Package evaluation of PALEOsediment on Julia 1.12.0-DEV.2153 (83dcbd426d*) started at 2025-03-31T12:25:54.247 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.69s ################################################################################ # Installation # Installing PALEOsediment... Resolving package versions... Installed libaec_jll ────────────────── v1.1.3+0 Installed Blosc_jll ─────────────────── v1.21.7+0 Installed IrrationalConstants ───────── v0.2.4 Installed MPICH_jll ─────────────────── v4.3.0+1 Installed SIMD ──────────────────────── v3.7.1 Installed Crayons ───────────────────── v4.1.1 Installed Adapt ─────────────────────── v4.3.0 Installed PALEOaqchem ───────────────── v0.3.19 Installed XML2_jll ──────────────────── v2.13.6+1 Installed libzip_jll ────────────────── v1.11.3+0 Installed LRUCache ──────────────────── v1.6.2 Installed OffsetArrays ──────────────── v1.16.0 Installed Zstd_jll ──────────────────── v1.5.7+1 Installed PrettyTables ──────────────── v2.4.0 Installed ArnoldiMethod ─────────────── v0.4.0 Installed PALEOsediment ─────────────── v0.3.4 Installed TableTraits ───────────────── v1.0.1 Installed JSON ──────────────────────── v0.21.4 Installed Revise ────────────────────── v3.7.3 Installed Preferences ───────────────── v1.4.3 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed Hwloc_jll ─────────────────── v2.12.0+0 Installed Inflate ───────────────────── v0.1.5 Installed LoweredCodeUtils ──────────── v3.1.0 Installed SpecialFunctions ──────────── v2.5.0 Installed JuliaInterpreter ──────────── v0.9.42 Installed BenchmarkTools ────────────── v1.6.0 Installed Infiltrator ───────────────── v1.8.6 Installed SentinelArrays ────────────── v1.4.8 Installed Tables ────────────────────── v1.12.0 Installed Parsers ───────────────────── v2.8.1 Installed XZ_jll ────────────────────── v5.6.4+1 Installed MicrosoftMPI_jll ──────────── v10.1.4+3 Installed DataAPI ───────────────────── v1.16.0 Installed OpenMPI_jll ───────────────── v5.0.7+1 Installed PooledArrays ──────────────── v1.4.3 Installed InlineStrings ─────────────── v1.4.3 Installed StringEncodings ───────────── v0.3.7 Installed JLLWrappers ───────────────── v1.7.0 Installed TimerOutputs ──────────────── v0.5.28 Installed StaticArraysCore ──────────── v1.4.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed PrecompileTools ───────────── v1.3.0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed DataValueInterfaces ───────── v1.0.0 Installed StaticArrays ──────────────── v1.9.13 Installed ConstructionBase ──────────── v1.5.8 Installed StructArrays ──────────────── v0.7.0 Installed OrderedCollections ────────── v1.8.0 Installed LaTeXStrings ──────────────── v1.4.0 Installed TranscodingStreams ────────── v0.11.3 Installed ChainRulesCore ────────────── v1.25.1 Installed SLEEF_jll ─────────────────── v3.7.0+0 Installed InvertedIndices ───────────── v1.3.1 Installed NCDatasets ────────────────── v0.14.7 Installed MPIPreferences ────────────── v0.1.11 Installed Reexport ──────────────────── v1.2.2 Installed MPItrampoline_jll ─────────── v5.5.3+0 Installed MAT ───────────────────────── v0.10.7 Installed Lz4_jll ───────────────────── v1.10.1+0 Installed Interpolations ────────────── v0.15.1 Installed Graphs ────────────────────── v1.12.0 Installed Statistics ────────────────── v1.11.1 Installed DataFrames ────────────────── v1.7.0 Installed CodeTracking ──────────────── v1.3.6 Installed Ratios ────────────────────── v0.4.5 Installed AxisAlgorithms ────────────── v1.1.0 Installed LogExpFunctions ───────────── v0.3.29 Installed CommonDataModel ───────────── v0.3.8 Installed Requires ──────────────────── v1.3.1 Installed BufferedStreams ───────────── v1.2.2 Installed CFTime ────────────────────── v0.1.4 Installed DataStructures ────────────── v0.18.22 Installed ExprTools ─────────────────── v0.1.10 Installed MacroTools ────────────────── v0.5.15 Installed Compat ────────────────────── v4.16.0 Installed PALEOboxes ────────────────── v0.22.4 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed UnsafeAtomics ─────────────── v0.3.0 Installed NetCDF_jll ────────────────── v401.900.300+0 Installed HDF5 ──────────────────────── v0.17.2 Installed CodecZlib ─────────────────── v0.7.8 Installed WoodburyMatrices ──────────── v1.0.0 Installed SimpleTraits ──────────────── v0.9.4 Installed Missings ──────────────────── v1.2.0 Installed StringManipulation ────────── v0.4.1 Installed HDF5_jll ──────────────────── v1.14.6+0 Installed SortingAlgorithms ─────────── v1.2.1 Installed Atomix ────────────────────── v1.1.1 Installed YAML ──────────────────────── v0.4.12 Installed DiskArrays ────────────────── v0.4.11 Installed DocStringExtensions ───────── v0.9.4 Installing 15 artifacts Installed artifact Blosc 44.2 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Lz4 239.7 KiB Installed artifact MPICH 3.3 MiB Installed artifact SLEEF 2.7 MiB Installed artifact XZ 1.4 MiB Installed artifact NetCDF 936.0 KiB Installed artifact XML2 2.5 MiB Installed artifact libaec 96.2 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Hwloc 3.5 MiB Installed artifact Libiconv 1.9 MiB Installed artifact libzip 177.6 KiB Installed artifact Zstd 646.0 KiB Installed artifact HDF5 5.7 MiB Updating `~/.julia/environments/v1.12/Project.toml` [e0a37952] + PALEOsediment v0.3.4 Updating `~/.julia/environments/v1.12/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.1 [13072b0f] + AxisAlgorithms v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.0 [e1450e63] + BufferedStreams v1.2.2 [179af706] + CFTime v0.1.4 [d360d2e6] + ChainRulesCore v1.25.1 [da1fd8a2] + CodeTracking v1.3.6 [944b1d66] + CodecZlib v0.7.8 [1fbeeb36] + CommonDataModel v0.3.8 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [3c3547ce] + DiskArrays v0.4.11 [ffbed154] + DocStringExtensions v0.9.4 [e2ba6199] + ExprTools v0.1.10 [86223c79] + Graphs v1.12.0 [f67ccb44] + HDF5 v0.17.2 [5903a43b] + Infiltrator v1.8.6 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.3 [a98d9a8b] + Interpolations v0.15.1 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [aa1ae85d] + JuliaInterpreter v0.9.42 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [6f1432cf] + LoweredCodeUtils v3.1.0 [23992714] + MAT v0.10.7 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.15 [e1d29d7a] + Missings v1.2.0 [85f8d34a] + NCDatasets v0.14.7 [6fe1bfb0] + OffsetArrays v1.16.0 [bac558e1] + OrderedCollections v1.8.0 [673cec3b] + PALEOaqchem v0.3.19 [804b410e] + PALEOboxes v0.22.4 [e0a37952] + PALEOsediment v0.3.4 [69de0a69] + Parsers v2.8.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.0 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [295af30f] + Revise v3.7.3 [fdea26ae] + SIMD v3.7.1 [91c51154] + SentinelArrays v1.4.8 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [1e6cf692] + TestEnv v1.102.0 [a759f4b9] + TimerOutputs v0.5.28 [3bb67fe8] + TranscodingStreams v0.11.3 [013be700] + UnsafeAtomics v0.3.0 [efce3f68] + WoodburyMatrices v1.0.0 ⌅ [ddb6d928] + YAML v0.4.12 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.0+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v401.900.300+0 [fe0851c0] + OpenMPI_jll v5.0.7+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [63e82ce6] + SLEEF_jll v3.7.0+0 [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.6.4+1 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.3+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [3a97d323] + MPFR_jll v4.2.1+2 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 20.09s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6567.6 ms ✓ TestEnv 1 dependency successfully precompiled in 9 seconds. 25 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 4 direct dependencies failed to precompile: PALEOaqchem Failed to precompile PALEOaqchem [673cec3b-17d1-411f-9fcd-71c01c593120] to "/home/pkgeval/.julia/compiled/v1.12/PALEOaqchem/jl_8dNgTr". ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [2] top-level scope @ ~/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:124 [3] include(mod::Module, _path::String) @ Base ./Base.jl:303 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [5] top-level scope @ stdin:5 [6] eval(m::Module, e::Any) @ Core ./boot.jl:489 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [8] include_string @ ./loading.jl:2871 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [10] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile PALEOboxes [804b410e-d900-4b2a-9ecd-f5a06d4c1fd4] to "/home/pkgeval/.julia/compiled/v1.12/PALEOboxes/jl_khPvYc". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] top-level scope @ ~/.julia/packages/PALEOaqchem/lxx8X/src/PALEOaqchem.jl:3 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOaqchem/lxx8X/src/PALEOaqchem.jl:1 in expression starting at stdin:5 PALEOsediment Failed to precompile PALEOsediment [e0a37952-6f01-4236-91ff-62fdc855f67b] to "/home/pkgeval/.julia/compiled/v1.12/PALEOsediment/jl_pb5Gb5". ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [2] top-level scope @ ~/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:124 [3] include(mod::Module, _path::String) @ Base ./Base.jl:303 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [5] top-level scope @ stdin:5 [6] eval(m::Module, e::Any) @ Core ./boot.jl:489 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [8] include_string @ ./loading.jl:2871 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [10] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile PALEOboxes [804b410e-d900-4b2a-9ecd-f5a06d4c1fd4] to "/home/pkgeval/.julia/compiled/v1.12/PALEOboxes/jl_0b9Swf". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] top-level scope @ ~/.julia/packages/PALEOsediment/UyLVX/src/PALEOsediment.jl:3 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOsediment/UyLVX/src/PALEOsediment.jl:1 in expression starting at stdin:5 PALEOmodel Failed to precompile PALEOmodel [bf7b4fbe-ccb1-42c5-83c2-e6e9378b660c] to "/home/pkgeval/.julia/compiled/v1.12/PALEOmodel/jl_OGTjYj". ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [2] top-level scope @ ~/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:124 [3] include(mod::Module, _path::String) @ Base ./Base.jl:303 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [5] top-level scope @ stdin:5 [6] eval(m::Module, e::Any) @ Core ./boot.jl:489 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [8] include_string @ ./loading.jl:2871 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [10] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile PALEOboxes [804b410e-d900-4b2a-9ecd-f5a06d4c1fd4] to "/home/pkgeval/.julia/compiled/v1.12/PALEOboxes/jl_DbuUsB". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] top-level scope @ ~/.julia/packages/PALEOmodel/uXiph/src/PALEOmodel.jl:18 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOmodel/uXiph/src/PALEOmodel.jl:1 in expression starting at stdin:5 PALEOboxes Failed to precompile PALEOboxes [804b410e-d900-4b2a-9ecd-f5a06d4c1fd4] to "/home/pkgeval/.julia/compiled/v1.12/PALEOboxes/jl_0Pb09l". ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [2] top-level scope @ ~/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:124 [3] include(mod::Module, _path::String) @ Base ./Base.jl:303 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [5] top-level scope @ stdin:5 [6] eval(m::Module, e::Any) @ Core ./boot.jl:489 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [8] include_string @ ./loading.jl:2871 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [10] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 1769.4s ################################################################################ # Testing # Testing PALEOsediment Status `/tmp/jl_DvKbCr/Project.toml` [a93c6f00] DataFrames v1.7.0 [e30172f5] Documenter v1.10.0 [5903a43b] Infiltrator v1.8.6 [d3d80556] LineSearches v7.3.0 [2774e3e8] NLsolve v4.5.1 [673cec3b] PALEOaqchem v0.3.19 [804b410e] PALEOboxes v0.22.4 [bf7b4fbe] PALEOmodel v0.16.5 [e0a37952] PALEOsediment v0.3.4 [91a5bcdd] Plots v1.40.11 [276daf66] SpecialFunctions v2.5.0 [c3572dad] Sundials v4.27.0 [1e6cf692] TestEnv v1.102.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_DvKbCr/Manifest.toml` [47edcb42] ADTypes v1.14.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [a9b6321e] Atomix v1.1.1 [13072b0f] AxisAlgorithms v1.1.0 [6e4b80f9] BenchmarkTools v1.6.0 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [fa961155] CEnum v0.5.0 [179af706] CFTime v0.1.4 [2a0fbf3d] CPUSummary v0.2.6 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [da1fd8a2] CodeTracking v1.3.6 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.0 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.0 [1fbeeb36] CommonDataModel v0.3.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.167.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.49 [3c3547ce] DiskArrays v0.4.11 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.4 [e30172f5] Documenter v1.10.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.8 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [c87230d0] FFMPEG v0.4.2 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.1.2 [5789e2e9] FileIO v1.17.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers 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LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [6f1432cf] LoweredCodeUtils v3.1.0 [23992714] MAT v0.10.7 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.15 [d125e4d3] ManualMemory v0.1.8 [d0879d2d] MarkdownAST v0.1.2 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.2 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.5 [46d2c3a1] MuladdMacro v0.2.4 [bdf0d083] MultiFloats v2.3.0 [85f8d34a] NCDatasets v0.14.7 [d41bc354] NLSolversBase v7.9.0 [2774e3e8] NLsolve v4.5.1 [77ba4419] NaNMath v1.1.2 [6fe1bfb0] OffsetArrays v1.16.0 [4d8831e6] OpenSSL v1.4.3 [bac558e1] OrderedCollections v1.8.0 [673cec3b] PALEOaqchem v0.3.19 [804b410e] PALEOboxes v0.22.4 [bf7b4fbe] PALEOmodel v0.16.5 [e0a37952] PALEOsediment v0.3.4 [65ce6f38] PackageExtensionCompat v1.0.2 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [ccf2f8ad] PlotThemes v3.3.0 [995b91a9] PlotUtils v1.4.3 [91a5bcdd] Plots v1.40.11 [f517fe37] Polyester v0.7.16 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Cloning git-repo `https://github.com/PALEOtoolkit/NLsolve.jl` Updating git-repo `https://github.com/PALEOtoolkit/NLsolve.jl` Resolving package versions... Updating `/tmp/jl_DvKbCr/Project.toml` [2774e3e8] ~ NLsolve v4.5.1 ⇒ v4.5.1 `https://github.com/PALEOtoolkit/NLsolve.jl#project_region` Updating `/tmp/jl_DvKbCr/Manifest.toml` [2774e3e8] ~ NLsolve v4.5.1 ⇒ v4.5.1 `https://github.com/PALEOtoolkit/NLsolve.jl#project_region` Precompiling packages... 5311.5 ms ✓ NLsolve 1 dependency successfully precompiled in 6 seconds. 46 already precompiled. Precompiling packages... Info Given PALEOboxes was explicitly requested, output will be shown live  ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace:  [1] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:304  [2] top-level scope  @ ~/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:124  [3] include(mod::Module, _path::String)  @ Base ./Base.jl:303  [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3015  [5] top-level scope  @ stdin:5  [6] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2861  [8] include_string  @ ./loading.jl:2871 [inlined]  [9] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:326  [10] _start()  @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:1 in expression starting at stdin:5 ✗ PALEOboxes 0 dependencies successfully precompiled in 20 seconds. 143 already precompiled. sediment examples: Error During Test at /home/pkgeval/.julia/packages/PALEOsediment/UyLVX/test/runtests.jl:13 Got exception outside of a @test LoadError: The following 1 direct dependency failed to precompile: PALEOboxes Failed to precompile PALEOboxes [804b410e-d900-4b2a-9ecd-f5a06d4c1fd4] to "/home/pkgeval/.julia/compiled/v1.12/PALEOboxes/jl_Ty2K2u". ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [2] top-level scope @ ~/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:124 [3] include(mod::Module, _path::String) @ Base ./Base.jl:303 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [5] top-level scope @ stdin:5 [6] eval(m::Module, e::Any) @ Core ./boot.jl:489 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [8] include_string @ ./loading.jl:2871 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [10] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/PALEOsediment/UyLVX/examples/boudreau1996/runtests.jl:7 PALEOsediment all: Error During Test at /home/pkgeval/.julia/packages/PALEOsediment/UyLVX/test/runtests.jl:11 Got exception outside of a @test UndefVarError: `PALEOsediment` not defined in `Main` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ ~/.julia/packages/PALEOsediment/UyLVX/test/runtests.jl:13 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined] [3] macro expansion @ ~/.julia/packages/PALEOsediment/UyLVX/test/runtests.jl:19 [inlined] [4] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [5] top-level scope @ none:6 [6] eval(m::Module, e::Any) @ Core ./boot.jl:489 [7] exec_options(opts::Base.JLOptions) @ Base ./client.jl:294 [8] _start() @ Base ./client.jl:560 Test Summary: | Error Total Time PALEOsediment all | 2 2 44.3s sediment examples | 1 1 34.9s RNG of the outermost testset: Random.Xoshiro(0x565689eb6439c600, 0x66d2fe29afea4258, 0x5477c9269e051c6b, 0x9b1148956fb6f5a7, 0x6e9f6e3f9812d2b0) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PALEOsediment/UyLVX/test/runtests.jl:11 Testing failed after 86.63s ERROR: LoadError: Package PALEOsediment errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1954.03s: package fails to precompile