Pool: 21791233; Big: 500); GC: 18 PkgEval terminated after 2723.69s: test duration exceeded the time limit