Package evaluation of DeconvOptim on Julia 1.12.0-DEV.2153 (83dcbd426d*) started at 2025-03-31T12:29:34.904 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.6s ################################################################################ # Installation # Installing DeconvOptim... Resolving package versions... Installed GPUArraysCore ─────────────── v0.2.0 Installed RealDot ───────────────────── v0.1.0 Installed Adapt ─────────────────────── v4.3.0 Installed IrrationalConstants ───────── v0.2.4 Installed DiffRules ─────────────────── v1.15.1 Installed ColorTypes ────────────────── v0.12.0 Installed IRTools ───────────────────── v0.4.14 Installed oneTBB_jll ────────────────── v2022.0.0+0 Installed OffsetArrays ──────────────── v1.16.0 Installed PtrArrays ─────────────────── v1.3.0 Installed ImageCore ─────────────────── v0.10.5 Installed TensorCore ────────────────── v0.1.1 Installed Preferences ───────────────── v1.4.3 Installed FFTW ──────────────────────── v1.8.1 Installed TableTraits ───────────────── v1.0.1 Installed Noise ─────────────────────── v0.3.3 Installed PositiveFactorizations ────── v0.2.4 Installed DiffResults ───────────────── v1.1.0 Installed ADTypes ───────────────────── v1.14.0 Installed Tullio ────────────────────── v0.3.8 Installed Tables ────────────────────── v1.12.0 Installed SpecialFunctions ──────────── v2.5.0 Installed DataAPI ───────────────────── v1.16.0 Installed HashArrayMappedTries ──────── v0.2.0 Installed Setfield ──────────────────── v1.1.2 Installed MKL_jll ───────────────────── v2025.0.1+1 Installed FixedPointNumbers ─────────── v0.8.5 Installed JLLWrappers ───────────────── v1.7.0 Installed AbstractFFTs ──────────────── v1.5.0 Installed StaticArraysCore ──────────── v1.4.3 Installed StaticArrays ──────────────── v1.9.13 Installed Zygote ────────────────────── v0.6.75 Installed NaNMath ───────────────────── v1.1.2 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Optim ─────────────────────── v1.11.0 Installed ConstructionBase ──────────── v1.5.8 Installed DataValueInterfaces ───────── v1.0.0 Installed ColorVectorSpace ──────────── v0.11.0 Installed StructArrays ──────────────── v0.7.0 Installed OrderedCollections ────────── v1.8.0 Installed LLVMExtra_jll ─────────────── v0.0.35+0 Installed PrecompileTools ───────────── v1.3.0 Installed PoissonRandom ─────────────── v0.4.4 Installed ScopedValues ──────────────── v1.3.0 Installed CEnum ─────────────────────── v0.5.0 Installed NLSolversBase ─────────────── v7.9.0 Installed FillArrays ────────────────── v1.13.0 Installed ArrayInterface ────────────── v7.18.0 Installed ForwardDiff ───────────────── v0.10.38 Installed LineSearches ──────────────── v7.3.0 Installed ChainRulesCore ────────────── v1.25.1 Installed GPUArrays ─────────────────── v11.2.2 Installed Interpolations ────────────── v0.15.1 Installed Ratios ────────────────────── v0.4.5 Installed Reexport ──────────────────── v1.2.2 Installed AxisAlgorithms ────────────── v1.1.0 Installed Statistics ────────────────── v1.11.1 Installed IntelOpenMP_jll ───────────── v2025.0.4+0 Installed Requires ──────────────────── v1.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed CommonSubexpressions ──────── v0.3.1 Installed Colors ────────────────────── v0.13.0 Installed DataStructures ────────────── v0.18.22 Installed ChainRules ────────────────── v1.72.3 Installed MappedArrays ──────────────── v0.4.2 Installed PaddedViews ───────────────── v0.5.12 Installed KernelAbstractions ────────── v0.9.34 Installed AliasTables ───────────────── v1.1.3 Installed FFTW_jll ──────────────────── v3.3.10+3 Installed ZygoteRules ───────────────── v0.2.7 Installed StackViews ────────────────── v0.1.1 Installed StatsAPI ──────────────────── v1.7.0 Installed DeconvOptim ───────────────── v0.7.3 Installed MacroTools ────────────────── v0.5.15 Installed UnPack ────────────────────── v1.0.2 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Compat ────────────────────── v4.16.0 Installed SparseInverseSubset ───────── v0.1.2 Installed UnsafeAtomics ─────────────── v0.3.0 Installed Parameters ────────────────── v0.12.3 Installed WoodburyMatrices ──────────── v1.0.0 Installed Missings ──────────────────── v1.2.0 Installed MosaicViews ───────────────── v0.3.4 Installed Atomix ────────────────────── v1.1.1 Installed SortingAlgorithms ─────────── v1.2.1 Installed StatsBase ─────────────────── v0.34.4 Installed DocStringExtensions ───────── v0.9.4 Installed FiniteDiff ────────────────── v2.27.0 Installed DifferentiationInterface ──── v0.6.49 Installed LLVM ──────────────────────── v9.2.0 Installing 4 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact oneTBB 435.6 KiB Installed artifact FFTW 2.2 MiB Installed artifact LLVMExtra 2.8 MiB Updating `~/.julia/environments/v1.12/Project.toml` [03e7cd2f] + DeconvOptim v0.7.3 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [621f4979] + AbstractFFTs v1.5.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.18.0 [a9b6321e] + Atomix v1.1.1 [13072b0f] + AxisAlgorithms v1.1.0 [fa961155] + CEnum v0.5.0 [082447d4] + ChainRules v1.72.3 [d360d2e6] + ChainRulesCore v1.25.1 [3da002f7] + ColorTypes v0.12.0 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [03e7cd2f] + DeconvOptim v0.7.3 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.6.49 [ffbed154] + DocStringExtensions v0.9.4 [7a1cc6ca] + FFTW v1.8.1 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [f6369f11] + ForwardDiff v0.10.38 [0c68f7d7] + GPUArrays v11.2.2 [46192b85] + GPUArraysCore v0.2.0 [076d061b] + HashArrayMappedTries v0.2.0 [7869d1d1] + IRTools v0.4.14 [a09fc81d] + ImageCore v0.10.5 [a98d9a8b] + Interpolations v0.15.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [63c18a36] + KernelAbstractions v0.9.34 [929cbde3] + LLVM v9.2.0 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + 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v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [09ab397b] + StructArrays v0.7.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [62fd8b95] + TensorCore v0.1.1 [bc48ee85] + Tullio v0.3.8 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [efce3f68] + WoodburyMatrices v1.0.0 ⌅ [e88e6eb3] + Zygote v0.6.75 [700de1a5] + ZygoteRules v0.2.7 [f5851436] + FFTW_jll v3.3.10+3 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [dad2f222] + LLVMExtra_jll v0.0.35+0 [856f044c] + MKL_jll v2025.0.1+1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 13.03s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 7018.4 ms ✓ TestEnv 1 dependency successfully precompiled in 9 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 1097.3s ################################################################################ # Testing # Testing DeconvOptim Status `/tmp/jl_qlwn8A/Project.toml` [d360d2e6] ChainRulesCore v1.25.1 [03e7cd2f] DeconvOptim v0.7.3 [7a1cc6ca] FFTW v1.8.1 [1a297f60] FillArrays v1.13.0 [6218d12a] ImageMagick v1.4.1 [a98d9a8b] Interpolations v0.15.1 [d3d80556] LineSearches v7.3.0 [81d43f40] Noise v0.3.3 [429524aa] Optim v1.11.0 [aea7be01] PrecompileTools v1.3.0 [ae029012] Requires v1.3.1 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.4 [5e47fb64] TestImages v1.9.0 [bc48ee85] Tullio v0.3.8 ⌅ [e88e6eb3] Zygote v0.6.75 [37e2e46d] LinearAlgebra v1.12.0 [44cfe95a] Pkg v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_qlwn8A/Manifest.toml` [47edcb42] ADTypes v1.14.0 [621f4979] AbstractFFTs v1.5.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.18.0 [a9b6321e] Atomix v1.1.1 [13072b0f] AxisAlgorithms v1.1.0 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Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Generate downsample: Error During Test at /home/pkgeval/.julia/packages/DeconvOptim/nPHi2/test/utils.jl:58 Got exception outside of a @test UndefVarError: `f` not defined in `DeconvOptim` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] generate_downsample(num_dim::Int64, downsample_dims::Vector{Int64}, factor::Int64) @ DeconvOptim ~/.julia/packages/DeconvOptim/nPHi2/src/utils.jl:73 [2] top-level scope @ ~/.julia/packages/DeconvOptim/nPHi2/test/utils.jl:59 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined] [4] macro expansion @ ~/.julia/packages/DeconvOptim/nPHi2/test/utils.jl:59 [inlined] [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [6] top-level scope @ ~/.julia/packages/DeconvOptim/nPHi2/test/runtests.jl:15 [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined] [8] macro expansion @ ~/.julia/packages/DeconvOptim/nPHi2/test/runtests.jl:15 [inlined] [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [10] top-level scope @ none:6 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:294 [13] _start() @ Base ./client.jl:560 Test Summary: | Pass Error Total Time Utils | 23 1 24 58.2s center methods | 10 10 7.1s interpolate methods | 4 4 8.6s Generate downsample | 1 1 34.6s Generate PSF method | 3 3 4.4s rr methods | 4 4 2.9s next fast fft size | 2 2 0.3s RNG of the outermost testset: Xoshiro(0xa379de7eeeb2a4e8, 0x953dccb6b532b3af, 0xf597b8ff8cfd652a, 0xccd7337c571680d1, 0xc90c4a0730db3f7e) ERROR: LoadError: Some tests did not pass: 23 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/DeconvOptim/nPHi2/test/runtests.jl:14 Testing failed after 106.33s ERROR: LoadError: Package DeconvOptim errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1263.47s: package tests unexpectedly errored