Package evaluation of PALEOmodel on Julia 1.12.0-DEV.2153 (83dcbd426d*) started at 2025-03-31T12:35:14.413 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.09s ################################################################################ # Installation # Installing PALEOmodel... Resolving package versions... Installed LRUCache ───────────────────────── v1.6.2 Installed TimerOutputs ───────────────────── v0.5.28 Installed InlineStrings ──────────────────── v1.4.3 Installed OffsetArrays ───────────────────── v1.16.0 Installed Polyester ──────────────────────── v0.7.16 Installed Accessors ──────────────────────── v0.1.42 Installed Preferences ────────────────────── v1.4.3 Installed Sundials_jll ───────────────────── v5.2.3+0 Installed EnumX ──────────────────────────── v1.0.5 Installed StaticArrays ───────────────────── v1.9.13 Installed CEnum ──────────────────────────── v0.5.0 Installed InvertedIndices ────────────────── v1.3.1 Installed FunctionWrappers ───────────────── v1.1.3 Installed FileIO ─────────────────────────── v1.17.0 Installed RecursiveArrayTools ────────────── v3.31.2 Installed SparsityTracing ────────────────── v0.2.6 Installed CodeTracking ───────────────────── v1.3.6 Installed Statistics ─────────────────────── v1.11.1 Installed CFTime ─────────────────────────── v0.1.4 Installed Static ─────────────────────────── v1.2.0 Installed Missings ───────────────────────── v1.2.0 Installed Distances ──────────────────────── v0.10.12 Installed MAT ────────────────────────────── v0.10.7 Installed PALEOboxes ─────────────────────── v0.22.4 Installed FiniteDiff ─────────────────────── v2.27.0 Installed MuladdMacro ────────────────────── v0.2.4 Installed SIMDTypes ──────────────────────── v0.1.0 Installed SIMD ───────────────────────────── v3.7.1 Installed DataFrames ─────────────────────── v1.7.0 Installed IrrationalConstants ────────────── v0.2.4 Installed FastPower ──────────────────────── v1.1.2 Installed ArnoldiMethod ──────────────────── v0.4.0 Installed CpuId ──────────────────────────── v0.3.1 Installed JSON ───────────────────────────── v0.21.4 Installed DiffEqBase ─────────────────────── v6.167.1 Installed Hwloc_jll ──────────────────────── v2.12.0+0 Installed ADTypes ────────────────────────── v1.14.0 Installed NLsolve ────────────────────────── v4.5.1 Installed SciMLBase ──────────────────────── v2.81.0 Installed Revise ─────────────────────────── v3.7.3 Installed SpecialFunctions ───────────────── v2.5.0 Installed BenchmarkTools ─────────────────── v1.6.0 Installed Infiltrator ────────────────────── v1.8.6 Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed SentinelArrays ─────────────────── v1.4.8 Installed LoweredCodeUtils ───────────────── v3.1.0 Installed XZ_jll ─────────────────────────── v5.6.4+1 Installed IfElse ─────────────────────────── v0.1.1 Installed MicrosoftMPI_jll ───────────────── v10.1.4+3 Installed StringEncodings ────────────────── v0.3.7 Installed StaticArraysCore ───────────────── v1.4.3 Installed NaNMath ────────────────────────── v1.1.2 Installed SLEEF_jll ──────────────────────── v3.7.0+0 Installed ThreadingUtilities ─────────────── v0.5.2 Installed ManualMemory ───────────────────── v0.1.8 Installed TranscodingStreams ─────────────── v0.11.3 Installed MPIPreferences ─────────────────── v0.1.11 Installed Lz4_jll ────────────────────────── v1.10.1+0 Installed NLSolversBase ──────────────────── v7.9.0 Installed Ratios ─────────────────────────── v0.4.5 Installed CommonSubexpressions ───────────── v0.3.1 Installed DataStructures ─────────────────── v0.18.22 Installed StatsAPI ───────────────────────── v1.7.0 Installed ExprTools ──────────────────────── v0.1.10 Installed BufferedStreams ────────────────── v1.2.2 Installed PALEOmodel ─────────────────────── v0.16.5 Installed Compat ─────────────────────────── v4.16.0 Installed CommonWorldInvalidations ───────── v1.0.0 Installed NetCDF_jll ─────────────────────── v401.900.300+0 Installed MPICH_jll ──────────────────────── v4.3.0+1 Installed HDF5_jll ───────────────────────── v1.14.6+0 Installed CodecZlib ──────────────────────── v0.7.8 Installed StaticArrayInterface ───────────── v1.8.0 Installed Graphs ─────────────────────────── v1.12.0 Installed SciMLStructures ────────────────── v1.7.0 Installed DiffRules ──────────────────────── v1.15.1 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed libzip_jll ─────────────────────── v1.11.3+0 Installed FunctionWrappersWrappers ───────── v0.1.3 Installed Sundials ───────────────────────── v4.27.0 Installed LayoutPointers ─────────────────── v0.1.17 Installed Zstd_jll ───────────────────────── v1.5.7+1 Installed Inflate ────────────────────────── v0.1.5 Installed TableTraits ────────────────────── v1.0.1 Installed DiffResults ────────────────────── v1.1.0 Installed JuliaInterpreter ───────────────── v0.9.42 Installed PrettyTables ───────────────────── v2.4.0 Installed SciMLOperators ─────────────────── v0.3.13 Installed Parsers ────────────────────────── v2.8.1 Installed OpenMPI_jll ────────────────────── v5.0.7+1 Installed PooledArrays ───────────────────── v1.4.3 Installed Setfield ───────────────────────── v1.1.2 Installed ExproniconLite ─────────────────── v0.10.14 Installed JLLWrappers ────────────────────── v1.7.0 Installed EnzymeCore ─────────────────────── v0.8.8 Installed DataValueInterfaces ────────────── v1.0.0 Installed ConstructionBase ───────────────── v1.5.8 Installed OrderedCollections ─────────────── v1.8.0 Installed NCDatasets ─────────────────────── v0.14.7 Installed ChainRulesCore ─────────────────── v1.25.1 Installed FastClosures ───────────────────── v0.3.2 Installed PolyesterWeave ─────────────────── v0.2.2 Installed ArrayInterface ─────────────────── v7.18.0 Installed LineSearches ───────────────────── v7.3.0 Installed Reexport ───────────────────────── v1.2.2 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed LogExpFunctions ────────────────── v0.3.29 Installed CommonDataModel ────────────────── v0.3.8 Installed PackageExtensionCompat ─────────── v1.0.2 Installed MacroTools ─────────────────────── v0.5.15 Installed CompositionsBase ───────────────── v0.1.2 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed UnPack ─────────────────────────── v1.0.2 Installed UnsafeAtomics ──────────────────── v0.3.0 Installed Interpolations ─────────────────── v0.15.1 Installed CommonSolve ────────────────────── v0.2.4 Installed InverseFunctions ───────────────── v0.1.17 Installed SimpleTraits ───────────────────── v0.9.4 Installed GPUArraysCore ──────────────────── v0.2.0 Installed Blosc_jll ──────────────────────── v1.21.7+0 Installed Atomix ─────────────────────────── v1.1.1 Installed YAML ───────────────────────────── v0.4.12 Installed DocStringExtensions ────────────── v0.9.4 Installed libaec_jll ─────────────────────── v1.1.3+0 Installed Crayons ────────────────────────── v4.1.1 Installed XML2_jll ───────────────────────── v2.13.6+1 Installed Adapt ──────────────────────────── v4.3.0 Installed StrideArraysCore ───────────────── v0.5.7 Installed RuntimeGeneratedFunctions ──────── v0.5.13 Installed VertexSafeGraphs ───────────────── v0.2.0 Installed CPUSummary ─────────────────────── v0.2.6 Installed DifferentiationInterface ───────── v0.6.49 Installed Jieko ──────────────────────────── v0.2.1 Installed Tables ─────────────────────────── v1.12.0 Installed HDF5 ───────────────────────────── v0.17.2 Installed RecipesBase ────────────────────── v1.3.4 Installed DataAPI ────────────────────────── v1.16.0 Installed TruncatedStacktraces ───────────── v1.4.0 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed ConcreteStructs ────────────────── v0.2.3 Installed PrecompileTools ────────────────── v1.3.0 Installed Moshi ──────────────────────────── v0.3.5 Installed LaTeXStrings ───────────────────── v1.4.0 Installed MPItrampoline_jll ──────────────── v5.5.3+0 Installed AxisAlgorithms ─────────────────── v1.1.0 Installed StructArrays ───────────────────── v0.7.0 Installed MultiFloats ────────────────────── v2.3.0 Installed SymbolicIndexingInterface ──────── v0.3.38 Installed ForwardDiff ────────────────────── v0.10.38 Installed Requires ───────────────────────── v1.3.1 Installed FastBroadcast ──────────────────── v0.3.5 Installed WoodburyMatrices ───────────────── v1.0.0 Installed Parameters ─────────────────────── v0.12.3 Installed StringManipulation ─────────────── v0.4.1 Installed SortingAlgorithms ──────────────── v1.2.1 Installed DiskArrays ─────────────────────── v0.4.11 Installed SparseDiffTools ────────────────── v2.24.0 Installed Sparspak ───────────────────────── v0.3.9 Installing 16 artifacts Installed artifact Blosc 44.2 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Lz4 239.7 KiB Installed artifact NetCDF 936.0 KiB Installed artifact MPICH 3.3 MiB Installed artifact XZ 1.4 MiB Installed artifact Sundials 2.1 MiB Installed artifact SLEEF 2.7 MiB Installed artifact XML2 2.5 MiB Installed artifact libaec 96.2 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Hwloc 3.5 MiB Installed artifact Libiconv 1.9 MiB Installed artifact libzip 177.6 KiB Installed artifact Zstd 646.0 KiB Installed artifact HDF5 5.7 MiB Updating `~/.julia/environments/v1.12/Project.toml` [bf7b4fbe] + PALEOmodel v0.16.5 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [a9b6321e] + Atomix v1.1.1 [13072b0f] + AxisAlgorithms v1.1.0 [6e4b80f9] + BenchmarkTools v1.6.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [fa961155] + CEnum v0.5.0 [179af706] + CFTime v0.1.4 [2a0fbf3d] + CPUSummary v0.2.6 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [da1fd8a2] + CodeTracking v1.3.6 [944b1d66] + CodecZlib v0.7.8 [1fbeeb36] + CommonDataModel v0.3.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + 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[842dd82b] + InlineStrings v1.4.3 [a98d9a8b] + Interpolations v0.15.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [aa1ae85d] + JuliaInterpreter v0.9.42 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [6f1432cf] + LoweredCodeUtils v3.1.0 [23992714] + MAT v0.10.7 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.15 [d125e4d3] + ManualMemory v0.1.8 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.5 [46d2c3a1] + MuladdMacro v0.2.4 [bdf0d083] + MultiFloats v2.3.0 [85f8d34a] + NCDatasets v0.14.7 [d41bc354] + NLSolversBase v7.9.0 [2774e3e8] + NLsolve v4.5.1 [77ba4419] + NaNMath v1.1.2 [6fe1bfb0] + OffsetArrays v1.16.0 [bac558e1] + OrderedCollections v1.8.0 [804b410e] + PALEOboxes v0.22.4 [bf7b4fbe] + PALEOmodel v0.16.5 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.1 [f517fe37] + Polyester v0.7.16 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.0 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.31.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [295af30f] + Revise v3.7.3 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [fdea26ae] + SIMD v3.7.1 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.81.0 [c0aeaf25] + SciMLOperators v0.3.13 [53ae85a6] + SciMLStructures v1.7.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [47a9eef4] + SparseDiffTools v2.24.0 [06eadbd4] + SparsityTracing v0.2.6 [e56a9233] + Sparspak v0.3.9 [276daf66] + SpecialFunctions v2.5.0 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [7792a7ef] + StrideArraysCore v0.5.7 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.0 [c3572dad] + Sundials v4.27.0 [2efcf032] + SymbolicIndexingInterface v0.3.38 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [1e6cf692] + TestEnv v1.102.0 [8290d209] + ThreadingUtilities v0.5.2 [a759f4b9] + TimerOutputs v0.5.28 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [19fa3120] + VertexSafeGraphs v0.2.0 [efce3f68] + WoodburyMatrices v1.0.0 ⌅ [ddb6d928] + YAML v0.4.12 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.0+1 [f1f71cc9] + MPItrampoline_jll v5.5.3+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v401.900.300+0 [fe0851c0] + OpenMPI_jll v5.0.7+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [63e82ce6] + SLEEF_jll v3.7.0+0 ⌅ [fb77eaff] + Sundials_jll v5.2.3+0 [02c8fc9c] + XML2_jll v2.13.6+1 [ffd25f8a] + XZ_jll v5.6.4+1 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.3+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [3a97d323] + MPFR_jll v4.2.1+2 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 23.49s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6839.6 ms ✓ TestEnv 1 dependency successfully precompiled in 9 seconds. 25 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: PALEOmodel Failed to precompile PALEOmodel [bf7b4fbe-ccb1-42c5-83c2-e6e9378b660c] to "/home/pkgeval/.julia/compiled/v1.12/PALEOmodel/jl_joNzmY". ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [2] top-level scope @ ~/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:124 [3] include(mod::Module, _path::String) @ Base ./Base.jl:303 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3015 [5] top-level scope @ stdin:5 [6] eval(m::Module, e::Any) @ Core ./boot.jl:489 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [8] include_string @ ./loading.jl:2871 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [10] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile PALEOboxes [804b410e-d900-4b2a-9ecd-f5a06d4c1fd4] to "/home/pkgeval/.julia/compiled/v1.12/PALEOboxes/jl_eLRc4D". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3302 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2688 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3873 [11] maybe_cachefile_lock @ ./loading.jl:3870 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2674 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [14] macro expansion @ ./loading.jl:2430 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [17] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [18] top-level scope @ ~/.julia/packages/PALEOmodel/uXiph/src/PALEOmodel.jl:18 [19] include(mod::Module, _path::String) @ Base ./Base.jl:303 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [24] include_string @ ./loading.jl:2871 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [26] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOmodel/uXiph/src/PALEOmodel.jl:1 in expression starting at stdin:5 PALEOboxes Failed to precompile PALEOboxes [804b410e-d900-4b2a-9ecd-f5a06d4c1fd4] to "/home/pkgeval/.julia/compiled/v1.12/PALEOboxes/jl_Bdw1SG". ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [2] top-level scope @ ~/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:124 [3] include(mod::Module, _path::String) @ Base ./Base.jl:303 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [5] top-level scope @ stdin:5 [6] eval(m::Module, e::Any) @ Core ./boot.jl:489 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [8] include_string @ ./loading.jl:2871 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [10] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 966.96s ################################################################################ # Testing # Testing PALEOmodel Status `/tmp/jl_HelBUX/Project.toml` [a93c6f00] DataFrames v1.7.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.4 [5789e2e9] FileIO v1.17.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [5903a43b] Infiltrator v1.8.6 [bdf0d083] MultiFloats v2.3.0 [85f8d34a] NCDatasets v0.14.7 [2774e3e8] NLsolve v4.5.1 [bac558e1] OrderedCollections v1.8.0 [804b410e] PALEOboxes v0.22.4 [bf7b4fbe] PALEOmodel v0.16.5 [3cdcf5f2] RecipesBase v1.3.4 [ae029012] Requires v1.3.1 [295af30f] Revise v3.7.3 [0bca4576] SciMLBase v2.81.0 [47a9eef4] SparseDiffTools v2.24.0 [06eadbd4] SparsityTracing v0.2.6 [e56a9233] Sparspak v0.3.9 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [c3572dad] Sundials v4.27.0 [1e6cf692] TestEnv v1.102.0 [a759f4b9] TimerOutputs v0.5.28 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [de0858da] Printf v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_HelBUX/Manifest.toml` [47edcb42] ADTypes v1.14.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [a9b6321e] Atomix v1.1.1 [13072b0f] AxisAlgorithms v1.1.0 [6e4b80f9] BenchmarkTools v1.6.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [fa961155] CEnum v0.5.0 [179af706] CFTime v0.1.4 [2a0fbf3d] CPUSummary v0.2.6 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [da1fd8a2] CodeTracking v1.3.6 [944b1d66] CodecZlib v0.7.8 [1fbeeb36] CommonDataModel v0.3.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v6.167.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.49 [3c3547ce] DiskArrays v0.4.11 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.4 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.8 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.1.2 [5789e2e9] FileIO v1.17.0 [6a86dc24] FiniteDiff v2.27.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [86223c79] Graphs v1.12.0 [f67ccb44] HDF5 v0.17.2 [615f187c] IfElse v0.1.1 [5903a43b] Infiltrator v1.8.6 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.3 [a98d9a8b] Interpolations v0.15.1 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [aa1ae85d] JuliaInterpreter v0.9.42 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [d3d80556] LineSearches v7.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.1.0 [23992714] MAT v0.10.7 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.15 [d125e4d3] ManualMemory v0.1.8 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.5 [46d2c3a1] MuladdMacro v0.2.4 [bdf0d083] MultiFloats v2.3.0 [85f8d34a] NCDatasets v0.14.7 [d41bc354] NLSolversBase v7.9.0 [2774e3e8] NLsolve v4.5.1 [77ba4419] NaNMath v1.1.2 [6fe1bfb0] OffsetArrays v1.16.0 [bac558e1] OrderedCollections v1.8.0 [804b410e] PALEOboxes v0.22.4 [bf7b4fbe] PALEOmodel v0.16.5 [65ce6f38] PackageExtensionCompat v1.0.2 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [f517fe37] Polyester v0.7.16 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.0 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.31.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [295af30f] Revise v3.7.3 [7e49a35a] RuntimeGeneratedFunctions v0.5.13 [fdea26ae] SIMD v3.7.1 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.81.0 [c0aeaf25] SciMLOperators v0.3.13 [53ae85a6] SciMLStructures v1.7.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [47a9eef4] SparseDiffTools v2.24.0 [06eadbd4] SparsityTracing v0.2.6 [e56a9233] Sparspak v0.3.9 [276daf66] SpecialFunctions v2.5.0 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [7792a7ef] StrideArraysCore v0.5.7 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [09ab397b] StructArrays v0.7.0 [c3572dad] Sundials v4.27.0 [2efcf032] SymbolicIndexingInterface v0.3.38 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [1e6cf692] TestEnv v1.102.0 [8290d209] ThreadingUtilities v0.5.2 [a759f4b9] TimerOutputs v0.5.28 [3bb67fe8] TranscodingStreams v0.11.3 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.0 [19fa3120] VertexSafeGraphs v0.2.0 [efce3f68] WoodburyMatrices v1.0.0 ⌅ [ddb6d928] YAML v0.4.12 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [7cb0a576] MPICH_jll v4.3.0+1 [f1f71cc9] MPItrampoline_jll v5.5.3+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [7243133f] NetCDF_jll v401.900.300+0 [fe0851c0] OpenMPI_jll v5.0.7+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [63e82ce6] SLEEF_jll v3.7.0+0 ⌅ [fb77eaff] Sundials_jll v5.2.3+0 [02c8fc9c] XML2_jll v2.13.6+1 [ffd25f8a] XZ_jll v5.6.4+1 [3161d3a3] Zstd_jll v1.5.7+1 [477f73a3] libaec_jll v1.1.3+0 [337d8026] libzip_jll v1.11.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [3a97d323] MPFR_jll v4.2.1+2 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... Info Given PALEOboxes was explicitly requested, output will be shown live  ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace:  [1] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:304  [2] top-level scope  @ ~/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:124  [3] include(mod::Module, _path::String)  @ Base ./Base.jl:303  [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3015  [5] top-level scope  @ stdin:5  [6] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2861  [8] include_string  @ ./loading.jl:2871 [inlined]  [9] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:326  [10] _start()  @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:1 in expression starting at stdin:5 ✗ PALEOboxes 0 dependencies successfully precompiled in 22 seconds. 143 already precompiled. All tests: Error During Test at /home/pkgeval/.julia/packages/PALEOmodel/uXiph/test/runtests.jl:5 Got exception outside of a @test LoadError: The following 1 direct dependency failed to precompile: PALEOboxes Failed to precompile PALEOboxes [804b410e-d900-4b2a-9ecd-f5a06d4c1fd4] to "/home/pkgeval/.julia/compiled/v1.12/PALEOboxes/jl_qF2TVl". ERROR: LoadError: cannot declare PALEOboxes.VarList_tuple_nothing exported; it is already declared public Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [2] top-level scope @ ~/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:124 [3] include(mod::Module, _path::String) @ Base ./Base.jl:303 [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [5] top-level scope @ stdin:5 [6] eval(m::Module, e::Any) @ Core ./boot.jl:489 [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [8] include_string @ ./loading.jl:2871 [inlined] [9] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [10] _start() @ Base ./client.jl:560 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/VariableReaction.jl:585 in expression starting at /home/pkgeval/.julia/packages/PALEOboxes/k4QWy/src/PALEOboxes.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/PALEOmodel/uXiph/test/runfieldtests.jl:5 Test Summary: | Error Total Time All tests | 1 1 22.1s RNG of the outermost testset: Random.Xoshiro(0xfff771e056bec868, 0xdf9b37adde539485, 0xbf7b146430c6f464, 0xae3f5266769cb4ba, 0x1febbfac23e53d01) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PALEOmodel/uXiph/test/runtests.jl:5 Testing failed after 42.43s ERROR: LoadError: Package PALEOmodel errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1075.29s: package fails to precompile