Package evaluation of ScHoLP on Julia 1.12.0-DEV.2153 (83dcbd426d*) started at 2025-03-31T11:02:59.507


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 7.66s


################################################################################
# Installation
#

Installing ScHoLP...
   Resolving package versions...
   Installed IrrationalConstants ─ v0.2.4
   Installed Arpack_jll ────────── v3.5.1+1
   Installed DataAPI ───────────── v1.16.0
   Installed RecipesBase ───────── v0.8.0
   Installed JLLWrappers ───────── v1.7.0
   Installed TimerOutputs ──────── v0.5.28
   Installed OrderedCollections ── v1.8.0
   Installed Preferences ───────── v1.4.3
   Installed Arpack ────────────── v0.4.0
   Installed Combinatorics ─────── v0.7.0
   Installed DelimitedFiles ────── v1.9.1
   Installed Statistics ────────── v1.11.1
   Installed Polynomials ───────── v0.6.1
   Installed FastClosures ──────── v0.3.2
   Installed DataStructures ────── v0.18.22
   Installed StatsAPI ──────────── v1.7.0
   Installed LinearOperators ───── v0.7.1
   Installed ExprTools ─────────── v0.1.10
   Installed LogExpFunctions ───── v0.3.29
   Installed Compat ────────────── v4.16.0
   Installed Missings ──────────── v1.2.0
   Installed DocStringExtensions ─ v0.9.4
   Installed SortingAlgorithms ─── v1.2.1
   Installed StatsBase ─────────── v0.33.21
   Installed Krylov ────────────── v0.4.1
   Installed ScHoLP ────────────── v0.1.1
  Installing 1 artifacts
   Installed artifact Arpack 147.2 KiB
    Updating `~/.julia/environments/v1.12/Project.toml`
  [c786d6c3] + ScHoLP v0.1.1
    Updating `~/.julia/environments/v1.12/Manifest.toml`
⌅ [7d9fca2a] + Arpack v0.4.0
⌅ [861a8166] + Combinatorics v0.7.0
  [34da2185] + Compat v4.16.0
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.22
  [8bb1440f] + DelimitedFiles v1.9.1
  [ffbed154] + DocStringExtensions v0.9.4
  [e2ba6199] + ExprTools v0.1.10
  [9aa1b823] + FastClosures v0.3.2
  [92d709cd] + IrrationalConstants v0.2.4
  [692b3bcd] + JLLWrappers v1.7.0
⌅ [ba0b0d4f] + Krylov v0.4.1
⌅ [5c8ed15e] + LinearOperators v0.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.0
⌅ [f27b6e38] + Polynomials v0.6.1
  [21216c6a] + Preferences v1.4.3
⌅ [3cdcf5f2] + RecipesBase v0.8.0
  [c786d6c3] + ScHoLP v0.1.1
  [a2af1166] + SortingAlgorithms v1.2.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
⌅ [2913bbd2] + StatsBase v0.33.21
  [a759f4b9] + TimerOutputs v0.5.28
⌅ [68821587] + Arpack_jll v3.5.1+1
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.12.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.11.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2024.12.31
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [458c3c95] + OpenSSL_jll v3.0.16+0
  [bea87d4a] + SuiteSparse_jll v7.8.3+2
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.12.0+0
  [8e850ede] + nghttp2_jll v1.64.0+1
  [3f19e933] + p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 4.07s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   4720.9 ms  ✓ TestEnv
  1 dependency successfully precompiled in 6 seconds. 25 already precompiled.

Precompiling package dependencies...

Precompilation completed after 77.16s


################################################################################
# Testing
#

     Testing ScHoLP
      Status `/tmp/jl_Cud4GV/Project.toml`
⌅ [7d9fca2a] Arpack v0.4.0
⌅ [861a8166] Combinatorics v0.7.0
  [864edb3b] DataStructures v0.18.22
  [8bb1440f] DelimitedFiles v1.9.1
⌅ [ba0b0d4f] Krylov v0.4.1
⌅ [5c8ed15e] LinearOperators v0.7.1
  [c786d6c3] ScHoLP v0.1.1
  [10745b16] Statistics v1.11.1
⌅ [2913bbd2] StatsBase v0.33.21
  [37e2e46d] LinearAlgebra v1.12.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_Cud4GV/Manifest.toml`
⌅ [7d9fca2a] Arpack v0.4.0
⌅ [861a8166] Combinatorics v0.7.0
  [34da2185] Compat v4.16.0
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.22
  [8bb1440f] DelimitedFiles v1.9.1
  [ffbed154] DocStringExtensions v0.9.4
  [e2ba6199] ExprTools v0.1.10
  [9aa1b823] FastClosures v0.3.2
  [92d709cd] IrrationalConstants v0.2.4
  [692b3bcd] JLLWrappers v1.7.0
⌅ [ba0b0d4f] Krylov v0.4.1
⌅ [5c8ed15e] LinearOperators v0.7.1
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e1d29d7a] Missings v1.2.0
  [bac558e1] OrderedCollections v1.8.0
⌅ [f27b6e38] Polynomials v0.6.1
  [21216c6a] Preferences v1.4.3
⌅ [3cdcf5f2] RecipesBase v0.8.0
  [c786d6c3] ScHoLP v0.1.1
  [a2af1166] SortingAlgorithms v1.2.1
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
⌅ [2913bbd2] StatsBase v0.33.21
  [a759f4b9] TimerOutputs v0.5.28
⌅ [68821587] Arpack_jll v3.5.1+1
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.12.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.11.1+1
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2024.12.31
  [4536629a] OpenBLAS_jll v0.3.29+0
  [458c3c95] OpenSSL_jll v3.0.16+0
  [bea87d4a] SuiteSparse_jll v7.8.3+2
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.12.0+0
  [8e850ede] nghttp2_jll v1.64.0+1
  [3f19e933] p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
test_simplicial_closure
test_projected_graph
basic_matrices
example1
example2
email-Enron
contact-high-school
open_closed_triangles (1/2)
ERROR: LoadError: TaskFailedException

    nested task error: BoundsError: attempt to access 2×1 Matrix{Int64} at index [2, 2]
    Stacktrace:
     [1] throw_boundserror(A::Matrix{Int64}, I::Tuple{Int64, Int64})
       @ Base ./essentials.jl:15
     [2] checkbounds
       @ ./abstractarray.jl:699 [inlined]
     [3] getindex
       @ ./array.jl:928 [inlined]
     [4] macro expansion
       @ ~/.julia/packages/ScHoLP/uvwJk/src/util.jl:419 [inlined]
     [5] (::ScHoLP.var"#num_open_closed_triangles##0#num_open_closed_triangles##1"{ScHoLP.var"#num_open_closed_triangles##2#num_open_closed_triangles##3"{SparseMatrixCSC{Int64, Int64}, SparseMatrixCSC{Int64, Int64}, SparseMatrixCSC{Int64, Int64}, Matrix{Int64}, Vector{Int64}, Vector{Int64}, UnitRange{Int64}}})(tid::Int64; onethread::Bool)
       @ ScHoLP ./threadingconstructs.jl:276
     [6] #num_open_closed_triangles##0
       @ ./threadingconstructs.jl:243 [inlined]
     [7] (::Base.Threads.var"#threading_run##0#threading_run##1"{ScHoLP.var"#num_open_closed_triangles##0#num_open_closed_triangles##1"{ScHoLP.var"#num_open_closed_triangles##2#num_open_closed_triangles##3"{SparseMatrixCSC{Int64, Int64}, SparseMatrixCSC{Int64, Int64}, SparseMatrixCSC{Int64, Int64}, Matrix{Int64}, Vector{Int64}, Vector{Int64}, UnitRange{Int64}}}, Int64})()
       @ Base.Threads ./threadingconstructs.jl:177
Stacktrace:
  [1] threading_run(fun::ScHoLP.var"#num_open_closed_triangles##0#num_open_closed_triangles##1"{ScHoLP.var"#num_open_closed_triangles##2#num_open_closed_triangles##3"{SparseMatrixCSC{Int64, Int64}, SparseMatrixCSC{Int64, Int64}, SparseMatrixCSC{Int64, Int64}, Matrix{Int64}, Vector{Int64}, Vector{Int64}, UnitRange{Int64}}}, static::Bool)
    @ Base.Threads ./threadingconstructs.jl:196
  [2] macro expansion
    @ ./threadingconstructs.jl:213 [inlined]
  [3] num_open_closed_triangles
    @ ~/.julia/packages/ScHoLP/uvwJk/src/util.jl:414 [inlined]
  [4] test_open_closed_triangles1()
    @ Main ~/.julia/packages/ScHoLP/uvwJk/test/runtests.jl:64
  [5] test_simplicial_closure()
    @ Main ~/.julia/packages/ScHoLP/uvwJk/test/runtests.jl:284
  [6] all_tests()
    @ Main ~/.julia/packages/ScHoLP/uvwJk/test/runtests.jl:396
  [7] top-level scope
    @ ~/.julia/packages/ScHoLP/uvwJk/test/runtests.jl:414
  [8] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:304
  [9] top-level scope
    @ none:6
 [10] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:294
 [12] _start()
    @ Base ./client.jl:560
in expression starting at /home/pkgeval/.julia/packages/ScHoLP/uvwJk/test/runtests.jl:414

Testing failed after 83.11s

ERROR: LoadError: Package ScHoLP errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:328
 [12] _start()
    @ Base ./client.jl:560
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 202.09s: package tests unexpectedly errored