Package evaluation of GeometryOptimization on Julia 1.12.0-DEV.2153 (83dcbd426d*) started at 2025-03-31T12:41:31.994 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.63s ################################################################################ # Installation # Installing GeometryOptimization... Resolving package versions... Installed ConsoleProgressMonitor ────── v0.1.2 Installed HypergeometricFunctions ───── v0.3.28 Installed StatsFuns ─────────────────── v1.3.2 Installed Accessors ─────────────────── v0.1.42 Installed OffsetArrays ──────────────── v1.16.0 Installed Preferences ───────────────── v1.4.3 Installed MutableArithmetics ────────── v1.6.4 Installed LoggingExtras ─────────────── v1.1.0 Installed FFTW ──────────────────────── v1.8.1 Installed PDMats ────────────────────── v0.11.33 Installed TimerOutputs ──────────────── v0.5.28 Installed Unitful ───────────────────── v1.22.0 Installed DSP ───────────────────────── v0.7.10 Installed DomainSets ────────────────── v0.7.15 Installed ProgressMeter ─────────────── v1.10.2 Installed EnumX ─────────────────────── v1.0.5 Installed FunctionWrappers ──────────── v1.1.3 Installed Statistics ────────────────── v1.11.1 Installed RecursiveArrayTools ───────── v3.31.2 Installed StaticArrays ──────────────── v1.9.13 Installed IntelOpenMP_jll ───────────── v2025.0.4+0 Installed Missings ──────────────────── v1.2.0 Installed Kronecker ─────────────────── v0.5.5 Installed RealDot ───────────────────── v0.1.0 Installed FiniteDiff ────────────────── v2.27.0 Installed IrrationalConstants ───────── v0.2.4 Installed Polynomials ───────────────── v4.0.19 Installed ArnoldiMethod ─────────────── v0.4.0 Installed Bijections ────────────────── v0.1.9 Installed PtrArrays ─────────────────── v1.3.0 Installed CompositeTypes ────────────── v0.1.4 Installed MultivariatePolynomials ───── v0.5.7 Installed LinearMaps ────────────────── v3.11.4 Installed AtomsBase ─────────────────── v0.5.1 Installed ADTypes ───────────────────── v1.14.0 Installed ProgressLogging ───────────── v0.1.4 Installed SpecialFunctions ──────────── v2.5.0 Installed SciMLBase ─────────────────── v2.81.0 Installed AtomsCalculators ──────────── v0.2.3 Installed IfElse ────────────────────── v0.1.1 Installed Einsum ────────────────────── v0.4.1 Installed StaticArraysCore ──────────── v1.4.3 Installed Symbolics ─────────────────── v6.34.0 Installed NaNMath ───────────────────── v1.1.2 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed NLSolversBase ─────────────── v7.9.0 Installed CommonSubexpressions ──────── v0.3.1 Installed LeftChildRightSiblingTrees ── v0.2.0 Installed GeometryOptimization ──────── v0.1.2 Installed HybridArrays ──────────────── v0.4.16 Installed DataStructures ────────────── v0.18.22 Installed ExprTools ─────────────────── v0.1.10 Installed OptimizationOptimJL ───────── v0.3.2 Installed StatsAPI ──────────────────── v1.7.0 Installed CommonWorldInvalidations ──── v1.0.0 Installed Compat ────────────────────── v4.16.0 Installed NamedDims ─────────────────── v1.2.2 Installed StatsBase ─────────────────── v0.34.4 Installed DynamicPolynomials ────────── v0.6.1 Installed PeriodicTable ─────────────── v1.2.1 Installed DiffRules ─────────────────── v1.15.1 Installed SciMLStructures ───────────── v1.7.0 Installed FunctionWrappersWrappers ──── v0.1.3 Installed oneTBB_jll ────────────────── v2022.0.0+0 Installed TableTraits ───────────────── v1.0.1 Installed Inflate ───────────────────── v0.1.5 Installed Graphs ────────────────────── v1.12.0 Installed DiffResults ───────────────── v1.1.0 Installed Manifolds ─────────────────── v0.9.20 Installed PrettyTables ──────────────── v2.4.0 Installed LBFGSB ────────────────────── v0.4.1 Installed PositiveFactorizations ────── v0.2.4 Installed MKL_jll ───────────────────── v2025.0.1+1 Installed Setfield ──────────────────── v1.1.2 Installed SciMLOperators ────────────── v0.3.13 Installed Format ────────────────────── v1.3.7 Installed MatrixEquations ───────────── v2.4.5 Installed JLLWrappers ───────────────── v1.7.0 Installed SymbolicLimits ────────────── v0.2.2 Installed AbstractFFTs ──────────────── v1.5.0 Installed ConstructionBase ──────────── v1.5.8 Installed DataValueInterfaces ───────── v1.0.0 Installed ExproniconLite ────────────── v0.10.14 Installed AbstractTrees ─────────────── v0.4.5 Installed Indexing ──────────────────── v1.1.1 Installed OrderedCollections ────────── v1.8.0 Installed Combinatorics ─────────────── v1.0.2 Installed ChainRulesCore ────────────── v1.25.1 Installed Reexport ──────────────────── v1.2.2 Installed ArrayInterface ────────────── v7.18.0 Installed TerminalLoggers ───────────── v0.1.7 Installed LineSearches ──────────────── v7.3.0 Installed ManifoldDiff ──────────────── v0.3.13 Installed LogExpFunctions ───────────── v0.3.29 Installed SymbolicAnalysis ──────────── v0.3.0 Installed FFTW_jll ──────────────────── v3.3.10+3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed CompositionsBase ──────────── v0.1.2 Installed UnPack ────────────────────── v1.0.2 Installed AliasTables ───────────────── v1.1.3 Installed MacroTools ────────────────── v0.5.15 Installed InverseFunctions ──────────── v0.1.17 Installed Quaternions ───────────────── v0.7.6 Installed GPUArraysCore ─────────────── v0.2.0 Installed Crayons ───────────────────── v4.1.1 Installed SimpleTraits ──────────────── v0.9.4 Installed Adapt ─────────────────────── v4.3.0 Installed TaskLocalValues ───────────── v0.1.2 Installed CommonSolve ───────────────── v0.2.4 Installed DocStringExtensions ───────── v0.9.4 Installed Rmath ─────────────────────── v0.8.0 Installed IntegerMathUtils ──────────── v0.1.2 Installed L_BFGS_B_jll ──────────────── v3.0.1+0 Installed IntervalSets ──────────────── v0.7.10 Installed IterTools ─────────────────── v1.10.0 Installed Latexify ──────────────────── v0.16.6 Installed RuntimeGeneratedFunctions ─── v0.5.13 Installed Jieko ─────────────────────── v0.2.1 Installed SimpleWeightedGraphs ──────── v1.5.0 Installed Tables ────────────────────── v1.12.0 Installed DifferentiationInterface ──── v0.6.49 Installed TermInterface ─────────────── v2.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed Dictionaries ──────────────── v0.4.4 Installed Primes ────────────────────── v0.5.7 Installed SymbolicUtils ─────────────── v3.24.1 Installed RecipesBase ───────────────── v1.3.4 Installed Moshi ─────────────────────── v0.3.5 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Optimization ──────────────── v3.28.0 Installed Unityper ──────────────────── v0.1.6 Installed LaTeXStrings ──────────────── v1.4.0 Installed PrecompileTools ───────────── v1.3.0 Installed Optim ─────────────────────── v1.11.0 Installed WeakValueDicts ────────────── v0.1.0 Installed SymbolicIndexingInterface ─── v0.3.38 Installed UnitfulAtomic ─────────────── v1.0.0 Installed QuadGK ────────────────────── v2.11.2 Installed Requires ──────────────────── v1.3.1 Installed FillArrays ────────────────── v1.13.0 Installed ForwardDiff ───────────────── v0.10.38 Installed Parameters ────────────────── v0.12.3 Installed StringManipulation ────────── v0.4.1 Installed OptimizationBase ──────────── v1.5.0 Installed SortingAlgorithms ─────────── v1.2.1 Installed Distributions ─────────────── v0.25.118 Installed ManifoldsBase ─────────────── v0.15.24 Installing 5 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact L_BFGS_B 45.2 KiB Installed artifact FFTW 2.2 MiB Installed artifact oneTBB 435.6 KiB Updating `~/.julia/environments/v1.12/Project.toml` [673bf261] + GeometryOptimization v0.1.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.18.0 [a963bdd2] + AtomsBase v0.5.1 [a3e0e189] + AtomsCalculators v0.2.3 [e2ed5e7c] + Bijections v0.1.9 [d360d2e6] + ChainRulesCore v1.25.1 [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.5.8 [a8cc5b0e] + Crayons v4.1.1 ⌅ [717857b8] + DSP v0.7.10 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [85a47980] + Dictionaries v0.4.4 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.49 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.4 [5b8099bc] + DomainSets v0.7.15 [7c1d4256] + DynamicPolynomials v0.6.1 [b7d42ee7] + Einsum v0.4.1 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7a1cc6ca] + FFTW v1.8.1 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [673bf261] + GeometryOptimization v0.1.2 [86223c79] + Graphs v1.12.0 [1baab800] + HybridArrays v0.4.16 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.2 [8197267c] + IntervalSets v0.7.10 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [ae98c720] + Jieko v0.2.1 [2c470bb0] + Kronecker v0.5.5 [5be7bae1] + LBFGSB v0.4.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.6 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.0 [d3d80556] + LineSearches v7.3.0 [7a12625a] + LinearMaps v3.11.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [1914dd2f] + MacroTools v0.5.15 ⌅ [af67fdf4] + ManifoldDiff v0.3.13 ⌅ [1cead3c2] + Manifolds v0.9.20 ⌅ [3362f125] + ManifoldsBase v0.15.24 [99c1a7ee] + MatrixEquations v2.4.5 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.5 [102ac46a] + MultivariatePolynomials v0.5.7 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.9.0 [77ba4419] + NaNMath v1.1.2 [356022a1] + NamedDims v1.2.2 [6fe1bfb0] + OffsetArrays v1.16.0 [429524aa] + Optim v1.11.0 ⌅ [7f7a1694] + Optimization v3.28.0 ⌅ [bca83a33] + OptimizationBase v1.5.0 ⌅ [36348300] + OptimizationOptimJL v0.3.2 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.33 [d96e819e] + Parameters v0.12.3 [7b2266bf] + PeriodicTable v1.2.1 [f27b6e38] + Polynomials v4.0.19 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.0 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [27ebfcd6] + Primes v0.5.7 [33c8b6b6] + ProgressLogging v0.1.4 [92933f4c] + ProgressMeter v1.10.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [94ee1d12] + Quaternions v0.7.6 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.31.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.13 [0bca4576] + SciMLBase v2.81.0 [c0aeaf25] + SciMLOperators v0.3.13 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.4 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [892a3eda] + StringManipulation v0.4.1 [4297ee4d] + SymbolicAnalysis v0.3.0 [2efcf032] + SymbolicIndexingInterface v0.3.38 [19f23fe9] + SymbolicLimits v0.2.2 [d1185830] + SymbolicUtils v3.24.1 [0c5d862f] + Symbolics v6.34.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [ed4db957] + TaskLocalValues v0.1.2 [8ea1fca8] + TermInterface v2.0.0 [5d786b92] + TerminalLoggers v0.1.7 [a759f4b9] + TimerOutputs v0.5.28 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.22.0 [a7773ee8] + UnitfulAtomic v1.0.0 [a7c27f48] + Unityper v0.1.6 [897b6980] + WeakValueDicts v0.1.0 [f5851436] + FFTW_jll v3.3.10+3 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [81d17ec3] + L_BFGS_B_jll v3.0.1+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 15.35s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6882.5 ms ✓ TestEnv 1 dependency successfully precompiled in 9 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 1494.26s ################################################################################ # Testing # Testing GeometryOptimization Status `/tmp/jl_UBlaqG/Project.toml` [3da9722f] ASEconvert v0.1.8 [a963bdd2] AtomsBase v0.5.1 [f5cc8831] AtomsBuilder v0.2.2 [a3e0e189] AtomsCalculators v0.2.3 [ffbed154] DocStringExtensions v0.9.4 [673bf261] GeometryOptimization v0.1.2 [d3d80556] LineSearches v7.3.0 ⌅ [7f7a1694] Optimization v3.28.0 ⌅ [36348300] OptimizationOptimJL v0.3.2 [08abe8d2] PrettyTables v2.4.0 [6099a3de] PythonCall v0.9.24 [90137ffa] StaticArrays v1.9.13 ⌅ [f8b46487] TestItemRunner v0.2.3 [a759f4b9] TimerOutputs v0.5.28 [1986cc42] Unitful v1.22.0 [a7773ee8] UnitfulAtomic v1.0.0 [37e2e46d] LinearAlgebra v1.12.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_UBlaqG/Manifest.toml` [47edcb42] ADTypes v1.14.0 [3da9722f] ASEconvert v0.1.8 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [a963bdd2] AtomsBase v0.5.1 [f5cc8831] AtomsBuilder v0.2.2 [a3e0e189] AtomsCalculators v0.2.3 [e2ed5e7c] Bijections v0.1.9 [d360d2e6] ChainRulesCore v1.25.1 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [992eb4ea] CondaPkg v0.2.26 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.5.8 [a8cc5b0e] Crayons v4.1.1 ⌅ [717857b8] DSP v0.7.10 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [85a47980] Dictionaries v0.4.4 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.6.49 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [5b8099bc] DomainSets v0.7.15 [7c1d4256] DynamicPolynomials v0.6.1 [b7d42ee7] Einsum v0.4.1 [4e289a0a] EnumX v1.0.5 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7a1cc6ca] FFTW v1.8.1 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [1fa38f19] Format v1.3.7 ⌅ [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [673bf261] GeometryOptimization v0.1.2 [86223c79] Graphs v1.12.0 [1baab800] HybridArrays v0.4.16 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [313cdc1a] Indexing v1.1.1 [d25df0c9] Inflate v0.1.5 [18e54dd8] IntegerMathUtils v0.1.2 [8197267c] IntervalSets v0.7.10 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.2 [ae98c720] Jieko v0.2.1 [2c470bb0] Kronecker v0.5.5 [5be7bae1] LBFGSB v0.4.1 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.6 [1d6d02ad] LeftChildRightSiblingTrees v0.2.0 [d3d80556] LineSearches v7.3.0 [7a12625a] LinearMaps v3.11.4 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [1914dd2f] MacroTools v0.5.15 ⌅ [af67fdf4] ManifoldDiff v0.3.13 ⌅ [1cead3c2] Manifolds v0.9.20 ⌅ [3362f125] ManifoldsBase v0.15.24 [99c1a7ee] MatrixEquations v2.4.5 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.5 [102ac46a] MultivariatePolynomials v0.5.7 [d8a4904e] MutableArithmetics v1.6.4 [d41bc354] NLSolversBase v7.9.0 [77ba4419] NaNMath v1.1.2 [356022a1] NamedDims v1.2.2 [6fe1bfb0] OffsetArrays v1.16.0 [429524aa] Optim v1.11.0 ⌅ [7f7a1694] Optimization v3.28.0 ⌅ [bca83a33] OptimizationBase v1.5.0 ⌅ [36348300] OptimizationOptimJL v0.3.2 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.1 [7b2266bf] PeriodicTable v1.2.1 [fa939f87] Pidfile v1.3.0 [f27b6e38] Polynomials v4.0.19 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.0 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [27ebfcd6] Primes v0.5.7 [33c8b6b6] ProgressLogging v0.1.4 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [6099a3de] PythonCall v0.9.24 [1fd47b50] QuadGK v2.11.2 [94ee1d12] Quaternions v0.7.6 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.31.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.13 [0bca4576] SciMLBase v2.81.0 [c0aeaf25] SciMLOperators v0.3.13 [53ae85a6] SciMLStructures v1.7.0 [6c6a2e73] Scratch v1.2.1 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.4 [47aef6b3] SimpleWeightedGraphs v1.5.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [892a3eda] StringManipulation v0.4.1 [856f2bd8] StructTypes v1.11.0 [4297ee4d] SymbolicAnalysis v0.3.0 [2efcf032] SymbolicIndexingInterface v0.3.38 [19f23fe9] SymbolicLimits v0.2.2 [d1185830] SymbolicUtils v3.24.1 [0c5d862f] Symbolics v6.34.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [ed4db957] TaskLocalValues v0.1.2 [8ea1fca8] TermInterface v2.0.0 [5d786b92] TerminalLoggers v0.1.7 ⌅ [f8b46487] TestItemRunner v0.2.3 ⌅ [1c621080] TestItems v0.1.1 [a759f4b9] TimerOutputs v0.5.28 [3a884ed6] UnPack v1.0.2 [1986cc42] Unitful v1.22.0 [a7773ee8] UnitfulAtomic v1.0.0 [a7c27f48] Unityper v0.1.6 [e17b2a0c] UnsafePointers v1.0.0 [897b6980] WeakValueDicts v0.1.0 [f5851436] FFTW_jll v3.3.10+3 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [81d17ec3] L_BFGS_B_jll v3.0.1+0 [856f044c] MKL_jll v2025.0.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [f8abcde7] micromamba_jll v1.5.8+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Geometry optimisation convergence (in atomic units) ┌─────┬─────────────────┬───────────┬────────────┬────────┐ │ n │ Energy │ log10(ΔE) │ max(Force) │ Δtime │ ├─────┼─────────────────┼───────────┼────────────┼────────┤ │ 0 │ +0.000000000000 │ │ │ 19.1s │ Geometry optimisation convergence (in atomic units) ┌─────┬─────────────────┬───────────┬────────────┬────────┐ │ n │ Energy │ log10(ΔE) │ max(Force) │ Δtime │ ├─────┼─────────────────┼───────────┼────────────┼────────┤ │ 0 │ +0.000000000000 │ │ │ 1.07ms │ Geometry optimisation convergence (in atomic units) ┌─────┬─────────────────┬───────────┬────────────┬────────┐ │ n │ Energy │ log10(ΔE) │ max(Force) │ Δtime │ ├─────┼─────────────────┼───────────┼────────────┼────────┤ │ 0 │ +0.000000000000 │ │ │ 4.32s │ Geometry optimisation convergence (in atomic units) ┌─────┬─────────────────┬───────────┬────────────┬────────┐ │ n │ Energy │ log10(ΔE) │ max(Force) │ Δtime │ ├─────┼─────────────────┼───────────┼────────────┼────────┤ │ 0 │ +0.000000000000 │ │ │ 2.37s │ ERROR: LoadError: InitError: ConcurrencyViolationError("deadlock detected in loading pixi_jll using pixi_jll (while loading LazyArtifacts and ASEconvert and PythonCall)") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2219 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2227 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2497 [4] _require_prelocked @ ./loading.jl:2496 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2494 [7] require(uuidkey::Base.PkgId) @ Base ./loading.jl:2492 [8] pixi_jll_module() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/CondaPkg.jl:37 [9] backend() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/backend.jl:17 [10] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/context.jl:55 [11] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/C.jl:23 [12] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1424 [13] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1412 [14] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1300 [15] _include_from_serialized (repeats 2 times) @ ./loading.jl:1246 [inlined] [16] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2111 [17] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2636 [18] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [19] macro expansion @ ./loading.jl:2430 [inlined] [20] macro expansion @ ./lock.jl:376 [inlined] [21] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2861 [25] include_string(m::Module, txt::String, fname::String) @ Base ./loading.jl:2871 [26] #run_testitem##0 @ ~/.julia/packages/TestItemRunner/uEMJE/src/TestItemRunner.jl:102 [inlined] [27] withpath(f::TestItemRunner.var"#run_testitem##0#run_testitem##1"{String, String, Module}, path::String) @ TestItemRunner ~/.julia/packages/TestItemRunner/uEMJE/src/vendored_code.jl:7 [28] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet) @ TestItemRunner ~/.julia/packages/TestItemRunner/uEMJE/src/TestItemRunner.jl:101 [29] run_tests(path::String; filter::Nothing, verbose::Bool) @ TestItemRunner ~/.julia/packages/TestItemRunner/uEMJE/src/TestItemRunner.jl:185 [30] top-level scope @ ~/.julia/packages/GeometryOptimization/A4i1q/test/runtests.jl:2 [31] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [32] top-level scope @ none:6 [33] eval(m::Module, e::Any) @ Core ./boot.jl:489 [34] exec_options(opts::Base.JLOptions) @ Base ./client.jl:294 [35] _start() @ Base ./client.jl:560 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/GeometryOptimization/A4i1q/test/minimization.jl:3 in expression starting at /home/pkgeval/.julia/packages/GeometryOptimization/A4i1q/test/runtests.jl:2 Testing failed after 151.1s ERROR: LoadError: Package GeometryOptimization errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1708.95s: package tests unexpectedly errored