Package evaluation of SpatialEcology on Julia 1.12.0-DEV.2153 (83dcbd426d*) started at 2025-03-31T11:18:52.760 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.28s ################################################################################ # Installation # Installing SpatialEcology... Resolving package versions... Installed Crayons ───────────────────── v4.1.1 Installed IrrationalConstants ───────── v0.2.4 Installed TableTraits ───────────────── v1.0.1 Installed SentinelArrays ────────────── v1.4.8 Installed PtrArrays ─────────────────── v1.3.0 Installed Tables ────────────────────── v1.12.0 Installed Preferences ───────────────── v1.4.3 Installed PooledArrays ──────────────── v1.4.3 Installed DataAPI ───────────────────── v1.16.0 Installed RecipesBase ───────────────── v1.3.4 Installed RandomBooleanMatrices ─────── v0.1.2 Installed InlineStrings ─────────────── v1.4.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed PrettyTables ──────────────── v2.4.0 Installed DataValueInterfaces ───────── v1.0.0 Installed PrecompileTools ───────────── v1.3.0 Installed OrderedCollections ────────── v1.8.0 Installed LaTeXStrings ──────────────── v1.4.0 Installed InvertedIndices ───────────── v1.3.1 Installed Reexport ──────────────────── v1.2.2 Installed Statistics ────────────────── v1.11.1 Installed DataFramesMeta ────────────── v0.14.1 Installed AliasTables ───────────────── v1.1.3 Installed LogExpFunctions ───────────── v0.3.29 Installed DataStructures ────────────── v0.18.22 Installed RandomNumbers ─────────────── v1.6.0 Installed MacroTools ────────────────── v0.5.15 Installed Chain ─────────────────────── v0.5.0 Installed StatsAPI ──────────────────── v1.7.0 Installed Distances ─────────────────── v0.10.12 Installed Compat ────────────────────── v4.16.0 Installed SpatialEcology ────────────── v0.9.16 Installed StringManipulation ────────── v0.4.1 Installed Missings ──────────────────── v1.2.0 Installed SortingAlgorithms ─────────── v1.2.1 Installed DocStringExtensions ───────── v0.9.4 Installed EcoBase ───────────────────── v0.1.7 Installed StatsBase ─────────────────── v0.34.4 Installed DataFrames ────────────────── v1.7.0 Updating `~/.julia/environments/v1.12/Project.toml` [348f2d5d] + SpatialEcology v0.9.16 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 ⌅ [8be319e6] + Chain v0.5.0 [34da2185] + Compat v4.16.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 ⌅ [1313f7d8] + DataFramesMeta v0.14.1 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.4 [a58aae7d] + EcoBase v0.1.7 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.0 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [9ae346a0] + RandomBooleanMatrices v0.1.2 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [91c51154] + SentinelArrays v1.4.8 [a2af1166] + SortingAlgorithms v1.2.1 [348f2d5d] + SpatialEcology v0.9.16 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 3.4s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6558.6 ms ✓ TestEnv 1 dependency successfully precompiled in 8 seconds. 25 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: SpatialEcology Failed to precompile SpatialEcology [348f2d5d-71a3-5ad4-b565-8af070f99681] to "/home/pkgeval/.julia/compiled/v1.12/SpatialEcology/jl_agGYiA". WARNING: Imported binding DataFrames.aggregate was undeclared at import time during import to SpatialEcology. ERROR: LoadError: invalid method definition in SpatialEcology: exported function DataFrames.aggregate does not exist Stacktrace: [1] top-level scope @ ~/.julia/packages/SpatialEcology/2IBpN/src/Operations.jl:4 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [3] top-level scope @ ~/.julia/packages/SpatialEcology/2IBpN/src/SpatialEcology.jl:53 [4] include(mod::Module, _path::String) @ Base ./Base.jl:303 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [9] include_string @ ./loading.jl:2871 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [11] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/src/Operations.jl:4 in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/src/SpatialEcology.jl:2 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 903.31s ################################################################################ # Testing # Testing SpatialEcology Status `/tmp/jl_XK99oo/Project.toml` [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.7.0 ⌅ [1313f7d8] DataFramesMeta v0.14.1 [b4f34e82] Distances v0.10.12 [a58aae7d] EcoBase v0.1.7 [91a5bcdd] Plots v1.40.11 [9ae346a0] RandomBooleanMatrices v0.1.2 [e6cf234a] RandomNumbers v1.6.0 [3cdcf5f2] RecipesBase v1.3.4 [348f2d5d] SpatialEcology v0.9.16 [860ef19b] StableRNGs v1.0.2 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_XK99oo/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [d1d4a3ce] BitFlags v0.1.9 [336ed68f] CSV v0.10.15 ⌅ [8be319e6] Chain v0.5.0 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.0 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.0 [34da2185] Compat v4.16.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [d38c429a] Contour v0.6.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 ⌅ [1313f7d8] DataFramesMeta v0.14.1 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.4 [a58aae7d] EcoBase v0.1.7 [460bff9d] ExceptionUnwrapping v0.1.11 [c87230d0] FFMPEG v0.4.2 [48062228] FilePathsBase v0.9.24 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [28b8d3ca] GR v0.73.13 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.15 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [1019f520] JLFzf v0.1.10 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.6 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [1914dd2f] MacroTools v0.5.15 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.2 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.2 [4d8831e6] OpenSSL v1.4.3 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [ccf2f8ad] PlotThemes v3.3.0 [995b91a9] PlotUtils v1.4.3 [91a5bcdd] Plots v1.40.11 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.0 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [9ae346a0] RandomBooleanMatrices v0.1.2 [e6cf234a] RandomNumbers v1.6.0 [3cdcf5f2] RecipesBase v1.3.4 [01d81517] RecipesPipeline v0.6.12 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch 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v0.73.13+0 [78b55507] Gettext_jll v0.21.0+0 ⌃ [7746bdde] Glib_jll v2.82.4+0 [3b182d85] Graphite2_jll v1.3.14+1 [2e76f6c2] HarfBuzz_jll v8.5.0+0 [aacddb02] JpegTurbo_jll v3.1.1+0 [c1c5ebd0] LAME_jll v3.100.2+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.7+0 [dd4b983a] LZO_jll v2.10.3+0 ⌅ [e9f186c6] Libffi_jll v3.2.2+2 [d4300ac3] Libgcrypt_jll v1.11.0+0 [7e76a0d4] Libglvnd_jll v1.7.0+0 [7add5ba3] Libgpg_error_jll v1.51.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.40.3+0 [89763e89] Libtiff_jll v4.7.1+0 [38a345b3] Libuuid_jll v2.40.3+0 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [e7412a2a] Ogg_jll v1.3.5+1 [91d4177d] Opus_jll v1.3.3+0 [36c8627f] Pango_jll v1.56.1+0 [30392449] Pixman_jll v0.44.2+0 ⌅ [c0090381] Qt6Base_jll v6.7.1+1 ⌅ [629bc702] Qt6Declarative_jll v6.7.1+2 ⌅ [ce943373] Qt6ShaderTools_jll v6.7.1+1 ⌃ [e99dba38] Qt6Wayland_jll v6.7.1+1 [a44049a8] Vulkan_Loader_jll v1.3.243+0 [a2964d1f] Wayland_jll v1.21.0+2 [2381bf8a] Wayland_protocols_jll v1.36.0+0 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... Info Given SpatialEcology was explicitly requested, output will be shown live  WARNING: Imported binding DataFrames.aggregate was undeclared at import time during import to SpatialEcology. ERROR: LoadError: invalid method definition in SpatialEcology: exported function DataFrames.aggregate does not exist Stacktrace:  [1] top-level scope  @ ~/.julia/packages/SpatialEcology/2IBpN/src/Operations.jl:4  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:304  [3] top-level scope  @ ~/.julia/packages/SpatialEcology/2IBpN/src/SpatialEcology.jl:53  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:303  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3015  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2861  [9] include_string  @ ./loading.jl:2871 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:326  [11] _start()  @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/src/Operations.jl:4 in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/src/SpatialEcology.jl:2 in expression starting at stdin:5 ✗ SpatialEcology 0 dependencies successfully precompiled in 17 seconds. 55 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: SpatialEcology Failed to precompile SpatialEcology [348f2d5d-71a3-5ad4-b565-8af070f99681] to "/home/pkgeval/.julia/compiled/v1.12/SpatialEcology/jl_cVMW13". WARNING: Imported binding DataFrames.aggregate was undeclared at import time during import to SpatialEcology. ERROR: LoadError: invalid method definition in SpatialEcology: exported function DataFrames.aggregate does not exist Stacktrace: [1] top-level scope @ ~/.julia/packages/SpatialEcology/2IBpN/src/Operations.jl:4 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [3] top-level scope @ ~/.julia/packages/SpatialEcology/2IBpN/src/SpatialEcology.jl:53 [4] include(mod::Module, _path::String) @ Base ./Base.jl:303 [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [6] top-level scope @ stdin:5 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [9] include_string @ ./loading.jl:2871 [inlined] [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [11] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/src/Operations.jl:4 in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/src/SpatialEcology.jl:2 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/test/ComMatrix_test.jl:3 in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/test/runtests.jl:2 Testing failed after 28.08s ERROR: LoadError: Package SpatialEcology errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 998.91s: package fails to precompile