Package evaluation of RegressionDynamicCausalModeling on Julia 1.12.0-DEV.2153 (83dcbd426d*) started at 2025-03-31T11:39:36.302 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.39s ################################################################################ # Installation # Installing RegressionDynamicCausalModeling... Resolving package versions... Installed MPICH_jll ─────────────────────── v4.3.0+1 Installed libaec_jll ────────────────────── v1.1.3+0 Installed Rmath ─────────────────────────── v0.8.0 Installed oneTBB_jll ────────────────────── v2022.0.0+0 Installed HypergeometricFunctions ───────── v0.3.28 Installed IrrationalConstants ───────────── v0.2.4 Installed Scratch ───────────────────────── v1.2.1 Installed Preferences ───────────────────── v1.4.3 Installed PtrArrays ─────────────────────── v1.3.0 Installed Hwloc_jll ─────────────────────── v2.12.0+0 Installed StatsFuns ─────────────────────── v1.3.2 Installed MicrosoftMPI_jll ──────────────── v10.1.4+3 Installed FFTW ──────────────────────────── v1.8.1 Installed PDMats ────────────────────────── v0.11.33 Installed DataAPI ───────────────────────── v1.16.0 Installed SpecialFunctions ──────────────── v2.5.0 Installed OpenMPI_jll ───────────────────── v5.0.7+1 Installed MKL_jll ───────────────────────── v2025.0.1+1 Installed JLLWrappers ───────────────────── v1.7.0 Installed ProgressMeter ─────────────────── v1.10.2 Installed OrderedCollections ────────────── v1.8.0 Installed AbstractFFTs ──────────────────── v1.5.0 Installed PrecompileTools ───────────────── v1.3.0 Installed RegressionDynamicCausalModeling ─ v0.1.4 Installed MPIPreferences ────────────────── v0.1.11 Installed Reexport ──────────────────────── v1.2.2 Installed TranscodingStreams ────────────── v0.11.3 Installed QuadGK ────────────────────────── v2.11.2 Installed FillArrays ────────────────────── v1.13.0 Installed Rmath_jll ─────────────────────── v0.5.1+0 Installed MPItrampoline_jll ─────────────── v5.5.3+0 Installed LogExpFunctions ───────────────── v0.3.29 Installed Requires ──────────────────────── v1.3.1 Installed Statistics ────────────────────── v1.11.1 Installed DataStructures ────────────────── v0.18.22 Installed IntelOpenMP_jll ───────────────── v2025.0.4+0 Installed FFTW_jll ──────────────────────── v3.3.10+3 Installed StatsAPI ──────────────────────── v1.7.0 Installed AliasTables ───────────────────── v1.1.3 Installed MAT ───────────────────────────── v0.10.7 Installed Compat ────────────────────────── v4.16.0 Installed BufferedStreams ───────────────── v1.2.2 Installed OpenSpecFun_jll ───────────────── v0.5.6+0 Installed CodecZlib ─────────────────────── v0.7.8 Installed Distributions ─────────────────── v0.25.118 Installed Missings ──────────────────────── v1.2.0 Installed HDF5_jll ──────────────────────── v1.14.6+0 Installed SortingAlgorithms ─────────────── v1.2.1 Installed DocStringExtensions ───────────── v0.9.4 Installed StatsBase ─────────────────────── v0.34.4 Installed HDF5 ──────────────────────────── v0.17.2 Installing 9 artifacts Installed artifact libaec 96.2 KiB Installed artifact FFTW 2.2 MiB Installed artifact MPICH 3.3 MiB Installed artifact oneTBB 435.6 KiB Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Hwloc 3.5 MiB Installed artifact rDCMdata 2.2 MiB Installed artifact HDF5 5.7 MiB Updating `~/.julia/environments/v1.12/Project.toml` [4fb452e6] + RegressionDynamicCausalModeling v0.1.4 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [66dad0bd] + AliasTables v1.1.3 [e1450e63] + BufferedStreams v1.2.2 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [7a1cc6ca] + FFTW v1.8.1 [1a297f60] + FillArrays v1.13.0 [f67ccb44] + HDF5 v0.17.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [23992714] + MAT v0.10.7 [3da0fdf6] + MPIPreferences v0.1.11 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 [aea7be01] + PrecompileTools v1.3.0 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [4fb452e6] + RegressionDynamicCausalModeling v0.1.4 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [6c6a2e73] + Scratch v1.2.1 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [3bb67fe8] + TranscodingStreams v0.11.3 [f5851436] + FFTW_jll v3.3.10+3 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [856f044c] + MKL_jll v2025.0.1+1 [7cb0a576] + MPICH_jll v4.3.0+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.7+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [477f73a3] + libaec_jll v1.1.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Building RegressionDynamicCausalModeling → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/cfcaa1acb988d8e175767e4665e32042b1998f2d/build.log` Installation completed after 27.8s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6864.2 ms ✓ TestEnv 1 dependency successfully precompiled in 9 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 463.73s ################################################################################ # Testing # Testing RegressionDynamicCausalModeling Status `/tmp/jl_rmJT2b/Project.toml` [4c88cf16] Aqua v0.8.11 [c3a54625] JET v0.10.0 [98e50ef6] JuliaFormatter v1.0.62 [23992714] MAT v0.10.7 [4fb452e6] RegressionDynamicCausalModeling v0.1.4 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_rmJT2b/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.11 [e1450e63] BufferedStreams v1.2.2 [00ebfdb7] CSTParser v3.4.3 [da1fd8a2] CodeTracking v1.3.6 [944b1d66] CodecZlib v0.7.8 ⌅ [a80b9123] CommonMark v0.8.16 [34da2185] Compat v4.16.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [7a1cc6ca] FFTW v1.8.1 [1a297f60] FillArrays v1.13.0 [c27321d9] Glob v1.3.1 [f67ccb44] HDF5 v0.17.2 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.4 [c3a54625] JET v0.10.0 [692b3bcd] JLLWrappers v1.7.0 [98e50ef6] JuliaFormatter v1.0.62 [aa1ae85d] JuliaInterpreter v0.9.42 ⌅ [70703baa] JuliaSyntax v0.4.10 [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.1.0 [23992714] MAT v0.10.7 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.15 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [aea7be01] PrecompileTools v1.3.0 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [4fb452e6] RegressionDynamicCausalModeling v0.1.4 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6c6a2e73] Scratch v1.2.1 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [0796e94c] Tokenize v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [f5851436] FFTW_jll v3.3.10+3 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.0+0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [856f044c] MKL_jll v2025.0.1+1 [7cb0a576] MPICH_jll v4.3.0+1 [f1f71cc9] MPItrampoline_jll v5.5.3+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.7+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [477f73a3] libaec_jll v1.1.3+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Code linting: JET-test failed at /home/pkgeval/.julia/packages/JET/RhfVv/src/JETBase.jl:1047 Expression: (JET.report_package)(RegressionDynamicCausalModeling; toplevel_logger = nothing, target_defined_modules = true) ═════ 13 toplevel errors found ═════ ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:49 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/structs.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:50 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/create_regressors.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:51 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/utils/load_DCM.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:52 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/utils/dcm_euler_integration.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:53 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/utils/dcm_print.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:54 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/utils/SPM_compat.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:55 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/generate_BOLD.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:56 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/get_priors.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:57 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/rigid_inversion.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:58 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/invert_rDCM.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:59 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/predict.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:60 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/sparse_inversion.jl": No such file or directory └─────────────────────── ┌ @ /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/src/RegressionDynamicCausalModeling.jl:61 │ SystemError: opening file "/home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/precompile.jl": No such file or directory └─────────────────────── Test Summary: | Pass Fail Total Time rDCM tests | 276 1 277 10m04.7s Code formatting | 1 1 22.3s Code linting | 1 1 2m04.2s Code quality | 9 9 1m20.4s Utils | 54 54 1m09.3s save/load DCM | 21 21 19.5s pretty print | 16 16 18.1s SPM compatibility | 17 17 9.5s Constructors | 141 141 1.7s Create HRF | 4 4 0.1s Generate synthetic data | 15 15 1m02.2s linear | 2 2 13.9s special cases | 4 4 31.4s bilinear | 2 2 7.6s nonlinear | 2 2 8.2s Priors | 25 25 6.6s Prior param | 10 10 0.0s Sample prior | 9 9 0.0s Rigid prior | 6 6 2.6s Create regressors | 3 3 1.4s Model inversion | 21 21 13.6s rigid rDCM | 7 7 1.7s sparse rDCM (fix C matrix) | 6 6 3.9s sparse rDCM (prune C matrix) | 6 6 5.1s Prediction | 3 3 19.1s rigid rDCM | 1 1 6.8s sparse rDCM | 1 1 11.2s error handling | 1 1 0.2s RNG of the outermost testset: Xoshiro(0x8d89182881ea9863, 0x93874f9ad1bfefec, 0xfd8940d8b92641ff, 0xb1271030c9397471, 0x13debc8a157be139) ERROR: LoadError: Some tests did not pass: 276 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/RegressionDynamicCausalModeling/EgHu2/test/runtests.jl:11 Testing failed after 683.86s ERROR: LoadError: Package RegressionDynamicCausalModeling errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1253.16s: package has test failures