Package evaluation of SMLMSim on Julia 1.12.0-DEV.2153 (83dcbd426d*) started at 2025-03-31T12:43:34.724 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.19s ################################################################################ # Installation # Installing SMLMSim... Resolving package versions... Installed HDF5 ─ v0.16.16 Updating `~/.julia/environments/v1.12/Project.toml` [5a0a87e4] + SMLMSim v0.2.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [621f4979] + AbstractFFTs v1.5.0 [398f06c4] + AbstractLattices v0.3.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [67c07d97] + Automa v1.1.0 ⌃ [13072b0f] + AxisAlgorithms v1.0.1 [39de3d68] + AxisArrays v0.4.7 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [159f3aea] + Cairo v1.1.1 ⌅ [13f3f980] + CairoMakie v0.11.9 [aafaddc9] + CatIndices v0.2.2 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.1 ⌃ [35d6a980] + ColorSchemes v3.26.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌅ [c3611d14] + ColorVectorSpace v0.9.10 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.2 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [ed09eef8] + ComputationalResources v0.3.2 [187b0558] + ConstructionBase v1.5.8 [d38c429a] + Contour v0.6.3 [150eb455] + CoordinateTransformations v0.6.4 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [dc8bdbbb] + CustomUnitRanges v1.0.2 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌅ [927a84f5] + DelaunayTriangulation v0.8.12 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.49 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.8 [411431e0] + Extents v0.1.5 [4f61f5a4] + FFTViews v0.3.2 [7a1cc6ca] + FFTW v1.8.1 [5789e2e9] + FileIO v1.17.0 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.38 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.6 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 ⌅ [5c1252a2] + GeometryBasics v0.4.11 [a2bd30eb] + Graphics v1.1.3 [86223c79] + Graphs v1.12.0 ⌅ [3955a311] + GridLayoutBase v0.10.2 [42e2da0e] + Grisu v1.0.2 ⌅ [f67ccb44] + HDF5 v0.16.16 [2c695a8d] + HistogramThresholding v0.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 ⌃ [2803e5a7] + ImageAxes v0.6.11 ⌃ [c817782e] + ImageBase v0.1.5 [cbc4b850] + ImageBinarization v0.3.1 [f332f351] + ImageContrastAdjustment v0.3.12 ⌅ [a09fc81d] + ImageCore v0.9.4 [89d5987c] + ImageCorners v0.1.3 [51556ac3] + ImageDistances v0.2.17 ⌃ [6a3955dd] + ImageFiltering v0.7.6 ⌃ [82e4d734] + ImageIO v0.6.8 ⌃ [6218d12a] + ImageMagick v1.2.1 ⌃ [bc367c6b] + ImageMetadata v0.9.9 [787d08f9] + ImageMorphology v0.4.6 [2996bd0c] + ImageQualityIndexes v0.3.7 ⌃ [80713f31] + ImageSegmentation v1.8.1 [4e3cecfd] + ImageShow v0.3.8 [02fcd773] + ImageTransformations v0.10.1 ⌃ [916415d5] + Images v0.26.1 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.3 [18e54dd8] + IntegerMathUtils v0.1.2 [1d092043] + IntegralArrays v0.1.6 ⌅ [a98d9a8b] + Interpolations v0.14.0 [d1acc4aa] + IntervalArithmetic v0.22.26 [8197267c] + IntervalSets v0.7.10 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.54 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b835a17e] + JpegTurbo v0.1.6 [5ab0869b] + KernelDensity v0.6.9 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.1 [d3d80556] + LineSearches v7.3.0 [9b3f67b0] + LinearAlgebraX v0.2.10 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.172 [23992714] + MAT v0.10.7 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.15 ⌅ [ee78f7c6] + Makie v0.20.8 ⌅ [20f20a25] + MakieCore v0.7.3 [d125e4d3] + ManualMemory v0.1.8 [dbb5928d] + MappedArrays v0.4.2 ⌅ [0a4f8689] + MathTeXEngine v0.5.7 ⌅ [626554b9] + MetaGraphs v0.7.2 [de9ac726] + MicroscopePSFs v0.4.0 [e1d29d7a] + Missings v1.2.0 [7475f97c] + Mods v2.2.6 [e94cdb99] + MosaicViews v0.3.4 [3b2b4ff1] + Multisets v0.4.5 [d41bc354] + NLSolversBase v7.9.0 [77ba4419] + NaNMath v1.1.2 [b8a86587] + NearestNeighbors v0.4.21 [f09324ee] + Netpbm v1.1.1 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.16.0 [52e1d378] + OpenEXR v0.3.3 [429524aa] + Optim v1.11.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 [f57f5aa1] + PNGFiles v0.4.4 [19eb6ba3] + Packing v0.5.1 [5432bcbf] + PaddedViews v0.5.12 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 [2ae35dd2] + Permutations v0.4.23 [3bbf5609] + PikaParser v0.6.1 [eebad327] + PkgVersion v0.3.3 [995b91a9] + PlotUtils v1.4.3 [1d0040c9] + PolyesterWeave v0.2.2 [647866c9] + PolygonOps v0.1.2 [f27b6e38] + Polynomials v4.0.19 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.0 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [1fd47b50] + QuadGK v2.11.2 [94ee1d12] + Quaternions v0.7.6 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [dee08c22] + RegionTrees v0.3.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [286e9d63] + RingLists v0.2.9 [79098fc4] + Rmath v0.8.0 [6038ab10] + Rotations v1.7.1 [5eaf0fd0] + RoundingEmulator v0.2.1 [fdea26ae] + SIMD v3.7.1 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 ⌅ [5488f106] + SMLMData v0.1.2 [5a0a87e4] + SMLMSim v0.2.1 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 ⌅ [65257c39] + ShaderAbstractions v0.4.1 [992d4aef] + Showoff v1.0.3 [73760f76] + SignedDistanceFields v0.4.0 [55797a34] + SimpleGraphs v0.8.6 [ec83eff0] + SimplePartitions v0.3.3 [cc47b68c] + SimplePolynomials v0.2.18 [a6525b86] + SimpleRandom v0.3.2 [699a6c99] + SimpleTraits v0.9.4 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [45858cf5] + Sixel v0.1.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 ⌅ [c5dd0088] + StableHashTraits v1.3.4 [860ef19b] + StableRNGs v1.0.2 [cae243ae] + StackViews v0.1.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [892a3eda] + StringManipulation v0.4.1 ⌅ [09ab397b] + StructArrays v0.6.21 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [62fd8b95] + TensorCore v0.1.1 [8290d209] + ThreadingUtilities v0.5.2 ⌅ [731e570b] + TiffImages v0.10.2 [06e1c1a7] + TiledIteration v0.5.0 [3bb67fe8] + TranscodingStreams v0.11.3 [981d1d27] + TriplotBase v0.1.0 [9d95972d] + TupleTools v1.6.0 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [3d5dd08c] + VectorizationBase v0.21.71 [ecbed89c] + WeakKeyIdDicts v0.1.0 [ea10d353] + WeakRefStrings v1.4.2 ⌅ [efce3f68] + WoodburyMatrices v0.5.6 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [4e9b3aee] + CRlibm_jll v1.0.1+0 [83423d85] + Cairo_jll v1.18.4+0 [5ae413db] + EarCut_jll 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[44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/114e20044677badbc631ee6fdc80a67920561a29/build.log` Installation completed after 16.44s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 4 direct dependencies failed to precompile: SMLMData Failed to precompile SMLMData [5488f106-40b8-4660-84c5-84a168990d1b] to "/home/pkgeval/.julia/compiled/v1.12/SMLMData/jl_W31KkQ". WARNING: Constructor for type "Alg" was extended in `ImageFiltering` without explicit qualification or import. NOTE: Assumed "Alg" refers to `Algorithm.Alg`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Alg end`. Hint: To silence the warning, qualify `Alg` as `Algorithm.Alg` in the method signature or explicitly `import Algorithm: Alg`. Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_LvhkRU"). Fatal error: ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2219 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2227 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2497 [4] _require_prelocked @ ./loading.jl:2496 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2494 [7] require @ ./loading.jl:2492 [inlined] [8] #37 @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined] [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock) @ Base ./lock.jl:335 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [11] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [12] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [13] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [14] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [15] (::JLD2.var"#111#112")(path::String, ::IOStream) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [16] mktemp(fn::JLD2.var"#111#112", parent::String) @ Base.Filesystem ./file.jl:870 [17] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [18] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [19] macro expansion @ ~/.julia/packages/PrecompileTools/zOnGe/src/workloads.jl:67 [inlined] [20] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/zOnGe/src/workloads.jl:113 [inlined] [22] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:112 Stacktrace: [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [4] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [6] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [7] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [8] (::JLD2.var"#111#112")(path::String, ::IOStream) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [9] mktemp(fn::JLD2.var"#111#112", parent::String) @ Base.Filesystem ./file.jl:870 [10] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [11] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [12] macro expansion @ ~/.julia/packages/PrecompileTools/zOnGe/src/workloads.jl:67 [inlined] [13] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [14] macro expansion @ ~/.julia/packages/PrecompileTools/zOnGe/src/workloads.jl:113 [inlined] [15] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:112 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [17] IncludeInto @ ./Base.jl:305 [inlined] [18] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.12/JLD2/jl_OIgPEf". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] top-level scope @ ~/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:3 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MetaGraphs [626554b9-1ddb-594c-aa3c-2596fe9399a5] to "/home/pkgeval/.julia/compiled/v1.12/MetaGraphs/jl_2sxvHS". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] top-level scope @ ~/.julia/packages/ImageSegmentation/pYW1e/src/ImageSegmentation.jl:11 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/ImageSegmentation/pYW1e/src/ImageSegmentation.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile ImageSegmentation [80713f31-8817-5129-9cf8-209ff8fb23e1] to "/home/pkgeval/.julia/compiled/v1.12/ImageSegmentation/jl_Btv4Ts". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] include(mod::Module, _path::String) @ Base ./Base.jl:303 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [23] include_string @ ./loading.jl:2871 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [25] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/Images/y93Z0/src/Images.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Images [916415d5-f1e6-5110-898d-aaa5f9f070e0] to "/home/pkgeval/.julia/compiled/v1.12/Images/jl_3vFR9x". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] top-level scope @ ~/.julia/packages/SMLMData/MZW4w/src/SMLMData.jl:8 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/SMLMData/MZW4w/src/SMLMData.jl:1 in expression starting at stdin:5 MicroscopePSFs Failed to precompile MicroscopePSFs [de9ac726-48a4-48ab-84b0-1c03c7c18929] to "/home/pkgeval/.julia/compiled/v1.12/MicroscopePSFs/jl_SzyRb5". WARNING: Constructor for type "Int16" was extended in `VectorizationBase` without explicit qualification or import. NOTE: Assumed "Int16" refers to `Base.Int16`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Int16 end`. Hint: To silence the warning, qualify `Int16` as `Base.Int16` in the method signature or explicitly `import Base: Int16`. WARNING: Constructor for type "Int64" was extended in `VectorizationBase` without explicit qualification or import. NOTE: Assumed "Int64" refers to `Base.Int64`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Int64 end`. Hint: To silence the warning, qualify `Int64` as `Base.Int64` in the method signature or explicitly `import Base: Int64`. WARNING: Constructor for type "Int32" was extended in `VectorizationBase` without explicit qualification or import. NOTE: Assumed "Int32" refers to `Base.Int32`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Int32 end`. Hint: To silence the warning, qualify `Int32` as `Base.Int32` in the method signature or explicitly `import Base: Int32`. WARNING: Constructor for type "UInt8" was extended in `VectorizationBase` without explicit qualification or import. NOTE: Assumed "UInt8" refers to `Base.UInt8`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function UInt8 end`. Hint: To silence the warning, qualify `UInt8` as `Base.UInt8` in the method signature or explicitly `import Base: UInt8`. WARNING: Constructor for type "UInt16" was extended in `VectorizationBase` without explicit qualification or import. NOTE: Assumed "UInt16" refers to `Base.UInt16`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function UInt16 end`. Hint: To silence the warning, qualify `UInt16` as `Base.UInt16` in the method signature or explicitly `import Base: UInt16`. WARNING: Constructor for type "Float32" was extended in `VectorizationBase` without explicit qualification or import. NOTE: Assumed "Float32" refers to `Base.Float32`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Float32 end`. Hint: To silence the warning, qualify `Float32` as `Base.Float32` in the method signature or explicitly `import Base: Float32`. WARNING: Constructor for type "UInt64" was extended in `VectorizationBase` without explicit qualification or import. NOTE: Assumed "UInt64" refers to `Base.UInt64`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function UInt64 end`. Hint: To silence the warning, qualify `UInt64` as `Base.UInt64` in the method signature or explicitly `import Base: UInt64`. WARNING: Constructor for type "Bool" was extended in `VectorizationBase` without explicit qualification or import. NOTE: Assumed "Bool" refers to `Base.Bool`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Bool end`. Hint: To silence the warning, qualify `Bool` as `Base.Bool` in the method signature or explicitly `import Base: Bool`. WARNING: Constructor for type "Int8" was extended in `VectorizationBase` without explicit qualification or import. NOTE: Assumed "Int8" refers to `Base.Int8`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Int8 end`. Hint: To silence the warning, qualify `Int8` as `Base.Int8` in the method signature or explicitly `import Base: Int8`. WARNING: Constructor for type "Float64" was extended in `VectorizationBase` without explicit qualification or import. NOTE: Assumed "Float64" refers to `Base.Float64`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Float64 end`. Hint: To silence the warning, qualify `Float64` as `Base.Float64` in the method signature or explicitly `import Base: Float64`. WARNING: Constructor for type "UInt32" was extended in `VectorizationBase` without explicit qualification or import. NOTE: Assumed "UInt32" refers to `Base.UInt32`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function UInt32 end`. Hint: To silence the warning, qualify `UInt32` as `Base.UInt32` in the method signature or explicitly `import Base: UInt32`. WARNING: Constructor for type "Float16" was extended in `VectorizationBase` without explicit qualification or import. NOTE: Assumed "Float16" refers to `Base.Float16`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Float16 end`. Hint: To silence the warning, qualify `Float16` as `Base.Float16` in the method signature or explicitly `import Base: Float16`. WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:454 declares type variable N but does not use it. WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:457 declares type variable N but does not use it. WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:37 declares type variable pad but does not use it. WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:60 declares type variable pad but does not use it. WARNING: method definition for interpolate! at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/deprecations.jl:30 declares type variable TWeights but does not use it. Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_owWX5h"). Fatal error: ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2219 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2227 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2497 [4] _require_prelocked @ ./loading.jl:2496 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2494 [7] require @ ./loading.jl:2492 [inlined] [8] #37 @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined] [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock) @ Base ./lock.jl:335 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [11] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [12] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [13] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [14] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [15] (::JLD2.var"#111#112")(path::String, ::IOStream) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [16] mktemp(fn::JLD2.var"#111#112", parent::String) @ Base.Filesystem ./file.jl:870 [17] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [18] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [19] macro expansion @ ~/.julia/packages/PrecompileTools/zOnGe/src/workloads.jl:67 [inlined] [20] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/zOnGe/src/workloads.jl:113 [inlined] [22] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:112 Stacktrace: [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [4] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [6] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [7] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [8] (::JLD2.var"#111#112")(path::String, ::IOStream) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [9] mktemp(fn::JLD2.var"#111#112", parent::String) @ Base.Filesystem ./file.jl:870 [10] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [11] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [12] macro expansion @ ~/.julia/packages/PrecompileTools/zOnGe/src/workloads.jl:67 [inlined] [13] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [14] macro expansion @ ~/.julia/packages/PrecompileTools/zOnGe/src/workloads.jl:113 [inlined] [15] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:112 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [17] IncludeInto @ ./Base.jl:305 [inlined] [18] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.12/JLD2/jl_94aOK5". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] top-level scope @ ~/.julia/packages/MicroscopePSFs/CN4NF/src/MicroscopePSFs.jl:8 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/MicroscopePSFs/CN4NF/src/MicroscopePSFs.jl:1 in expression starting at stdin:5 Images Failed to precompile Images [916415d5-f1e6-5110-898d-aaa5f9f070e0] to "/home/pkgeval/.julia/compiled/v1.12/Images/jl_zhogXd". WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:454 declares type variable N but does not use it. WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:457 declares type variable N but does not use it. WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:37 declares type variable pad but does not use it. WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:60 declares type variable pad but does not use it. WARNING: method definition for interpolate! at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/deprecations.jl:30 declares type variable TWeights but does not use it. WARNING: Constructor for type "Alg" was extended in `ImageFiltering` without explicit qualification or import. NOTE: Assumed "Alg" refers to `Algorithm.Alg`. This behavior is deprecated and may differ in future versions.` NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Alg end`. Hint: To silence the warning, qualify `Alg` as `Algorithm.Alg` in the method signature or explicitly `import Algorithm: Alg`. Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_87WZg0"). Fatal error: ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2219 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2227 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2497 [4] _require_prelocked @ ./loading.jl:2496 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2494 [7] require @ ./loading.jl:2492 [inlined] [8] #37 @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined] [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock) @ Base ./lock.jl:335 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [11] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [12] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [13] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [14] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [15] (::JLD2.var"#111#112")(path::String, ::IOStream) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [16] mktemp(fn::JLD2.var"#111#112", parent::String) @ Base.Filesystem ./file.jl:870 [17] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [18] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [19] macro expansion @ ~/.julia/packages/PrecompileTools/zOnGe/src/workloads.jl:67 [inlined] [20] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/zOnGe/src/workloads.jl:113 [inlined] [22] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:112 Stacktrace: [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [4] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [6] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [7] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [8] (::JLD2.var"#111#112")(path::String, ::IOStream) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [9] mktemp(fn::JLD2.var"#111#112", parent::String) @ Base.Filesystem ./file.jl:870 [10] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [11] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [12] macro expansion @ ~/.julia/packages/PrecompileTools/zOnGe/src/workloads.jl:67 [inlined] [13] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [14] macro expansion @ ~/.julia/packages/PrecompileTools/zOnGe/src/workloads.jl:113 [inlined] [15] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:112 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [17] IncludeInto @ ./Base.jl:305 [inlined] [18] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.12/JLD2/jl_FsizIp". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] top-level scope @ ~/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:3 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MetaGraphs [626554b9-1ddb-594c-aa3c-2596fe9399a5] to "/home/pkgeval/.julia/compiled/v1.12/MetaGraphs/jl_HZHQ1m". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] top-level scope @ ~/.julia/packages/ImageSegmentation/pYW1e/src/ImageSegmentation.jl:11 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/ImageSegmentation/pYW1e/src/ImageSegmentation.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile ImageSegmentation [80713f31-8817-5129-9cf8-209ff8fb23e1] to "/home/pkgeval/.julia/compiled/v1.12/ImageSegmentation/jl_Ir4zdy". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] include(mod::Module, _path::String) @ Base ./Base.jl:303 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [23] include_string @ ./loading.jl:2871 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [25] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/Images/y93Z0/src/Images.jl:1 in expression starting at stdin:5 SMLMSim Failed to precompile SMLMSim [5a0a87e4-02d4-41f5-bf26-b8c94c784a04] to "/home/pkgeval/.julia/compiled/v1.12/SMLMSim/jl_5mdczv". ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1060 running 1 of 1 signal (10): User defined signal 1 symtab_lookup at /source/src/symbol.c:59 _jl_symbol at /source/src/symbol.c:88 jl_read_symbols at /source/src/staticdata.c:2067 [inlined] jl_restore_system_image_from_stream_ at /source/src/staticdata.c:3814 jl_restore_package_image_from_stream at /source/src/staticdata.c:4292 jl_restore_incremental_from_buf at /source/src/staticdata.c:4361 ijl_restore_package_image_from_file at /source/src/staticdata.c:4453 #_include_from_serialized#863 at ./loading.jl:1283 _include_from_serialized at ./loading.jl:1246 [inlined] _include_from_serialized at ./loading.jl:1246 [inlined] #_require_search_from_serialized#880 at ./loading.jl:2111 _require_search_from_serialized at ./loading.jl:2018 jfptr__require_search_from_serialized_109276.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 __require_prelocked at ./loading.jl:2636 _require_prelocked at ./loading.jl:2502 macro expansion at ./loading.jl:2430 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2395 jfptr___require_62164.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 jl_apply at /source/src/julia.h:2347 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:872 require at ./loading.jl:2371 jfptr_require_62219.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 jl_apply at /source/src/julia.h:2347 [inlined] call_require at /source/src/toplevel.c:510 [inlined] eval_import_path at /source/src/toplevel.c:548 jl_toplevel_eval_flex at /source/src/toplevel.c:842 ijl_toplevel_eval at /source/src/toplevel.c:1044 eval_body at /source/src/interpreter.c:654 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_eval_module_expr at /source/src/toplevel.c:210 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:826 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:489 include_string at ./loading.jl:2861 _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 _include at ./loading.jl:2921 include at ./Base.jl:303 include_package_for_output at ./loading.jl:3015 jfptr_include_package_for_output_60087.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 jl_apply at /source/src/julia.h:2347 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:489 include_string at ./loading.jl:2861 include_string at ./loading.jl:2871 [inlined] exec_options at ./client.jl:326 _start at ./client.jl:560 jfptr__start_58283.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 jl_apply at /source/src/julia.h:2347 [inlined] true_main at /source/src/jlapi.c:951 jl_repl_entrypoint at /source/src/jlapi.c:1111 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x79e533b0e249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Error: Profile printing listener crashed │ exception = │ This interactive function requires a stdlib to be loaded, and package code should instead use it directly from that stdlib. │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] require_stdlib(package_uuidkey::Base.PkgId, ext::Nothing) │ @ Base ./loading.jl:2796 │ [3] require_stdlib │ @ ./loading.jl:2794 [inlined] │ [4] macro expansion │ @ ./some.jl:158 [inlined] │ [5] profile_printing_listener(cond::Base.AsyncCondition) │ @ Base ./Base.jl:330 │ [6] (::Base.var"#start_profile_listener##0#start_profile_listener##1"{Base.AsyncCondition})() │ @ Base ./Base.jl:349 └ @ Base Base.jl:340 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1056 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #632 at ./asyncevent.jl:359 jfptr_YY.632_67428.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 jl_apply at /source/src/julia.h:2347 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Error: Profile printing listener crashed │ exception = │ This interactive function requires a stdlib to be loaded, and package code should instead use it directly from that stdlib. │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] require_stdlib(package_uuidkey::Base.PkgId, ext::Nothing) │ @ Base ./loading.jl:2796 │ [3] require_stdlib │ @ ./loading.jl:2794 [inlined] │ [4] macro expansion │ @ ./some.jl:158 [inlined] │ [5] profile_printing_listener(cond::Base.AsyncCondition) │ @ Base ./Base.jl:330 │ [6] (::Base.var"#start_profile_listener##0#start_profile_listener##1"{Base.AsyncCondition})() │ @ Base ./Base.jl:349 └ @ Base Base.jl:340 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1052 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #632 at ./asyncevent.jl:359 jfptr_YY.632_67428.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 jl_apply at /source/src/julia.h:2347 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Error: Profile printing listener crashed │ exception = │ This interactive function requires a stdlib to be loaded, and package code should instead use it directly from that stdlib. │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] require_stdlib(package_uuidkey::Base.PkgId, ext::Nothing) │ @ Base ./loading.jl:2796 │ [3] require_stdlib │ @ ./loading.jl:2794 [inlined] │ [4] macro expansion │ @ ./some.jl:158 [inlined] │ [5] profile_printing_listener(cond::Base.AsyncCondition) │ @ Base ./Base.jl:330 │ [6] (::Base.var"#start_profile_listener##0#start_profile_listener##1"{Base.AsyncCondition})() │ @ Base ./Base.jl:349 └ @ Base Base.jl:340 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1048 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #632 at ./asyncevent.jl:359 jfptr_YY.632_67428.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 jl_apply at /source/src/julia.h:2347 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_dqoCET"). Fatal error: ┌ Error: Profile printing listener crashed │ exception = │ This interactive function requires a stdlib to be loaded, and package code should instead use it directly from that stdlib. │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] require_stdlib(package_uuidkey::Base.PkgId, ext::Nothing) │ @ Base ./loading.jl:2796 │ [3] require_stdlib │ @ ./loading.jl:2794 [inlined] │ [4] macro expansion │ @ ./some.jl:158 [inlined] │ [5] profile_printing_listener(cond::Base.AsyncCondition) │ @ Base ./Base.jl:330 │ [6] (::Base.var"#start_profile_listener##0#start_profile_listener##1"{Base.AsyncCondition})() │ @ Base ./Base.jl:349 └ @ Base Base.jl:340 ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2219 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2227 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2497 [4] _require_prelocked @ ./loading.jl:2496 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2494 [7] require @ ./loading.jl:2492 [inlined] [8] #37 @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined] [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock) @ Base ./lock.jl:335 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [11] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [12] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [13] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [14] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [15] (::JLD2.var"#111#112")(path::String, ::IOStream) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [16] mktemp(fn::JLD2.var"#111#112", parent::String) @ Base.Filesystem ./file.jl:870 [17] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [18] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [19] macro expansion @ ~/.julia/packages/PrecompileTools/zOnGe/src/workloads.jl:67 [inlined] [20] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/zOnGe/src/workloads.jl:113 [inlined] [22] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:112 Stacktrace: [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [4] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [6] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [7] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [8] (::JLD2.var"#111#112")(path::String, ::IOStream) @ JLD2 ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [9] mktemp(fn::JLD2.var"#111#112", parent::String) @ Base.Filesystem ./file.jl:870 [10] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [11] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [12] macro expansion @ ~/.julia/packages/PrecompileTools/zOnGe/src/workloads.jl:67 [inlined] [13] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [14] macro expansion @ ~/.julia/packages/PrecompileTools/zOnGe/src/workloads.jl:113 [inlined] [15] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:112 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [17] IncludeInto @ ./Base.jl:305 [inlined] [18] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.12/JLD2/jl_wSDBUe". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] top-level scope @ ~/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:3 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MetaGraphs [626554b9-1ddb-594c-aa3c-2596fe9399a5] to "/home/pkgeval/.julia/compiled/v1.12/MetaGraphs/jl_2ILr2E". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] top-level scope @ ~/.julia/packages/ImageSegmentation/pYW1e/src/ImageSegmentation.jl:11 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/ImageSegmentation/pYW1e/src/ImageSegmentation.jl:1 in expression starting at stdin:5 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1044 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 #632 at ./asyncevent.jl:359 jfptr_YY.632_67428.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 jl_apply at /source/src/julia.h:2347 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ERROR: LoadError: ┌ Error: Profile printing listener crashed │ exception = │ This interactive function requires a stdlib to be loaded, and package code should instead use it directly from that stdlib. │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] require_stdlib(package_uuidkey::Base.PkgId, ext::Nothing) │ @ Base ./loading.jl:2796 │ [3] require_stdlib │ @ ./loading.jl:2794 [inlined] │ [4] macro expansion │ @ ./some.jl:158 [inlined] │ [5] profile_printing_listener(cond::Base.AsyncCondition) │ @ Base ./Base.jl:330 │ [6] (::Base.var"#start_profile_listener##0#start_profile_listener##1"{Base.AsyncCondition})() │ @ Base ./Base.jl:349 └ @ Base Base.jl:340 Failed to precompile ImageSegmentation [80713f31-8817-5129-9cf8-209ff8fb23e1] to "/home/pkgeval/.julia/compiled/v1.12/ImageSegmentation/jl_bWXL5u". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] include(mod::Module, _path::String) @ Base ./Base.jl:303 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [23] include_string @ ./loading.jl:2871 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [25] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/Images/y93Z0/src/Images.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Images [916415d5-f1e6-5110-898d-aaa5f9f070e0] to "/home/pkgeval/.julia/compiled/v1.12/Images/jl_XJczlI". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] top-level scope @ ~/.julia/packages/SMLMData/MZW4w/src/SMLMData.jl:8 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/SMLMData/MZW4w/src/SMLMData.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SMLMData [5488f106-40b8-4660-84c5-84a168990d1b] to "/home/pkgeval/.julia/compiled/v1.12/SMLMData/jl_KXPJUe". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] top-level scope @ ~/.julia/packages/SMLMSim/UPh16/src/SMLMSim.jl:3 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/SMLMSim/UPh16/src/SMLMSim.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 2704.05s ################################################################################ # Testing # ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 1 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7c1484e1ef14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#398 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:329 #start_profile_listener##0 at ./Base.jl:349 jfptr_YY.start_profile_listenerYY.YY.0_54285.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 jl_apply at /source/src/julia.h:2347 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) _ZN4llvm27MachineInstrExpressionTrait12getHashValueERKPKNS_12MachineInstrE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZNK4llvm12DenseMapBaseINS_8DenseMapIPNS_12MachineInstrEPNS_18ScopedHashTableValIS3_jEENS_27MachineInstrExpressionTraitENS_6detail12DenseMapPairIS3_S6_EEEES3_S6_S7_SA_E15LookupBucketForIS3_EEbRKT_RPKSA_ at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_110MachineCSE15ProcessBlockCSEEPN4llvm17MachineBasicBlockE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_110MachineCSE10PerformCSEEPN4llvm15DomTreeNodeBaseINS1_17MachineBasicBlockEEE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN12_GLOBAL__N_110MachineCSE20runOnMachineFunctionERN4llvm15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1686 addModule at /source/src/jitlayers.cpp:2162 jl_compile_codeinst_now at /source/src/jitlayers.cpp:626 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:949 jl_compile_method_internal at /source/src/gf.c:2972 _jl_invoke at /source/src/gf.c:3454 [inlined] ijl_apply_generic at /source/src/gf.c:3662 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:153 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 unknown function (ip: 0x7c147b37491f) at (unknown file) _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 jl_apply at /source/src/julia.h:2347 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 eval_body at /source/src/interpreter.c:557 eval_body at /source/src/interpreter.c:557 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:489 include_string at ./loading.jl:2861 _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 _include at ./loading.jl:2921 include at ./Base.jl:303 exec_options at ./client.jl:328 _start at ./client.jl:560 jfptr__start_58283.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3462 [inlined] ijl_apply_generic at /source/src/gf.c:3662 jl_apply at /source/src/julia.h:2347 [inlined] true_main at /source/src/jlapi.c:951 jl_repl_entrypoint at /source/src/jlapi.c:1111 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7c1484dc0249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== Testing SMLMSim ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x00007c1477200010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:560 _start() ╎ 1 @Base/client.jl:328 exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:303 include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2921 _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2861 include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 1 @Pkg/src/API.jl:151 kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:151 #test#81 ╎ ╎ 1 @Pkg/src/API.jl:152 test ╎ ╎ 1 @Pkg/src/API.jl:152 test(pkgs::Vector{String}; kwargs::Base.Pairs… ╎ ╎ 1 @Pkg/src/API.jl:153 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:164 test(pkgs::Vector{PackageSpec}; io::IOConte… ╎ ╎ ╎ 1 @Pkg/src/API.jl:465 kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:486 test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 @Pkg/…Operations.jl:2220 test ╎ ╎ ╎ 1 @Pkg/…perations.jl:2226 test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 @Pkg/src/API.jl:1177 instantiate ╎ ╎ ╎ ╎ 1 @Pkg/src/API.jl:1225 #instantiate#281 ╎ ╎ ╎ ╎ 1 @Pkg/…perations.jl:181 is_instantiated ╎ ╎ ╎ ╎ 1 @Pkg/…erations.jl:201 #is_instantiated#21 ╎ ╎ ╎ ╎ 1 @Base/…ducedim.jl:992 all ╎ ╎ ╎ ╎ ╎ 1 @Base/…ucedim.jl:992 #all#753 ╎ ╎ ╎ ╎ ╎ 1 @Base/anyall.jl:197 _all ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…rations.jl:201 #26 ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…ations.jl:2550 is_package_downloaded ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:2555 #is_package_downloaded#216 ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:996 check_artifacts_downloaded ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:997 #check_artifacts_downloaded#… ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…tions.jl:796 collect_artifacts ╎ ╎ ╎ ╎ ╎ ╎ 1 @Pkg/…ions.jl:810 #collect_artifacts#46 ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ess.jl:481 read ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…am.jl:962 read(stream::Base.PipeEndp… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…am.jl:416 wait_readnb(x::Base.PipeE… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…on.jl:136 wait ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…on.jl:141 wait(c::Base.GenericCon… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1199 wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…sk.jl:1187 poptask(W::Base.Intr… Thread 2 (default) Task 0x00007c1477200100 Total snapshots: 1. Utilization: 0% ╎1 @Base/Base.jl:349 (::Base.var"#start_profile_listener##0#start_profile_lis… ╎ 1 @Base/Base.jl:329 profile_printing_listener(cond::Base.AsyncCondition) ╎ 1 @Base/asyncevent.jl:185 _trywait(t::Base.AsyncCondition) ╎ 1 @Base/condition.jl:136 wait ╎ 1 @Base/condition.jl:141 wait(c::Base.GenericCondition{Base.Threads.Spin… ╎ 1 @Base/task.jl:1199 wait() ╎ ╎ 1 @Base/task.jl:1187 poptask(W::Base.IntrusiveLinkedListSynchronized{T… Status `/tmp/jl_TMxouj/Project.toml` ⌅ [13f3f980] CairoMakie v0.11.9 [31c24e10] Distributions v0.25.118 ⌃ [916415d5] Images v0.26.1 [de9ac726] MicroscopePSFs v0.4.0 ⌅ [5488f106] SMLMData v0.1.2 [5a0a87e4] SMLMSim v0.2.1 [37e2e46d] LinearAlgebra v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_TMxouj/Manifest.toml` [47edcb42] ADTypes v1.14.0 [621f4979] AbstractFFTs v1.5.0 [398f06c4] AbstractLattices v0.3.1 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [67c07d97] Automa v1.1.0 ⌃ [13072b0f] AxisAlgorithms v1.0.1 [39de3d68] AxisArrays v0.4.7 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 ⌅ [13f3f980] CairoMakie v0.11.9 [aafaddc9] CatIndices v0.2.2 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.1 ⌃ [35d6a980] ColorSchemes v3.26.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌅ [c3611d14] ColorVectorSpace v0.9.10 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.0.2 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [ed09eef8] ComputationalResources v0.3.2 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [150eb455] CoordinateTransformations v0.6.4 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [dc8bdbbb] CustomUnitRanges v1.0.2 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 ⌅ [927a84f5] DelaunayTriangulation v0.8.12 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.49 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.8 [411431e0] Extents v0.1.5 [4f61f5a4] FFTViews v0.3.2 [7a1cc6ca] FFTW v1.8.1 [5789e2e9] FileIO v1.17.0 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 ⌅ [f6369f11] ForwardDiff v0.10.38 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.6 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 ⌅ [5c1252a2] GeometryBasics v0.4.11 [a2bd30eb] Graphics v1.1.3 [86223c79] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [1128] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/SMLMSim/UPh16/test/runtests.jl:1 unknown function (ip: 0x7e9923b03f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 poptask at ./task.jl:1187 wait at ./task.jl:1199 PkgEval terminated after 2762.12s: test duration exceeded the time limit