Package evaluation of SymFEL on Julia 1.12.0-DEV.2153 (83dcbd426d*) started at 2025-03-31T11:05:21.557 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.86s ################################################################################ # Installation # Installing SymFEL... Resolving package versions... Installed Conda ── v1.10.2 Installed PyCall ─ v1.96.4 Updating `~/.julia/environments/v1.12/Project.toml` [98344202] + SymFEL v0.2.2 Updating `~/.julia/environments/v1.12/Manifest.toml` ⌅ [3709ef60] + CommonEq v0.2.0 [38540f10] + CommonSolve v0.2.4 [8f4d0f93] + Conda v1.10.2 [ffbed154] + DocStringExtensions v0.9.4 [1fa38f19] + Format v1.3.7 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.6 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [aea7be01] + PrecompileTools v1.3.0 [21216c6a] + Preferences v1.4.3 [438e738f] + PyCall v1.96.4 [3cdcf5f2] + RecipesBase v1.3.4 [ae029012] + Requires v1.3.1 [276daf66] + SpecialFunctions v2.5.0 [98344202] + SymFEL v0.2.2 ⌅ [24249f21] + SymPy v1.2.1 [81def892] + VersionParsing v1.3.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Installation completed after 63.01s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 36.15s ################################################################################ # Testing # Testing SymFEL Status `/tmp/jl_lqV46Z/Project.toml` [98344202] SymFEL v0.2.2 ⌅ [24249f21] SymPy v1.2.1 [37e2e46d] LinearAlgebra v1.12.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_lqV46Z/Manifest.toml` ⌅ [3709ef60] CommonEq v0.2.0 [38540f10] CommonSolve v0.2.4 [8f4d0f93] Conda v1.10.2 [ffbed154] DocStringExtensions v0.9.4 [1fa38f19] Format v1.3.7 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.6 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.15 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [aea7be01] PrecompileTools v1.3.0 [21216c6a] Preferences v1.4.3 [438e738f] PyCall v1.96.4 [3cdcf5f2] RecipesBase v1.3.4 [ae029012] Requires v1.3.1 [276daf66] SpecialFunctions v2.5.0 [98344202] SymFEL v0.2.2 ⌅ [24249f21] SymPy v1.2.1 [81def892] VersionParsing v1.3.0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Installing sympy via the Conda sympy package... [ Info: Running `conda install -q -y sympy` in root environment Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - sympy The following packages will be downloaded: package | build ---------------------------|----------------- cpython-3.12.9 | py312hd8ed1ab_1 45 KB conda-forge gmp-6.3.0 | hac33072_2 449 KB conda-forge gmpy2-2.1.5 | py312h7201bc8_3 205 KB conda-forge mpc-1.3.1 | h24ddda3_1 114 KB conda-forge mpfr-4.2.1 | h90cbb55_3 620 KB conda-forge mpmath-1.3.0 | pyhd8ed1ab_1 429 KB conda-forge sympy-1.13.3 | pyh2585a3b_105 4.3 MB conda-forge ------------------------------------------------------------ Total: 6.1 MB The following NEW packages will be INSTALLED: cpython conda-forge/noarch::cpython-3.12.9-py312hd8ed1ab_1 gmp conda-forge/linux-64::gmp-6.3.0-hac33072_2 gmpy2 conda-forge/linux-64::gmpy2-2.1.5-py312h7201bc8_3 mpc conda-forge/linux-64::mpc-1.3.1-h24ddda3_1 mpfr conda-forge/linux-64::mpfr-4.2.1-h90cbb55_3 mpmath conda-forge/noarch::mpmath-1.3.0-pyhd8ed1ab_1 sympy conda-forge/noarch::sympy-1.13.3-pyh2585a3b_105 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done # Testing Lagrange elements # Testing Hermite elements n = 2 ErrorException("The degree of Hermite polynomials should be odd and >= 3") Testing get_em() function. ErrorException("Only Lagrange and Hermite FEM are implemented.") ErrorException("The third argument should verify der1 ∈ [0, …, deg1]...") ErrorException("The fourth parameter should verify der2 ∈ [0, …, deg2]...") ErrorException("The third parameter should verify der1 ∈ [0, …,int(deg1 / 2 + 1)]...") ErrorException("The fourth parameter should verify der2 ∈ [0, …,int(deg2 / 2 + 1)]...") [280] signal 11 (1): Segmentation fault in expression starting at /home/pkgeval/.julia/packages/SymFEL/6Iarr/test/runtests.jl:133 _PyInterpreterState_GET at /usr/local/src/conda/python-3.12.9/Include/internal/pycore_pystate.h:133 [inlined] get_gc_state at /usr/local/src/conda/python-3.12.9/Modules/gcmodule.c:134 [inlined] PyObject_GC_Del at /usr/local/src/conda/python-3.12.9/Modules/gcmodule.c:2421 pydecref_ at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/PyCall.jl:118 [inlined] pydecref at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/PyCall.jl:123 unknown function (ip: 0x749b77b1a305) at (unknown file) _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 run_finalizer at /source/src/gc-common.c:180 jl_gc_run_finalizers_in_list at /source/src/gc-common.c:270 run_finalizers at /source/src/gc-common.c:316 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:210 jfptr_finish_nocycle_120092.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4360 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1219 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1311 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1319 jfptr_typeinf_ext_toplevel_120002.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 jl_apply at /source/src/julia.h:2347 [inlined] jl_type_infer at /source/src/gf.c:453 jl_compile_method_internal at /source/src/gf.c:2959 _jl_invoke at /source/src/gf.c:3454 [inlined] ijl_apply_generic at /source/src/gf.c:3662 jl_apply at /source/src/julia.h:2347 [inlined] start_task at /source/src/task.c:1249 Allocations: 21968615 (Pool: 21968404; Big: 211); GC: 17 Testing failed after 69.29s ERROR: LoadError: Package SymFEL errored during testing (received signal: 11) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval crashed after 272.81s: GC corruption was detected