Package evaluation of GNNGraphs on Julia 1.12.0-DEV.2153 (83dcbd426d*) started at 2025-03-31T12:27:17.017


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.21s


################################################################################
# Installation
#

Installing GNNGraphs...
   Resolving package versions...
    Updating `~/.julia/environments/v1.12/Project.toml`
  [aed8fd31] + GNNGraphs v1.4.2
    Updating `~/.julia/environments/v1.12/Manifest.toml`
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.3.0
  [66dad0bd] + AliasTables v1.1.3
  [dce04be8] + ArgCheck v2.5.0
  [ec485272] + ArnoldiMethod v0.4.0
  [a9b6321e] + Atomix v1.1.1
  [a963bdd2] + AtomsBase v0.5.1
  [ab4f0b2a] + BFloat16s v0.5.1
  [198e06fe] + BangBang v0.4.4
  [9718e550] + Baselet v0.1.1
  [d1d4a3ce] + BitFlags v0.1.9
  [e1450e63] + BufferedStreams v1.2.2
  [336ed68f] + CSV v0.10.15
  [d360d2e6] + ChainRulesCore v1.25.1
  [46823bd8] + Chemfiles v0.10.42
  [944b1d66] + CodecZlib v0.7.8
  [35d6a980] + ColorSchemes v3.29.0
  [3da002f7] + ColorTypes v0.12.0
  [c3611d14] + ColorVectorSpace v0.11.0
  [5ae59095] + Colors v0.13.0
  [34da2185] + Compat v4.16.0
  [a33af91c] + CompositionsBase v0.1.2
  [f0e56b4a] + ConcurrentUtilities v2.5.0
  [187b0558] + ConstructionBase v1.5.8
  [6add18c4] + ContextVariablesX v0.1.3
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [124859b0] + DataDeps v0.7.13
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [244e2a9f] + DefineSingletons v0.1.2
  [8bb1440f] + DelimitedFiles v1.9.1
  [b4f34e82] + Distances v0.10.12
  [ffbed154] + DocStringExtensions v0.9.4
  [460bff9d] + ExceptionUnwrapping v0.1.11
  [cc61a311] + FLoops v0.2.2
  [b9860ae5] + FLoopsBase v0.1.1
  [5789e2e9] + FileIO v1.17.0
  [48062228] + FilePathsBase v0.9.24
  [53c48c17] + FixedPointNumbers v0.8.5
  [d9f16b24] + Functors v0.5.2
  [aed8fd31] + GNNGraphs v1.4.2
  [46192b85] + GPUArraysCore v0.2.0
  [92fee26a] + GZip v0.6.2
  [c27321d9] + Glob v1.3.1
  [86223c79] + Graphs v1.12.0
  [f67ccb44] + HDF5 v0.17.2
  [cd3eb016] + HTTP v1.10.15
  [076d061b] + HashArrayMappedTries v0.2.0
  [c817782e] + ImageBase v0.1.7
  [a09fc81d] + ImageCore v0.10.5
  [4e3cecfd] + ImageShow v0.3.8
  [d25df0c9] + Inflate v0.1.5
  [22cec73e] + InitialValues v0.3.1
  [842dd82b] + InlineStrings v1.4.3
  [7d512f48] + InternedStrings v0.7.0
  [3587e190] + InverseFunctions v0.1.17
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [033835bb] + JLD2 v0.5.12
  [692b3bcd] + JLLWrappers v1.7.0
  [0f8b85d8] + JSON3 v1.14.2
  [b14d175d] + JuliaVariables v0.2.4
  [63c18a36] + KernelAbstractions v0.9.34
  [0b1a1467] + KrylovKit v0.9.5
  [b964fa9f] + LaTeXStrings v1.4.0
  [8cdb02fc] + LazyModules v0.3.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e6f89c97] + LoggingExtras v1.1.0
  [23992714] + MAT v0.10.7
  [c2834f40] + MLCore v1.0.0
  [7e8f7934] + MLDataDevices v1.9.1
  [eb30cadb] + MLDatasets v0.7.18
  [d8e11817] + MLStyle v0.4.17
  [f1d291b0] + MLUtils v0.4.8
  [3da0fdf6] + MPIPreferences v0.1.11
  [1914dd2f] + MacroTools v0.5.15
  [dbb5928d] + MappedArrays v0.4.2
  [739be429] + MbedTLS v1.1.9
  [128add7d] + MicroCollections v0.2.0
  [e1d29d7a] + Missings v1.2.0
  [e94cdb99] + MosaicViews v0.3.4
  [872c559c] + NNlib v0.9.29
  [15e1cf62] + NPZ v0.4.3
  [71a1bf82] + NameResolution v0.1.5
  [b8a86587] + NearestNeighbors v0.4.21
  [6fe1bfb0] + OffsetArrays v1.16.0
  [4d8831e6] + OpenSSL v1.4.3
  [bac558e1] + OrderedCollections v1.8.0
  [65ce6f38] + PackageExtensionCompat v1.0.2
  [5432bcbf] + PaddedViews v0.5.12
  [69de0a69] + Parsers v2.8.1
  [7b2266bf] + PeriodicTable v1.2.1
  [fbb45041] + Pickle v0.3.5
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.0
  [21216c6a] + Preferences v1.4.3
  [8162dcfd] + PrettyPrint v0.2.0
  [08abe8d2] + PrettyTables v2.4.0
  [43287f4e] + PtrArrays v1.3.0
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [7e506255] + ScopedValues v1.3.0
  [6c6a2e73] + Scratch v1.2.1
  [91c51154] + SentinelArrays v1.4.8
  [efcf1570] + Setfield v1.1.2
  [605ecd9f] + ShowCases v0.1.0
  [777ac1f9] + SimpleBufferStream v1.2.0
  [699a6c99] + SimpleTraits v0.9.4
  [a2af1166] + SortingAlgorithms v1.2.1
  [171d559e] + SplittablesBase v0.1.15
  [cae243ae] + StackViews v0.1.1
  [90137ffa] + StaticArrays v1.9.13
  [1e83bf80] + StaticArraysCore v1.4.3
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.4
⌅ [4db3bf67] + StridedViews v0.2.2
  [69024149] + StringEncodings v0.3.7
  [892a3eda] + StringManipulation v0.4.1
  [856f2bd8] + StructTypes v1.11.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [62fd8b95] + TensorCore v0.1.1
  [3bb67fe8] + TranscodingStreams v0.11.3
  [28d57a85] + Transducers v0.4.84
  [5c2747f8] + URIs v1.5.2
  [1986cc42] + Unitful v1.22.0
  [a7773ee8] + UnitfulAtomic v1.0.0
  [013be700] + UnsafeAtomics v0.3.0
  [409d34a3] + VectorInterface v0.5.0
  [ea10d353] + WeakRefStrings v1.4.2
  [76eceee3] + WorkerUtilities v1.6.1
  [a5390f91] + ZipFile v0.10.1
  [78a364fa] + Chemfiles_jll v0.10.4+0
  [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.0+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [7cb0a576] + MPICH_jll v4.3.0+1
  [f1f71cc9] + MPItrampoline_jll v5.5.3+0
  [c8ffd9c3] + MbedTLS_jll v2.28.6+2
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] + OpenMPI_jll v5.0.7+1
  [477f73a3] + libaec_jll v1.1.3+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.12.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.11.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2024.12.31
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [458c3c95] + OpenSSL_jll v3.0.16+0
  [bea87d4a] + SuiteSparse_jll v7.8.3+2
  [83775a58] + Zlib_jll v1.3.1+2
  [8e850b90] + libblastrampoline_jll v5.12.0+0
  [8e850ede] + nghttp2_jll v1.64.0+1
  [3f19e933] + p7zip_jll v17.5.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 9.09s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

┌ Warning: Could not use exact versions of packages in manifest, re-resolving
└ @ TestEnv ~/.julia/packages/TestEnv/tgnBf/src/julia-1.11/activate_set.jl:63
Precompiling package dependencies...

Precompilation completed after 484.33s


################################################################################
# Testing
#

     Testing GNNGraphs
        Test Could not use exact versions of packages in manifest. Re-resolving dependencies
    Updating `/tmp/jl_r9WYNb/Project.toml`
  [26cc04aa] + FiniteDifferences v0.12.32
⌅ [46192b85] ↓ GPUArraysCore v0.2.0 ⇒ v0.1.6
  [47aef6b3] + SimpleWeightedGraphs v1.5.0
  [860ef19b] + StableRNGs v1.0.2
  [f8b46487] + TestItemRunner v1.1.0
  [1c621080] + TestItems v1.0.0
  [e88e6eb3] + Zygote v0.7.5
    Updating `/tmp/jl_r9WYNb/Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
  [082447d4] + ChainRules v1.72.3
  [bbf7d656] + CommonSubexpressions v0.3.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [1a297f60] + FillArrays v1.13.0
  [26cc04aa] + FiniteDifferences v0.12.32
⌃ [f6369f11] + ForwardDiff v0.10.38
⌅ [46192b85] ↓ GPUArraysCore v0.2.0 ⇒ v0.1.6
  [7869d1d1] + IRTools v0.4.14
  [77ba4419] + NaNMath v1.1.2
  [c1ae055f] + RealDot v0.1.0
  [708f8203] + Richardson v1.4.2
  [47aef6b3] + SimpleWeightedGraphs v1.5.0
  [dc90abb0] + SparseInverseSubset v0.1.2
  [276daf66] + SpecialFunctions v2.5.0
  [860ef19b] + StableRNGs v1.0.2
⌃ [09ab397b] + StructArrays v0.6.18
  [f8b46487] + TestItemRunner v1.1.0
  [1c621080] + TestItems v1.0.0
  [e88e6eb3] + Zygote v0.7.5
  [700de1a5] + ZygoteRules v0.2.7
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [4607b0f0] + SuiteSparse
  [05823500] + OpenLibm_jll v0.8.5+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
        Test Successfully re-resolved
      Status `/tmp/jl_r9WYNb/Project.toml`
  [26cc04aa] FiniteDifferences v0.12.32
  [d9f16b24] Functors v0.5.2
  [aed8fd31] GNNGraphs v1.4.2
⌅ [46192b85] GPUArraysCore v0.1.6
  [86223c79] Graphs v1.12.0
  [7e8f7934] MLDataDevices v1.9.1
  [eb30cadb] MLDatasets v0.7.18
  [f1d291b0] MLUtils v0.4.8
  [872c559c] NNlib v0.9.29
  [189a3867] Reexport v1.2.2
  [47aef6b3] SimpleWeightedGraphs v1.5.0
  [860ef19b] StableRNGs v1.0.2
  [10745b16] Statistics v1.11.1
  [f8b46487] TestItemRunner v1.1.0
  [1c621080] TestItems v1.0.0
  [e88e6eb3] Zygote v0.7.5
  [37e2e46d] LinearAlgebra v1.12.0
  [44cfe95a] Pkg v1.12.0
  [9a3f8284] Random v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_r9WYNb/Manifest.toml`
  [621f4979] AbstractFFTs v1.5.0
  [7d9f7c33] Accessors v0.1.42
  [79e6a3ab] Adapt v4.3.0
  [66dad0bd] AliasTables v1.1.3
  [dce04be8] ArgCheck v2.5.0
  [ec485272] ArnoldiMethod v0.4.0
  [a9b6321e] Atomix v1.1.1
  [a963bdd2] AtomsBase v0.5.1
  [ab4f0b2a] BFloat16s v0.5.1
  [198e06fe] BangBang v0.4.4
  [9718e550] Baselet v0.1.1
  [d1d4a3ce] BitFlags v0.1.9
  [e1450e63] BufferedStreams v1.2.2
  [336ed68f] CSV v0.10.15
  [082447d4] ChainRules v1.72.3
  [d360d2e6] ChainRulesCore v1.25.1
  [46823bd8] Chemfiles v0.10.42
  [944b1d66] CodecZlib v0.7.8
  [35d6a980] ColorSchemes v3.29.0
  [3da002f7] ColorTypes v0.12.0
  [c3611d14] ColorVectorSpace v0.11.0
  [5ae59095] Colors v0.13.0
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.16.0
  [a33af91c] CompositionsBase v0.1.2
  [f0e56b4a] ConcurrentUtilities v2.5.0
  [187b0558] ConstructionBase v1.5.8
  [6add18c4] ContextVariablesX v0.1.3
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [124859b0] DataDeps v0.7.13
  [a93c6f00] DataFrames v1.7.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [244e2a9f] DefineSingletons v0.1.2
  [8bb1440f] DelimitedFiles v1.9.1
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [b4f34e82] Distances v0.10.12
  [ffbed154] DocStringExtensions v0.9.4
  [460bff9d] ExceptionUnwrapping v0.1.11
  [cc61a311] FLoops v0.2.2
  [b9860ae5] FLoopsBase v0.1.1
  [5789e2e9] FileIO v1.17.0
  [48062228] FilePathsBase v0.9.24
  [1a297f60] FillArrays v1.13.0
  [26cc04aa] FiniteDifferences v0.12.32
  [53c48c17] FixedPointNumbers v0.8.5
⌃ [f6369f11] ForwardDiff v0.10.38
  [d9f16b24] Functors v0.5.2
  [aed8fd31] GNNGraphs v1.4.2
⌅ [46192b85] GPUArraysCore v0.1.6
  [92fee26a] GZip v0.6.2
  [c27321d9] Glob v1.3.1
  [86223c79] Graphs v1.12.0
  [f67ccb44] HDF5 v0.17.2
  [cd3eb016] HTTP v1.10.15
  [076d061b] HashArrayMappedTries v0.2.0
  [7869d1d1] IRTools v0.4.14
  [c817782e] ImageBase v0.1.7
  [a09fc81d] ImageCore v0.10.5
  [4e3cecfd] ImageShow v0.3.8
  [d25df0c9] Inflate v0.1.5
  [22cec73e] InitialValues v0.3.1
  [842dd82b] InlineStrings v1.4.3
  [7d512f48] InternedStrings v0.7.0
  [3587e190] InverseFunctions v0.1.17
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [033835bb] JLD2 v0.5.12
  [692b3bcd] JLLWrappers v1.7.0
  [0f8b85d8] JSON3 v1.14.2
  [b14d175d] JuliaVariables v0.2.4
  [63c18a36] KernelAbstractions v0.9.34
  [0b1a1467] KrylovKit v0.9.5
  [b964fa9f] LaTeXStrings v1.4.0
  [8cdb02fc] LazyModules v0.3.1
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e6f89c97] LoggingExtras v1.1.0
  [23992714] MAT v0.10.7
  [c2834f40] MLCore v1.0.0
  [7e8f7934] MLDataDevices v1.9.1
  [eb30cadb] MLDatasets v0.7.18
  [d8e11817] MLStyle v0.4.17
  [f1d291b0] MLUtils v0.4.8
  [3da0fdf6] MPIPreferences v0.1.11
  [1914dd2f] MacroTools v0.5.15
  [dbb5928d] MappedArrays v0.4.2
  [739be429] MbedTLS v1.1.9
  [128add7d] MicroCollections v0.2.0
  [e1d29d7a] Missings v1.2.0
  [e94cdb99] MosaicViews v0.3.4
  [872c559c] NNlib v0.9.29
  [15e1cf62] NPZ v0.4.3
  [77ba4419] NaNMath v1.1.2
  [71a1bf82] NameResolution v0.1.5
  [b8a86587] NearestNeighbors v0.4.21
  [6fe1bfb0] OffsetArrays v1.16.0
  [4d8831e6] OpenSSL v1.4.3
  [bac558e1] OrderedCollections v1.8.0
  [65ce6f38] PackageExtensionCompat v1.0.2
  [5432bcbf] PaddedViews v0.5.12
  [69de0a69] Parsers v2.8.1
  [7b2266bf] PeriodicTable v1.2.1
  [fbb45041] Pickle v0.3.5
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.0
  [21216c6a] Preferences v1.4.3
  [8162dcfd] PrettyPrint v0.2.0
  [08abe8d2] PrettyTables v2.4.0
  [43287f4e] PtrArrays v1.3.0
  [c1ae055f] RealDot v0.1.0
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [708f8203] Richardson v1.4.2
  [7e506255] ScopedValues v1.3.0
  [6c6a2e73] Scratch v1.2.1
  [91c51154] SentinelArrays v1.4.8
  [efcf1570] Setfield v1.1.2
  [605ecd9f] ShowCases v0.1.0
  [777ac1f9] SimpleBufferStream v1.2.0
  [699a6c99] SimpleTraits v0.9.4
  [47aef6b3] SimpleWeightedGraphs v1.5.0
  [a2af1166] SortingAlgorithms v1.2.1
  [dc90abb0] SparseInverseSubset v0.1.2
  [276daf66] SpecialFunctions v2.5.0
  [171d559e] SplittablesBase v0.1.15
  [860ef19b] StableRNGs v1.0.2
  [cae243ae] StackViews v0.1.1
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.4
⌅ [4db3bf67] StridedViews v0.2.2
  [69024149] StringEncodings v0.3.7
  [892a3eda] StringManipulation v0.4.1
⌃ [09ab397b] StructArrays v0.6.18
  [856f2bd8] StructTypes v1.11.0
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [62fd8b95] TensorCore v0.1.1
  [f8b46487] TestItemRunner v1.1.0
  [1c621080] TestItems v1.0.0
  [3bb67fe8] TranscodingStreams v0.11.3
  [28d57a85] Transducers v0.4.84
  [5c2747f8] URIs v1.5.2
  [1986cc42] Unitful v1.22.0
  [a7773ee8] UnitfulAtomic v1.0.0
  [013be700] UnsafeAtomics v0.3.0
  [409d34a3] VectorInterface v0.5.0
  [ea10d353] WeakRefStrings v1.4.2
  [76eceee3] WorkerUtilities v1.6.1
  [a5390f91] ZipFile v0.10.1
  [e88e6eb3] Zygote v0.7.5
  [700de1a5] ZygoteRules v0.2.7
  [78a364fa] Chemfiles_jll v0.10.4+0
  [0234f1f7] HDF5_jll v1.14.6+0
  [e33a78d0] Hwloc_jll v2.12.0+0
  [94ce4f54] Libiconv_jll v1.18.0+0
  [7cb0a576] MPICH_jll v4.3.0+1
  [f1f71cc9] MPItrampoline_jll v5.5.3+0
  [c8ffd9c3] MbedTLS_jll v2.28.6+2
  [9237b28f] MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] OpenMPI_jll v5.0.7+1
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [477f73a3] libaec_jll v1.1.3+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.12.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.11.1+1
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2024.12.31
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.5+0
  [458c3c95] OpenSSL_jll v3.0.16+0
  [bea87d4a] SuiteSparse_jll v7.8.3+2
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.12.0+0
  [8e850ede] nghttp2_jll v1.64.0+1
  [3f19e933] p7zip_jll v17.5.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
Precompiling packages...
  35194.0 ms  ✓ NNlib
  32841.9 ms  ✓ MLUtils
  2 dependencies successfully precompiled in 70 seconds. 97 already precompiled.
Precompiling packages...
   5754.4 ms  ✓ StructArrays
   1381.3 ms  ✓ StructArrays → StructArraysAdaptExt
   1658.7 ms  ✓ StructArrays → StructArraysSparseArraysExt
   1200.9 ms  ✓ StructArrays → StructArraysGPUArraysCoreExt
  13490.5 ms  ✓ ChainRules
Info Given Zygote was explicitly requested, output will be shown live 
WARNING: Constructor for type "Variable" was extended in `Zygote` without explicit qualification or import.
  NOTE: Assumed "Variable" refers to `IRTools.Variable`. This behavior is deprecated and may differ in future versions.`
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Variable end`.
  Hint: To silence the warning, qualify `Variable` as `IRTools.Variable` in the method signature or explicitly `import IRTools: Variable`.
  93780.8 ms  ✓ Zygote
  6 dependencies successfully precompiled in 118 seconds. 61 already precompiled.
  1 dependency had output during precompilation:
┌ Zygote
│  [Output was shown above]
└  
Precompiling packages...
   1341.1 ms  ✓ Accessors → StructArraysExt
  1 dependency successfully precompiled in 1 seconds. 19 already precompiled.
Precompiling packages...
   1419.1 ms  ✓ BangBang → BangBangStructArraysExt
  1 dependency successfully precompiled in 2 seconds. 23 already precompiled.
Precompiling packages...
   2148.0 ms  ✓ StructArrays → StructArraysStaticArraysExt
  1 dependency successfully precompiled in 2 seconds. 18 already precompiled.
Precompiling packages...
   3816.1 ms  ✓ NNlib → NNlibSpecialFunctionsExt
  1 dependency successfully precompiled in 4 seconds. 43 already precompiled.
Precompiling packages...
   4922.7 ms  ✓ ForwardDiff → ForwardDiffStaticArraysExt
   4149.0 ms  ✓ NNlib → NNlibForwardDiffExt
  2 dependencies successfully precompiled in 9 seconds. 49 already precompiled.
Precompiling packages...
   6987.3 ms  ✓ MLDataDevices → MLDataDevicesMLUtilsExt
  1 dependency successfully precompiled in 8 seconds. 103 already precompiled.
Precompiling packages...
   1301.7 ms  ✓ MLDataDevices → MLDataDevicesFillArraysExt
   2326.2 ms  ✓ MLDataDevices → MLDataDevicesChainRulesExt
   7245.6 ms  ✓ MLDataDevices → MLDataDevicesZygoteExt
  3 dependencies successfully precompiled in 11 seconds. 71 already precompiled.
Precompiling packages...
   1619.7 ms  ✓ Chemfiles_jll
  35869.3 ms  ✓ PrettyTables
  10391.2 ms  ✓ AtomsBase
   3152.0 ms  ✓ WeakRefStrings
  12342.6 ms  ✓ ImageShow
   7257.9 ms  ✓ Pickle
  58133.4 ms  ✓ JLD2
  15382.3 ms  ✓ Graphs
   4783.3 ms  ✓ NearestNeighbors
  18427.8 ms  ✓ HDF5
   8658.7 ms  ✓ DataDeps
   8461.0 ms  ✓ FileIO → HTTPExt
  95845.2 ms  ✓ DataFrames
  10862.7 ms  ✓ Chemfiles
  34758.6 ms  ✓ CSV
   9092.7 ms  ✓ MAT
   9191.7 ms  ✓ BangBang → BangBangDataFramesExt
   8085.8 ms  ✓ Transducers → TransducersDataFramesExt
  75516.5 ms  ✓ MLDatasets
  15561.4 ms  ✓ GNNGraphs
  20 dependencies successfully precompiled in 445 seconds. 202 already precompiled.
Precompiling packages...
  12031.1 ms  ✓ Zygote → ZygoteDistancesExt
  1 dependency successfully precompiled in 12 seconds. 71 already precompiled.
Precompiling packages...
  12119.1 ms  ✓ SimpleWeightedGraphs
  1 dependency successfully precompiled in 13 seconds. 32 already precompiled.
Precompiling packages...
   6794.7 ms  ✓ NPZ
   9641.8 ms  ✓ MAT
   6629.1 ms  ✓ GNNGraphs → GNNGraphsSimpleWeightedGraphsExt
  3 dependencies successfully precompiled in 25 seconds. 221 already precompiled.
Unbound or partitioned GlobalRef not allowed in value position
Internal error: during type inference of
_pullback(Zygote.Context{false}, var"##364".var"#2#3", Array{Float64, 2})
Encountered unexpected error in runtime:
ErrorException("IR verification failed.\n    Code location: /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/test/datastore.jl:80\n  Method instance: MethodInstance for ZygoteRules._pullback(::Zygote.Context{false}, ::Main.var\"##364\".var\"#2#3\", ::Matrix{Float64})")
error at ./error.jl:54
unknown function (ip: 0x7551b4fb71ea) at (unknown file)
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
jl_apply at /source/src/julia.h:2347 [inlined]
jl_f_invokelatest at /source/src/builtins.c:853
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
jl_apply at /source/src/julia.h:2347 [inlined]
jl_f__apply_iterate at /source/src/builtins.c:841
raise_error at ./../usr/share/julia/Compiler/src/ssair/verify.jl:125
jfptr_raise_error_89262.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
check_op at ./../usr/share/julia/Compiler/src/ssair/verify.jl:71
verify_ir at ./../usr/share/julia/Compiler/src/ssair/verify.jl:429
run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1043
run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1027 [inlined]
optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1002
jfptr_optimize_118515.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:202
jfptr_finish_nocycle_120092.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4360
typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1219
typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1311 [inlined]
typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1319
jfptr_typeinf_ext_toplevel_120002.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
jl_apply at /source/src/julia.h:2347 [inlined]
jl_type_infer at /source/src/gf.c:453
jl_compile_method_internal at /source/src/gf.c:2959
_jl_invoke at /source/src/gf.c:3454 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
pullback at /home/pkgeval/.julia/packages/Zygote/aLHDR/src/compiler/interface.jl:96
pullback at /home/pkgeval/.julia/packages/Zygote/aLHDR/src/compiler/interface.jl:94 [inlined]
gradient at /home/pkgeval/.julia/packages/Zygote/aLHDR/src/compiler/interface.jl:153
unknown function (ip: 0x7551b4fb0c36) at (unknown file)
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
jl_apply at /source/src/julia.h:2347 [inlined]
do_call at /source/src/interpreter.c:124
eval_value at /source/src/interpreter.c:242
eval_stmt_value at /source/src/interpreter.c:193 [inlined]
eval_body at /source/src/interpreter.c:692
jl_interpret_toplevel_thunk at /source/src/interpreter.c:897
top-level scope at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/test/datastore.jl:80
jl_toplevel_eval_flex at /source/src/toplevel.c:1032
jl_toplevel_eval_flex at /source/src/toplevel.c:972
ijl_toplevel_eval at /source/src/toplevel.c:1044
ijl_toplevel_eval_in at /source/src/toplevel.c:1089
eval at ./boot.jl:489
include_string at ./loading.jl:2861
include_string at ./loading.jl:2871
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
jl_apply at /source/src/julia.h:2347 [inlined]
jl_f_invokelatest at /source/src/builtins.c:853
#run_testitem##6 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:118 [inlined]
withpath at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/vendored_code.jl:7
#run_testitem##4 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:117 [inlined]
cd at ./file.jl:112
unknown function (ip: 0x75519e9241a6) at (unknown file)
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
run_testitem at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:116
unknown function (ip: 0x75519e92365e) at (unknown file)
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
#run_tests#7 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:221
run_tests at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:133
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
jl_apply at /source/src/julia.h:2347 [inlined]
do_call at /source/src/interpreter.c:124
eval_value at /source/src/interpreter.c:242
eval_stmt_value at /source/src/interpreter.c:193 [inlined]
eval_body at /source/src/interpreter.c:692
jl_interpret_toplevel_thunk at /source/src/interpreter.c:897
top-level scope at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/test/runtests.jl:24
jl_toplevel_eval_flex at /source/src/toplevel.c:1032
jl_toplevel_eval_flex at /source/src/toplevel.c:972
ijl_toplevel_eval at /source/src/toplevel.c:1044
ijl_toplevel_eval_in at /source/src/toplevel.c:1089
eval at ./boot.jl:489
include_string at ./loading.jl:2861
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
_include at ./loading.jl:2921
include at ./Base.jl:304
IncludeInto at ./Base.jl:305
jfptr_IncludeInto_109675.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
jl_apply at /source/src/julia.h:2347 [inlined]
do_call at /source/src/interpreter.c:124
eval_value at /source/src/interpreter.c:242
eval_stmt_value at /source/src/interpreter.c:193 [inlined]
eval_body at /source/src/interpreter.c:692
jl_interpret_toplevel_thunk at /source/src/interpreter.c:897
top-level scope at none:6
jl_toplevel_eval_flex at /source/src/toplevel.c:1032
jl_toplevel_eval_flex at /source/src/toplevel.c:972
ijl_toplevel_eval at /source/src/toplevel.c:1044
ijl_toplevel_eval_in at /source/src/toplevel.c:1089
eval at ./boot.jl:489
exec_options at ./client.jl:294
_start at ./client.jl:560
jfptr__start_58283.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
jl_apply at /source/src/julia.h:2347 [inlined]
true_main at /source/src/jlapi.c:951
jl_repl_entrypoint at /source/src/jlapi.c:1111
main at /source/cli/loader_exe.c:58
unknown function (ip: 0x7551be6ea249) at /lib/x86_64-linux-gnu/libc.so.6
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S

[353] signal 6 (-6): Aborted
in expression starting at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/test/datastore.jl:80
unknown function (ip: 0x7551be74debc) at /lib/x86_64-linux-gnu/libc.so.6
gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
jl_type_infer at /source/src/gf.c:472
jl_compile_method_internal at /source/src/gf.c:2959
_jl_invoke at /source/src/gf.c:3454 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
pullback at /home/pkgeval/.julia/packages/Zygote/aLHDR/src/compiler/interface.jl:96
pullback at /home/pkgeval/.julia/packages/Zygote/aLHDR/src/compiler/interface.jl:94 [inlined]
gradient at /home/pkgeval/.julia/packages/Zygote/aLHDR/src/compiler/interface.jl:153
unknown function (ip: 0x7551b4fb0c36) at (unknown file)
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
jl_apply at /source/src/julia.h:2347 [inlined]
do_call at /source/src/interpreter.c:124
eval_value at /source/src/interpreter.c:242
eval_stmt_value at /source/src/interpreter.c:193 [inlined]
eval_body at /source/src/interpreter.c:692
jl_interpret_toplevel_thunk at /source/src/interpreter.c:897
jl_toplevel_eval_flex at /source/src/toplevel.c:1032
jl_toplevel_eval_flex at /source/src/toplevel.c:972
ijl_toplevel_eval at /source/src/toplevel.c:1044
ijl_toplevel_eval_in at /source/src/toplevel.c:1089
eval at ./boot.jl:489
include_string at ./loading.jl:2861
include_string at ./loading.jl:2871
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
jl_apply at /source/src/julia.h:2347 [inlined]
jl_f_invokelatest at /source/src/builtins.c:853
#run_testitem##6 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:118 [inlined]
withpath at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/vendored_code.jl:7
#run_testitem##4 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:117 [inlined]
cd at ./file.jl:112
unknown function (ip: 0x75519e9241a6) at (unknown file)
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
run_testitem at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:116
unknown function (ip: 0x75519e92365e) at (unknown file)
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
#run_tests#7 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:221
run_tests at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:133
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
jl_apply at /source/src/julia.h:2347 [inlined]
do_call at /source/src/interpreter.c:124
eval_value at /source/src/interpreter.c:242
eval_stmt_value at /source/src/interpreter.c:193 [inlined]
eval_body at /source/src/interpreter.c:692
jl_interpret_toplevel_thunk at /source/src/interpreter.c:897
jl_toplevel_eval_flex at /source/src/toplevel.c:1032
jl_toplevel_eval_flex at /source/src/toplevel.c:972
ijl_toplevel_eval at /source/src/toplevel.c:1044
ijl_toplevel_eval_in at /source/src/toplevel.c:1089
eval at ./boot.jl:489
include_string at ./loading.jl:2861
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
_include at ./loading.jl:2921
include at ./Base.jl:304
IncludeInto at ./Base.jl:305
jfptr_IncludeInto_109675.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
jl_apply at /source/src/julia.h:2347 [inlined]
do_call at /source/src/interpreter.c:124
eval_value at /source/src/interpreter.c:242
eval_stmt_value at /source/src/interpreter.c:193 [inlined]
eval_body at /source/src/interpreter.c:692
jl_interpret_toplevel_thunk at /source/src/interpreter.c:897
jl_toplevel_eval_flex at /source/src/toplevel.c:1032
jl_toplevel_eval_flex at /source/src/toplevel.c:972
ijl_toplevel_eval at /source/src/toplevel.c:1044
ijl_toplevel_eval_in at /source/src/toplevel.c:1089
eval at ./boot.jl:489
exec_options at ./client.jl:294
_start at ./client.jl:560
jfptr__start_58283.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:3462 [inlined]
ijl_apply_generic at /source/src/gf.c:3662
jl_apply at /source/src/julia.h:2347 [inlined]
true_main at /source/src/jlapi.c:951
jl_repl_entrypoint at /source/src/jlapi.c:1111
main at /source/cli/loader_exe.c:58
unknown function (ip: 0x7551be6ea249) at /lib/x86_64-linux-gnu/libc.so.6
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S
Allocations: 432939808 (Pool: 432935675; Big: 4133); GC: 155

Testing failed after 1532.14s

ERROR: LoadError: Package GNNGraphs errored during testing (received signal: 6)
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486
  [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164
  [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152
  [7] test
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined]
  [8] #test#81
    @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined]
  [9] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [10] include(mod::Module, _path::String)
    @ Base ./Base.jl:303
 [11] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:328
 [12] _start()
    @ Base ./client.jl:560
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval crashed after 2081.57s: an internal error was encountered