Package evaluation of DynamicHMC on Julia 1.12.0-DEV.2153 (83dcbd426d*) started at 2025-03-31T11:53:23.820 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.57s ################################################################################ # Installation # Installing DynamicHMC... Resolving package versions... Installed GPUArraysCore ────────── v0.1.6 Installed IrrationalConstants ──── v0.2.4 Installed StridedViews ─────────── v0.4.0 Installed Requires ─────────────── v1.3.1 Installed PackageExtensionCompat ─ v1.0.2 Installed MacroTools ───────────── v0.5.15 Installed LogExpFunctions ──────── v0.3.29 Installed Strided ──────────────── v2.3.0 Installed TransmuteDims ────────── v0.1.16 Installed Adapt ────────────────── v4.3.0 Installed LazyStack ────────────── v0.1.3 Installed ArgCheck ─────────────── v2.5.0 Installed Compat ───────────────── v4.16.0 Installed LogDensityProblems ───── v2.1.2 Installed TensorCast ───────────── v0.4.8 Installed ProgressMeter ────────── v1.10.2 Installed ChainRulesCore ───────── v1.25.1 Installed TupleTools ───────────── v1.6.0 Installed FillArrays ───────────── v1.13.0 Installed Preferences ──────────── v1.4.3 Installed Statistics ───────────── v1.11.1 Installed DynamicHMC ───────────── v3.5.0 Installed StaticArraysCore ─────── v1.4.3 Installed StaticArrays ─────────── v1.9.13 Installed DocStringExtensions ──── v0.9.4 Installed PrecompileTools ──────── v1.3.0 Updating `~/.julia/environments/v1.12/Project.toml` [bbc10e6e] + DynamicHMC v3.5.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [dce04be8] + ArgCheck v2.5.0 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [ffbed154] + DocStringExtensions v0.9.4 [bbc10e6e] + DynamicHMC v3.5.0 [1a297f60] + FillArrays v1.13.0 ⌅ [46192b85] + GPUArraysCore v0.1.6 [92d709cd] + IrrationalConstants v0.2.4 [1fad7336] + LazyStack v0.1.3 [6fdf6af0] + LogDensityProblems v2.1.2 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.15 [65ce6f38] + PackageExtensionCompat v1.0.2 [aea7be01] + PrecompileTools v1.3.0 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.2 [ae029012] + Requires v1.3.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [5e0ebb24] + Strided v2.3.0 [4db3bf67] + StridedViews v0.4.0 [02d47bb6] + TensorCast v0.4.8 [24ddb15e] + TransmuteDims v0.1.16 [9d95972d] + TupleTools v1.6.0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.34s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6868.2 ms ✓ TestEnv 1 dependency successfully precompiled in 9 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 385.48s ################################################################################ # Testing # Testing DynamicHMC Status `/tmp/jl_MCw8VO/Project.toml` [4c88cf16] Aqua v0.8.11 [dce04be8] ArgCheck v2.5.0 [ffbed154] DocStringExtensions v0.9.4 [bbc10e6e] DynamicHMC v3.5.0 [f6369f11] ForwardDiff v1.0.0 [09f84164] HypothesisTests v0.11.3 [c3a54625] JET v0.10.0 [6fdf6af0] LogDensityProblems v2.1.2 [feb245ec] LogDensityTestSuite v0.6.5 [2ab3a3ac] LogExpFunctions v0.3.29 [be115224] MCMCDiagnosticTools v0.3.14 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [84d833dd] TransformVariables v0.8.15 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_MCw8VO/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.11 [dce04be8] ArgCheck v2.5.0 [d360d2e6] ChainRulesCore v1.25.1 [da1fd8a2] CodeTracking v1.3.6 [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.4 [bbc10e6e] DynamicHMC v3.5.0 [1a297f60] FillArrays v1.13.0 [f6369f11] ForwardDiff v1.0.0 ⌅ [46192b85] GPUArraysCore v0.1.6 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.3 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [c3a54625] JET v0.10.0 [692b3bcd] JLLWrappers v1.7.0 [aa1ae85d] JuliaInterpreter v0.9.42 ⌅ [70703baa] JuliaSyntax v0.4.10 [1fad7336] LazyStack v0.1.3 [6fdf6af0] LogDensityProblems v2.1.2 [feb245ec] LogDensityTestSuite v0.6.5 [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.1.0 [be115224] MCMCDiagnosticTools v0.3.14 [e80e1ace] MLJModelInterface v1.11.0 [1914dd2f] MacroTools v0.5.15 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.2 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.33 [65ce6f38] PackageExtensionCompat v1.0.2 [aea7be01] PrecompileTools v1.3.0 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 ⌃ [f2b01f46] Roots v2.0.9 [30f210dd] ScientificTypesBase v3.0.0 [efcf1570] Setfield v1.1.2 [ed01d8cd] Sobol v1.5.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [64bff920] StatisticalTraits v3.4.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [5e0ebb24] Strided v2.3.0 [4db3bf67] StridedViews v0.4.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [02d47bb6] TensorCast v0.4.8 [84d833dd] TransformVariables v0.8.15 [24ddb15e] TransmuteDims v0.1.16 [9d95972d] TupleTools v1.6.0 [3a884ed6] UnPack v1.0.2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time simulated meancov | 2 2 9.4s Test Summary: | Pass Total Time directions | 2 2 0.2s Test Summary: | Pass Total Time dummy adjacent tree full | 17 17 1.8s Test Summary: | Pass Total Time dummy adjacent tree turning | 15 15 0.7s Test Summary: | Pass Total Time dummy adjacent tree divergent | 13 13 0.9s Test Summary: | Pass Total Time dummy adjacent tree full backward | 29 29 0.3s Test Summary: | Pass Total Time dummy sampled tree | 27 27 0.3s Test Summary: | Pass Total Time transition calculations consistency check | 190527 190527 0.9s Test Summary: | Pass Total Time detailed balance | 1813168 1813168 3.6s Test Summary: | Pass Total Time Gaussian KE full | 400 400 35.4s Test Summary: | Pass Total Time Gaussian KE diagonal | 400 400 17.7s Test Summary: | Pass Total Time phasepoint internal consistency | 23 23 5.0s Test Summary: | Pass Total Time leapfrog calculation | 205 205 2.0s Test Summary: | Pass Total Time leapfrog Hamiltonian invariance | 1000 1000 0.5s Test Summary: | Pass Total Time leapfrog back and forth | 2200 2200 1.2s Test Summary: | Pass Total Time PhasePoint building blocks and infinite values | 9 9 1.3s Test Summary: | Pass Total Time Hamiltonian and KE printing | 3 3 0.7s Test Summary: | Pass Total Time unit normal simple HMC | 2 2 1.5s Test Summary: | Pass Total Time random booleans | 12 12 0.2s Test Summary: | Pass Total Time low-level turn statistics | 3 3 0.9s Test Summary: | Pass Total Time low-level visited statistics | 3 3 0.3s Test Summary: | Pass Total Time unconditional divergence | 4 4 1.3s Test Summary: | Pass Total Time normal NUTS HMC transition mean and cov | 20 20 3.9s Test Summary: | Pass Total Time stepsize general rootfinding | 7 7 0.3s Test Summary: | Pass Total Time dual averaging far | 4 4 0.4s Test Summary: | Pass Total Time dual averaging close | 1 1 0.0s Test Summary: | Pass Total Time dual averaging far and noisy | 1 1 0.0s Test Summary: | Pass Total Time fixed stepsize sanity checks | 3 3 0.0s Test Summary: | Pass Total Time find reasonable stepsize - random H, z | 100 100 0.0s Test Summary: | Pass Total Time error for non-finite initial density | 1 1 0.0s Test Summary: | Pass Total Time printing | 2 2 0.8s Test Summary: | Pass Total Time mcmc | 11 11 11.7s Test Summary: | Pass Total Time robust U-turn tests | 1 1 15.4s Test Summary: | Pass Total Time posterior accessors sanity checks | 2 2 1.6s Test Summary: | Pass Total Time summarize tree statistics | 15 15 5.1s Test Summary: | Pass Total Time log acceptance ratios | 2 2 1.1s Test Summary: | Pass Total Time leapfrog trajectory | 3 3 2.9s INFO while testing: multivariate normal μ = [0.8301927814822285, 1.273478887777463, -1.570807537359539, -1.3615665366382814, -0.9947164737086956, 0.7987890396955843, 0.272674538172576, 0.7530391734179639, 1.8665022794407784, 0.19160380845878502] D = Diagonal([2.68937751223607, 0.9574858765412964, 0.39545974745657175, 0.41937169127291635, 0.6217237076484357, 0.03688929417361983, 0.22595946306784592, 0.004738640434084621, 1.7302940676732792, 2.326370594137585]) C = [1.0 0.6611653309696089 -0.5939263489731413 0.42891181979322374 0.6765685285698442 -0.9249978925507527 -0.5498323810657662 -0.1706742323686643 0.18366574113512868 -0.6055919883518168; 0.0 0.7502402316084146 -0.23451167872862608 0.21397837164585207 -0.4491023518353941 0.31579782373203297 0.7542042860572128 0.6514120682172747 -0.47972073352788197 -0.2823723769001375; 0.0 0.0 0.7695815515819723 0.45177007624248816 -0.0623294917912044 -0.1006430195539979 -0.07858161103833432 -0.11174810324015474 -0.09464205861058116 -0.7116737827301457; 0.0 0.0 0.0 0.7524305320235953 0.07505142209367027 0.15801028806145878 0.12015742305118815 -0.7010578083842199 0.3776979287559408 0.024434958561083953; 0.0 0.0 0.0 0.0 0.5753645993798382 -0.06802019126034084 -0.31856045592342486 -0.1763415509218046 0.4177975719171049 0.15580553801725877; 0.0 0.0 0.0 0.0 0.0 0.0701969968408406 -0.06731300956777791 -0.09019150545137856 -0.543017283821246 0.09064518466921838; 0.0 0.0 0.0 0.0 0.0 0.0 0.04728177642163632 -0.03146508684326393 -0.15425863866757453 0.08418068359994904; 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.04839455118971922 0.19889984477652012 0.06901259937986715; 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.22747002270200126 -0.019644643772129506; 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.041480002513550725], dimension 10 ALERT some τ = [0.157, 0.279, 0.327, 0.365, 0.216, 0.345, 0.257, 0.376, 0.31, 0.249] < 0.2 ALERT extreme Anderson-Darling p ≈ 9.98e-9 < 0.0 for coordinate 1 of 10 NUTS tests with random normal: Test Failed at /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/test/sample-correctness_utilities.jl:117 Expression: p_AD ≥ pd_fail Evaluated: 9.978429293374227e-9 ≥ 1.0e-5 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:679 [inlined] [2] NUTS_tests(rng::TaskLocalRNG, ℓ::LogDensityTestSuite.Shift{LogDensityTestSuite.Linear{StandardMultivariateNormal, UpperTriangular{Float64, Matrix{Float64}}, UpperTriangular{Float64, Matrix{Float64}}, Float64}, Vector{Float64}}, title::String, N::Int64; K::Int64, io::Base.PipeEndpoint, mcmc_args::@NamedTuple{}, R̂_alert::Float64, R̂_fail::Float64, τ_alert::Float64, τ_fail::Float64, p_alert::Float64, p_fail::Float64, EBFMI_alert::Float64, EBFMI_fail::Float64) @ Main ~/.julia/packages/DynamicHMC/wYkyM/test/sample-correctness_utilities.jl:117 [3] NUTS_tests(rng::TaskLocalRNG, ℓ::LogDensityTestSuite.Shift{LogDensityTestSuite.Linear{StandardMultivariateNormal, UpperTriangular{Float64, Matrix{Float64}}, UpperTriangular{Float64, Matrix{Float64}}, Float64}, Vector{Float64}}, title::String, N::Int64) @ Main ~/.julia/packages/DynamicHMC/wYkyM/test/sample-correctness_utilities.jl:55 [4] macro expansion @ ~/.julia/packages/DynamicHMC/wYkyM/test/sample-correctness_tests.jl:17 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined] [6] top-level scope @ ~/.julia/packages/DynamicHMC/wYkyM/test/sample-correctness_tests.jl:10 ALERT extreme Anderson-Darling p ≈ 8.11e-6 < 0.0 for coordinate 5 of 10 NUTS tests with random normal: Test Failed at /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/test/sample-correctness_utilities.jl:117 Expression: p_AD ≥ pd_fail Evaluated: 8.10652035159296e-6 ≥ 1.0e-5 Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:679 [inlined] [2] NUTS_tests(rng::TaskLocalRNG, ℓ::LogDensityTestSuite.Shift{LogDensityTestSuite.Linear{StandardMultivariateNormal, UpperTriangular{Float64, Matrix{Float64}}, UpperTriangular{Float64, Matrix{Float64}}, Float64}, Vector{Float64}}, title::String, N::Int64; K::Int64, io::Base.PipeEndpoint, mcmc_args::@NamedTuple{}, R̂_alert::Float64, R̂_fail::Float64, τ_alert::Float64, τ_fail::Float64, p_alert::Float64, p_fail::Float64, EBFMI_alert::Float64, EBFMI_fail::Float64) @ Main ~/.julia/packages/DynamicHMC/wYkyM/test/sample-correctness_utilities.jl:117 [3] NUTS_tests(rng::TaskLocalRNG, ℓ::LogDensityTestSuite.Shift{LogDensityTestSuite.Linear{StandardMultivariateNormal, UpperTriangular{Float64, Matrix{Float64}}, UpperTriangular{Float64, Matrix{Float64}}, Float64}, Vector{Float64}}, title::String, N::Int64) @ Main ~/.julia/packages/DynamicHMC/wYkyM/test/sample-correctness_utilities.jl:55 [4] macro expansion @ ~/.julia/packages/DynamicHMC/wYkyM/test/sample-correctness_tests.jl:17 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined] [6] top-level scope @ ~/.julia/packages/DynamicHMC/wYkyM/test/sample-correctness_tests.jl:10 Test Summary: | Pass Fail Total Time NUTS tests with random normal | 97 2 99 1m36.6s RNG of the outermost testset: Xoshiro(0x0116b3f8d2e5df7b, 0x92d3466e0bc88d2c, 0xa2ffe9b541f860e7, 0x8cbba70ee6d6918d, 0xc1b1a9358ff7665d) ERROR: LoadError: Some tests did not pass: 97 passed, 2 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/test/sample-correctness_tests.jl:9 in expression starting at /home/pkgeval/.julia/packages/DynamicHMC/wYkyM/test/runtests.jl:40 Testing failed after 281.42s ERROR: LoadError: Package DynamicHMC errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 709.34s: package has test failures