Package evaluation of BioVossEncoder on Julia 1.12.0-DEV.2153 (83dcbd426d*) started at 2025-03-31T10:31:23.781 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.78s ################################################################################ # Installation # Installing BioVossEncoder... Resolving package versions... Installed Twiddle ───────── v1.1.2 Installed BioSymbols ────── v5.1.3 Installed Preferences ───── v1.4.3 Installed PrecompileTools ─ v1.3.0 Installed BioSequences ──── v3.4.1 Installed BioVossEncoder ── v0.6.0 Updating `~/.julia/environments/v1.12/Project.toml` [e7894126] + BioVossEncoder v0.6.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [7e6ae17a] + BioSequences v3.4.1 [3c28c6f8] + BioSymbols v5.1.3 [e7894126] + BioVossEncoder v0.6.0 [aea7be01] + PrecompileTools v1.3.0 [21216c6a] + Preferences v1.4.3 [7200193e] + Twiddle v1.1.2 [ade2ca70] + Dates v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 Installation completed after 1.62s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 7022.8 ms ✓ TestEnv 1 dependency successfully precompiled in 9 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 189.47s ################################################################################ # Testing # Testing BioVossEncoder Status `/tmp/jl_rdTc6m/Project.toml` [4c88cf16] Aqua v0.8.11 [7e6ae17a] BioSequences v3.4.1 [e7894126] BioVossEncoder v0.6.0 [c3a54625] JET v0.10.0 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_rdTc6m/Manifest.toml` [4c88cf16] Aqua v0.8.11 [7e6ae17a] BioSequences v3.4.1 [3c28c6f8] BioSymbols v5.1.3 [e7894126] BioVossEncoder v0.6.0 [da1fd8a2] CodeTracking v1.3.6 [34da2185] Compat v4.16.0 [c3a54625] JET v0.10.0 [aa1ae85d] JuliaInterpreter v0.9.42 ⌅ [70703baa] JuliaSyntax v0.4.10 [6f1432cf] LoweredCodeUtils v3.1.0 [1914dd2f] MacroTools v0.5.15 [aea7be01] PrecompileTools v1.3.0 [21216c6a] Preferences v1.4.3 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [7200193e] Twiddle v1.1.2 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [458c3c95] OpenSSL_jll v3.0.16+0 [83775a58] Zlib_jll v1.3.1+2 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Code linting: JET-test failed at /home/pkgeval/.julia/packages/JET/RhfVv/src/JETBase.jl:1047 Expression: (JET.report_package)(BioVossEncoder; toplevel_logger = nothing, target_defined_modules = true) ═════ 3 toplevel errors found ═════ ┌ @ /home/pkgeval/.julia/packages/BioVossEncoder/WfcxF/src/BioVossEncoder.jl:33 │ SystemError: opening file "/home/pkgeval/.julia/packages/BioVossEncoder/WfcxF/test/types.jl": No such file or directory └────────────────────── ┌ @ /home/pkgeval/.julia/packages/BioVossEncoder/WfcxF/src/BioVossEncoder.jl:34 │ SystemError: opening file "/home/pkgeval/.julia/packages/BioVossEncoder/WfcxF/test/utils.jl": No such file or directory └────────────────────── ┌ @ /home/pkgeval/.julia/packages/BioVossEncoder/WfcxF/src/BioVossEncoder.jl:35 │ SystemError: opening file "/home/pkgeval/.julia/packages/BioVossEncoder/WfcxF/test/extended.jl": No such file or directory └────────────────────── Test Summary: | Pass Fail Total Time Package | 18 1 19 2m44.8s test/runtests.jl | 18 1 19 2m44.8s VE | 9 9 5.0s Code quality | 9 9 51.0s Code linting | 1 1 1m48.7s ERROR: LoadError: Some tests did not pass: 18 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/BioVossEncoder/WfcxF/test/runtests.jl:1 Testing failed after 215.41s ERROR: LoadError: Package BioVossEncoder errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 434.42s: package has test failures