Package evaluation of JUDI on Julia 1.12.0-DEV.2153 (83dcbd426d*) started at 2025-03-31T12:19:06.296 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.33s ################################################################################ # Installation # Installing JUDI... Resolving package versions... Installed MicroMamba ────────────────── v0.1.14 Installed IntegerMathUtils ──────────── v0.1.2 Installed oneTBB_jll ────────────────── v2022.0.0+0 Installed IrrationalConstants ───────── v0.2.4 Installed ContextVariablesX ─────────── v0.1.3 Installed Scratch ───────────────────── v1.2.1 Installed AbstractNFFTs ─────────────── v0.8.2 Installed ArgCheck ──────────────────── v2.5.0 Installed DistributedArrays ─────────── v0.6.7 Installed JSON3 ─────────────────────── v1.14.2 Installed Preferences ───────────────── v1.4.3 Installed Transducers ───────────────── v0.4.84 Installed Accessors ─────────────────── v0.1.42 Installed FFTW ──────────────────────── v1.8.1 Installed DSP ───────────────────────── v0.7.10 Installed FLoopsBase ────────────────── v0.1.1 Installed PythonCall ────────────────── v0.9.24 Installed IterTools ─────────────────── v1.10.0 Installed TableTraits ───────────────── v1.0.1 Installed Dierckx ───────────────────── v0.5.4 Installed BasicInterpolators ────────── v0.7.1 Installed Parsers ───────────────────── v2.8.1 Installed SpecialFunctions ──────────── v2.5.0 Installed DataAPI ───────────────────── v1.16.0 Installed MKL_jll ───────────────────── v2025.0.1+1 Installed Tables ────────────────────── v1.12.0 Installed Setfield ──────────────────── v1.1.2 Installed Baselet ───────────────────── v0.1.1 Installed Dierckx_jll ───────────────── v0.2.0+0 Installed Primes ────────────────────── v0.5.7 Installed RecipesBase ───────────────── v1.3.4 Installed Pidfile ───────────────────── v1.3.0 Installed AbstractFFTs ──────────────── v1.5.0 Installed JLLWrappers ───────────────── v1.7.0 Installed micromamba_jll ────────────── v1.5.8+0 Installed Nullables ─────────────────── v1.0.0 Installed StaticArraysCore ──────────── v1.4.3 Installed IterativeSolvers ──────────── v0.9.4 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed MicroCollections ──────────── v0.2.0 Installed ConstructionBase ──────────── v1.5.8 Installed PrecompileTools ───────────── v1.3.0 Installed DataValueInterfaces ───────── v1.0.0 Installed DefineSingletons ──────────── v0.1.2 Installed InplaceOps ────────────────── v0.3.0 Installed NameResolution ────────────── v0.1.5 Installed OrderedCollections ────────── v1.8.0 Installed InitialValues ─────────────── v0.3.1 Installed Reexport ──────────────────── v1.2.2 Installed Statistics ────────────────── v1.11.1 Installed ChainRulesCore ────────────── v1.25.1 Installed SplittablesBase ───────────── v0.1.15 Installed LogExpFunctions ───────────── v0.3.29 Installed Wavelets ──────────────────── v0.9.5 Installed Requires ──────────────────── v1.3.1 Installed NFFT ──────────────────────── v0.13.6 Installed Polynomials ───────────────── v4.0.19 Installed IntelOpenMP_jll ───────────── v2025.0.4+0 Installed Memoize ───────────────────── v0.4.4 Installed UnsafePointers ────────────── v1.0.0 Installed PrettyPrint ───────────────── v0.2.0 Installed MacroTools ────────────────── v0.5.15 Installed BangBang ──────────────────── v0.4.4 Installed FFTW_jll ──────────────────── v3.3.10+3 Installed Compat ────────────────────── v4.16.0 Installed CompositionsBase ──────────── v0.1.2 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed JuliaVariables ────────────── v0.2.4 Installed MLStyle ───────────────────── v0.4.17 Installed InverseFunctions ──────────── v0.1.17 Installed pixi_jll ──────────────────── v0.41.3+0 Installed StructTypes ───────────────── v1.11.0 Installed DocStringExtensions ───────── v0.9.4 Installed FLoops ────────────────────── v0.2.2 Installed JOLI ──────────────────────── v0.9.0 Installed CondaPkg ──────────────────── v0.2.26 Installed JUDI ──────────────────────── v4.1.0 Installed SegyIO ────────────────────── v0.8.5 Installing 4 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Dierckx 149.2 KiB Installed artifact oneTBB 435.6 KiB Installed artifact FFTW 2.2 MiB Updating `~/.julia/environments/v1.12/Project.toml` [f3b833dc] + JUDI v4.1.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7f219486] + AbstractNFFTs v0.8.2 [7d9f7c33] + Accessors v0.1.42 [dce04be8] + ArgCheck v2.5.0 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [26cce99e] + BasicInterpolators v0.7.1 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [992eb4ea] + CondaPkg v0.2.26 [187b0558] + ConstructionBase v1.5.8 [6add18c4] + ContextVariablesX v0.1.3 ⌅ [717857b8] + DSP v0.7.10 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [39dd38d3] + Dierckx v0.5.4 [aaf54ef3] + DistributedArrays v0.6.7 [ffbed154] + DocStringExtensions v0.9.4 [7a1cc6ca] + FFTW v1.8.1 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [22cec73e] + InitialValues v0.3.1 [505f98c9] + InplaceOps v0.3.0 [18e54dd8] + IntegerMathUtils v0.1.2 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [bb331ad6] + JOLI v0.9.0 [0f8b85d8] + JSON3 v1.14.2 [f3b833dc] + JUDI v4.1.0 [b14d175d] + JuliaVariables v0.2.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.15 [c03570c3] + Memoize v0.4.4 [128add7d] + MicroCollections v0.2.0 [0b3b1443] + MicroMamba v0.1.14 [efe261a4] + NFFT v0.13.6 [71a1bf82] + NameResolution v0.1.5 [4d1e1d77] + Nullables v1.0.0 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [fa939f87] + Pidfile v1.3.0 [f27b6e38] + Polynomials v4.0.19 [aea7be01] + PrecompileTools v1.3.0 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [27ebfcd6] + Primes v0.5.7 [6099a3de] + PythonCall v0.9.24 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.2.1 [157a0f19] + SegyIO v0.8.5 [efcf1570] + Setfield v1.1.2 [276daf66] + SpecialFunctions v2.5.0 [171d559e] + SplittablesBase v0.1.15 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [28d57a85] + Transducers v0.4.84 [e17b2a0c] + UnsafePointers v1.0.0 ⌅ [29a6e085] + Wavelets v0.9.5 [cd4c43a9] + Dierckx_jll v0.2.0+0 [f5851436] + FFTW_jll v3.3.10+3 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f8abcde7] + micromamba_jll v1.5.8+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building JUDI → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/50b459c1bdb8f8bbeaed538507409a936a5f7ed9/build.log` Installation completed after 351.34s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6590.3 ms ✓ TestEnv 1 dependency successfully precompiled in 8 seconds. 25 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 3 direct dependencies failed to precompile: JLD2JUDIExt Failed to precompile JLD2JUDIExt [3ff00e4c-8e8e-5fd5-9aa3-a600386b53e6] to "/home/pkgeval/.julia/compiled/v1.12/JLD2JUDIExt/jl_nLoI0J". ERROR: LoadError: InitError: ConcurrencyViolationError("deadlock detected in loading pixi_jll using pixi_jll (while loading Accessors and Memoize and AbstractFFTsTestExt and DefineSingletons and BangBangChainRulesCoreExt and InplaceOps and PolynomialsChainRulesCoreExt and LinearAlgebraExt and Nullables and FLoops and NFFT and CompositionsBaseInverseFunctionsExt and MLStyle and Primes and ContextVariablesX and LazyArtifacts and ChainRulesCoreSparseArraysExt and InitialValues and JOLI and TestExt and IterativeSolvers and PythonCall and InverseFunctionsTestExt and Baselet and SplittablesBase and DistributedArrays and JuliaVariables and LogExpFunctionsInverseFunctionsExt and LogExpFunctionsChainRulesCoreExt and Test and SegyIO and FLoopsBase and PrettyPrint and BangBang and AbstractFFTsChainRulesCoreExt and SpecialFunctionsChainRulesCoreExt and JUDI and AbstractNFFTs and NameResolution and IntegerMathUtils and Transducers and BasicInterpolators and BangBangTablesExt and InverseFunctions and SharedArrays and CompositionsBase and InverseFunctionsDatesExt and JLD2JUDIExt and InteractiveUtils and ChainRulesCore and MicroCollections and ArgCheck and Wavelets)") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2219 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2227 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2497 [4] _require_prelocked @ ./loading.jl:2496 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2494 [7] require(uuidkey::Base.PkgId) @ Base ./loading.jl:2492 [8] pixi_jll_module() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/CondaPkg.jl:37 [9] backend() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/backend.jl:17 [10] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/context.jl:55 [11] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/C.jl:23 [12] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1424 [13] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1412 [14] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1300 [15] _include_from_serialized (repeats 2 times) @ ./loading.jl:1246 [inlined] [16] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2111 [17] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2636 [18] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [19] macro expansion @ ./loading.jl:2430 [inlined] [20] macro expansion @ ./lock.jl:376 [inlined] [21] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [23] top-level scope @ ~/.julia/packages/JUDI/wVmYb/ext/JLD2JUDIExt.jl:3 [24] include(mod::Module, _path::String) @ Base ./Base.jl:303 [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [26] top-level scope @ stdin:5 [27] eval(m::Module, e::Any) @ Core ./boot.jl:489 [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [29] include_string @ ./loading.jl:2871 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [31] _start() @ Base ./client.jl:560 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/JUDI/wVmYb/ext/JLD2JUDIExt.jl:1 in expression starting at stdin:5 ZygoteJUDIExt Failed to precompile ZygoteJUDIExt [e23d9f1c-08bd-5e6e-ab2f-14dcf5d0d6c8] to "/home/pkgeval/.julia/compiled/v1.12/ZygoteJUDIExt/jl_jepCvP". ERROR: LoadError: InitError: ConcurrencyViolationError("deadlock detected in loading pixi_jll using pixi_jll (while loading Accessors and Memoize and AbstractFFTsTestExt and DefineSingletons and BangBangChainRulesCoreExt and InplaceOps and PolynomialsChainRulesCoreExt and LinearAlgebraExt and Nullables and FLoops and NFFT and CompositionsBaseInverseFunctionsExt and MLStyle and Primes and ContextVariablesX and LazyArtifacts and ChainRulesCoreSparseArraysExt and InitialValues and JOLI and TestExt and IterativeSolvers and PythonCall and InverseFunctionsTestExt and Baselet and SplittablesBase and DistributedArrays and JuliaVariables and LogExpFunctionsInverseFunctionsExt and LogExpFunctionsChainRulesCoreExt and Test and SegyIO and FLoopsBase and PrettyPrint and BangBang and AbstractFFTsChainRulesCoreExt and SpecialFunctionsChainRulesCoreExt and JUDI and AbstractNFFTs and NameResolution and IntegerMathUtils and Transducers and BasicInterpolators and BangBangTablesExt and ZygoteJUDIExt and InverseFunctions and SharedArrays and CompositionsBase and InverseFunctionsDatesExt and InteractiveUtils and ChainRulesCore and MicroCollections and ArgCheck and Wavelets)") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2219 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2227 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2497 [4] _require_prelocked @ ./loading.jl:2496 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2494 [7] require(uuidkey::Base.PkgId) @ Base ./loading.jl:2492 [8] pixi_jll_module() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/CondaPkg.jl:37 [9] backend() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/backend.jl:17 [10] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/context.jl:55 [11] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/C.jl:23 [12] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1424 [13] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1412 [14] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1300 [15] _include_from_serialized (repeats 2 times) @ ./loading.jl:1246 [inlined] [16] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2111 [17] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2636 [18] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [19] macro expansion @ ./loading.jl:2430 [inlined] [20] macro expansion @ ./lock.jl:376 [inlined] [21] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [23] top-level scope @ ~/.julia/packages/JUDI/wVmYb/ext/ZygoteJUDIExt.jl:3 [24] include(mod::Module, _path::String) @ Base ./Base.jl:303 [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [26] top-level scope @ stdin:5 [27] eval(m::Module, e::Any) @ Core ./boot.jl:489 [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [29] include_string @ ./loading.jl:2871 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [31] _start() @ Base ./client.jl:560 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/JUDI/wVmYb/ext/ZygoteJUDIExt.jl:1 in expression starting at stdin:5 FluxJUDIExt Failed to precompile FluxJUDIExt [69fb6015-e88d-5ed7-837a-bd32e4f16230] to "/home/pkgeval/.julia/compiled/v1.12/FluxJUDIExt/jl_HDXlEh". ERROR: LoadError: InitError: ConcurrencyViolationError("deadlock detected in loading pixi_jll using pixi_jll (while loading Accessors and Memoize and AbstractFFTsTestExt and DefineSingletons and BangBangChainRulesCoreExt and InplaceOps and PolynomialsChainRulesCoreExt and LinearAlgebraExt and Nullables and FLoops and NFFT and CompositionsBaseInverseFunctionsExt and MLStyle and Primes and ContextVariablesX and LazyArtifacts and ChainRulesCoreSparseArraysExt and InitialValues and JOLI and TestExt and IterativeSolvers and FluxJUDIExt and PythonCall and InverseFunctionsTestExt and Baselet and SplittablesBase and DistributedArrays and JuliaVariables and LogExpFunctionsInverseFunctionsExt and LogExpFunctionsChainRulesCoreExt and Test and SegyIO and FLoopsBase and PrettyPrint and BangBang and AbstractFFTsChainRulesCoreExt and SpecialFunctionsChainRulesCoreExt and JUDI and AbstractNFFTs and NameResolution and IntegerMathUtils and Transducers and BasicInterpolators and BangBangTablesExt and InverseFunctions and SharedArrays and CompositionsBase and InverseFunctionsDatesExt and InteractiveUtils and ChainRulesCore and MicroCollections and ArgCheck and Wavelets)") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2219 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2227 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2497 [4] _require_prelocked @ ./loading.jl:2496 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2494 [7] require(uuidkey::Base.PkgId) @ Base ./loading.jl:2492 [8] pixi_jll_module() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/CondaPkg.jl:37 [9] backend() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/backend.jl:17 [10] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/context.jl:55 [11] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/C.jl:23 [12] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1424 [13] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1412 [14] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1300 [15] _include_from_serialized (repeats 2 times) @ ./loading.jl:1246 [inlined] [16] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2111 [17] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2636 [18] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [19] macro expansion @ ./loading.jl:2430 [inlined] [20] macro expansion @ ./lock.jl:376 [inlined] [21] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [23] top-level scope @ ~/.julia/packages/JUDI/wVmYb/ext/FluxJUDIExt.jl:3 [24] include(mod::Module, _path::String) @ Base ./Base.jl:303 [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3015 [26] top-level scope @ stdin:5 [27] eval(m::Module, e::Any) @ Core ./boot.jl:489 [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [29] include_string @ ./loading.jl:2871 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:326 [31] _start() @ Base ./client.jl:560 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/JUDI/wVmYb/ext/FluxJUDIExt.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 1157.25s ################################################################################ # Testing # Testing JUDI Status `/tmp/jl_vDkDrS/Project.toml` ⌅ [4c88cf16] Aqua v0.5.6 [d360d2e6] ChainRulesCore v1.25.1 ⌅ [717857b8] DSP v0.7.10 [39dd38d3] Dierckx v0.5.4 [7a1cc6ca] FFTW v1.8.1 ⌅ [587475ba] Flux v0.14.25 [033835bb] JLD2 v0.5.12 [bb331ad6] JOLI v0.9.0 [f3b833dc] JUDI v4.1.0 [bac558e1] OrderedCollections v1.8.0 [6099a3de] PythonCall v0.9.24 [ae029012] Requires v1.3.1 [157a0f19] SegyIO v0.8.5 [a759f4b9] TimerOutputs v0.5.28 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_vDkDrS/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7f219486] AbstractNFFTs v0.8.2 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 ⌅ [4c88cf16] Aqua v0.5.6 [dce04be8] ArgCheck v2.5.0 [a9b6321e] Atomix v1.1.1 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [26cce99e] BasicInterpolators v0.7.1 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.3 [d360d2e6] ChainRulesCore v1.25.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [992eb4ea] CondaPkg v0.2.26 [187b0558] ConstructionBase v1.5.8 [6add18c4] ContextVariablesX v0.1.3 ⌅ [717857b8] DSP v0.7.10 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [39dd38d3] Dierckx v0.5.4 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [aaf54ef3] DistributedArrays v0.6.7 [ffbed154] DocStringExtensions v0.9.4 [e2ba6199] ExprTools v0.1.10 [7a1cc6ca] FFTW v1.8.1 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [5789e2e9] FileIO v1.17.0 [1a297f60] FillArrays v1.13.0 ⌅ [587475ba] Flux v0.14.25 ⌅ [f6369f11] ForwardDiff v0.10.38 ⌅ [d9f16b24] Functors v0.4.12 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [7869d1d1] IRTools v0.4.14 [22cec73e] InitialValues v0.3.1 [505f98c9] InplaceOps v0.3.0 [18e54dd8] IntegerMathUtils v0.1.2 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.12 [692b3bcd] JLLWrappers v1.7.0 [bb331ad6] JOLI v0.9.0 [0f8b85d8] JSON3 v1.14.2 [f3b833dc] JUDI v4.1.0 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.34 [929cbde3] LLVM v9.2.0 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 ⌃ [7e8f7934] MLDataDevices v1.5.3 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.15 [c03570c3] Memoize v0.4.4 [128add7d] MicroCollections v0.2.0 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.2.0 [efe261a4] NFFT v0.13.6 [872c559c] NNlib v0.9.29 [77ba4419] NaNMath v1.1.2 [71a1bf82] NameResolution v0.1.5 [4d1e1d77] Nullables v1.0.0 [0b1bfda6] OneHotArrays v0.2.6 ⌅ [3bd65402] Optimisers v0.3.4 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [fa939f87] Pidfile v1.3.0 [f27b6e38] Polynomials v4.0.19 [aea7be01] PrecompileTools v1.3.0 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [27ebfcd6] Primes v0.5.7 [33c8b6b6] ProgressLogging v0.1.4 [43287f4e] PtrArrays v1.3.0 [6099a3de] PythonCall v0.9.24 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [7e506255] ScopedValues v1.3.0 [6c6a2e73] Scratch v1.2.1 [157a0f19] SegyIO v0.8.5 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.0 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [09ab397b] StructArrays v0.7.0 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [a759f4b9] TimerOutputs v0.5.28 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.84 [013be700] UnsafeAtomics v0.3.0 [e17b2a0c] UnsafePointers v1.0.0 ⌅ [29a6e085] Wavelets v0.9.5 ⌅ [e88e6eb3] Zygote v0.6.75 [700de1a5] ZygoteRules v0.2.7 [cd4c43a9] Dierckx_jll v0.2.0+0 [f5851436] FFTW_jll v3.3.10+3 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [dad2f222] LLVMExtra_jll v0.0.35+0 [856f044c] MKL_jll v2025.0.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f8abcde7] micromamba_jll v1.5.8+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: InitError: ConcurrencyViolationError("deadlock detected in loading pixi_jll using pixi_jll (while loading Accessors and Memoize and AbstractFFTsTestExt and DefineSingletons and BangBangChainRulesCoreExt and InplaceOps and PolynomialsChainRulesCoreExt and LinearAlgebraExt and Nullables and FLoops and NFFT and CompositionsBaseInverseFunctionsExt and MLStyle and Primes and ContextVariablesX and LazyArtifacts and ChainRulesCoreSparseArraysExt and InitialValues and JOLI and TestExt and IterativeSolvers and PythonCall and InverseFunctionsTestExt and Baselet and SplittablesBase and DistributedArrays and JuliaVariables and LogExpFunctionsInverseFunctionsExt and LogExpFunctionsChainRulesCoreExt and Test and SegyIO and FLoopsBase and PrettyPrint and BangBang and AbstractFFTsChainRulesCoreExt and SpecialFunctionsChainRulesCoreExt and JUDI and AbstractNFFTs and NameResolution and IntegerMathUtils and Transducers and BasicInterpolators and BangBangTablesExt and InverseFunctions and SharedArrays and CompositionsBase and InverseFunctionsDatesExt and InteractiveUtils and ChainRulesCore and MicroCollections and ArgCheck and Wavelets)") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2219 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2227 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2497 [4] _require_prelocked @ ./loading.jl:2496 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2494 [7] require(uuidkey::Base.PkgId) @ Base ./loading.jl:2492 [8] pixi_jll_module() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/CondaPkg.jl:37 [9] backend() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/backend.jl:17 [10] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/context.jl:55 [11] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/C.jl:23 [12] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1424 [13] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1412 [14] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1300 [15] _include_from_serialized (repeats 2 times) @ ./loading.jl:1246 [inlined] [16] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2111 [17] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2636 [18] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [19] macro expansion @ ./loading.jl:2430 [inlined] [20] macro expansion @ ./lock.jl:376 [inlined] [21] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [23] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [24] top-level scope @ none:6 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:294 [27] _start() @ Base ./client.jl:560 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/JUDI/wVmYb/test/runtests.jl:9 Testing failed after 30.51s ERROR: LoadError: Package JUDI errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1641.51s: package fails to precompile