Package evaluation of AtomicSymmetries on Julia 1.12.0-DEV.2153 (83dcbd426d*) started at 2025-03-31T10:43:48.798 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.28s ################################################################################ # Installation # Installing AtomicSymmetries... Resolving package versions... Installed StructEquality ────── v2.1.0 Installed Compat ────────────── v4.16.0 Installed Bumper ────────────── v0.7.1 Installed StaticArrays ──────── v1.9.13 Installed spglib_jll ────────── v2.1.0+0 Installed Preferences ───────── v1.4.3 Installed UnsafeArrays ──────── v1.0.7 Installed JLLWrappers ───────── v1.7.0 Installed StaticArraysCore ──── v1.4.3 Installed Spglib ────────────── v0.9.5 Installed CrystallographyCore ─ v0.3.3 Installed PrecompileTools ───── v1.3.0 Installed AtomicSymmetries ──── v0.6.0 Installing 1 artifacts Installed artifact spglib 270.2 KiB Updating `~/.julia/environments/v1.12/Project.toml` [7e24f7a5] + AtomicSymmetries v0.6.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [7e24f7a5] + AtomicSymmetries v0.6.0 [8ce10254] + Bumper v0.7.1 [34da2185] + Compat v4.16.0 ⌅ [80545937] + CrystallographyCore v0.3.3 [692b3bcd] + JLLWrappers v1.7.0 [aea7be01] + PrecompileTools v1.3.0 [21216c6a] + Preferences v1.4.3 [f761d5c5] + Spglib v0.9.5 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [6ec83bb0] + StructEquality v2.1.0 [c4a57d5a] + UnsafeArrays v1.0.7 ⌅ [ac4a9f1e] + spglib_jll v2.1.0+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.24s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6887.7 ms ✓ TestEnv 1 dependency successfully precompiled in 9 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 211.87s ################################################################################ # Testing # Testing AtomicSymmetries Status `/tmp/jl_dnzjRi/Project.toml` [7e24f7a5] AtomicSymmetries v0.6.0 [8ce10254] Bumper v0.7.1 [8bb1440f] DelimitedFiles v1.9.1 [438e738f] PyCall v1.96.4 [f761d5c5] Spglib v0.9.5 [37e2e46d] LinearAlgebra v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_dnzjRi/Manifest.toml` [7e24f7a5] AtomicSymmetries v0.6.0 [8ce10254] Bumper v0.7.1 [34da2185] Compat v4.16.0 [8f4d0f93] Conda v1.10.2 ⌅ [80545937] CrystallographyCore v0.3.3 [8bb1440f] DelimitedFiles v1.9.1 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [1914dd2f] MacroTools v0.5.15 [69de0a69] Parsers v2.8.1 [aea7be01] PrecompileTools v1.3.0 [21216c6a] Preferences v1.4.3 [438e738f] PyCall v1.96.4 [f761d5c5] Spglib v0.9.5 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [6ec83bb0] StructEquality v2.1.0 [c4a57d5a] UnsafeArrays v1.0.7 [81def892] VersionParsing v1.3.0 ⌅ [ac4a9f1e] spglib_jll v2.1.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.0.16+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... vector_input = [0.023832622484073696, 0.9002233005641614, 0.07905053757546754, 0.29568300089599864, 0.6875756359680641, 0.5768992403838555] vector_input = [0.0, 0.0, 0.0, 0.0, 0.0, 0.0] BCC: Error During Test at /home/pkgeval/.julia/packages/AtomicSymmetries/cjitg/test/runtests.jl:9 Got exception outside of a @test BoundsError: attempt to access 3×3 LinearIndices{2, Tuple{Base.OneTo{Int64}, Base.OneTo{Int64}}} at index [4, 3] Stacktrace: [1] throw_boundserror(A::LinearIndices{2, Tuple{Base.OneTo{Int64}, Base.OneTo{Int64}}}, I::Tuple{Int64, Int64}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:699 [inlined] [3] _getindex @ ./abstractarray.jl:1370 [inlined] [4] getindex @ ./abstractarray.jl:1342 [inlined] [5] _unsafe_view_impl @ ~/.julia/packages/UnsafeArrays/AeaOp/src/unsafe_array.jl:104 [inlined] [6] unsafe_view @ ~/.julia/packages/UnsafeArrays/AeaOp/src/unsafe_array.jl:72 [inlined] [7] view @ ./subarray.jl:216 [inlined] [8] _isbanded_impl(A::UnsafeArrays.UnsafeArray{Float64, 2}, kl::Int64, ku::Int64) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/generic.jl:1510 [9] _isbanded @ /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/generic.jl:1469 [inlined] [10] isbanded @ /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/generic.jl:1463 [inlined] [11] isdiag @ /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/generic.jl:1566 [inlined] [12] inv(A::UnsafeArrays.UnsafeArray{Float64, 2}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.12/LinearAlgebra/src/dense.jl:1065 [13] macro expansion @ ~/.julia/packages/AtomicSymmetries/cjitg/src/crystal.jl:16 [inlined] [14] macro expansion @ ~/.julia/packages/Bumper/erETf/src/internals.jl:76 [inlined] [15] get_crystal_coords!(crystal::UnsafeArrays.UnsafeArray{Float64, 2}, cartesian::Matrix{Float64}, cell::Matrix{Float64}; buffer::Bumper.SlabBufferImpl.SlabBuffer{1048576}) @ AtomicSymmetries ~/.julia/packages/AtomicSymmetries/cjitg/src/crystal.jl:10 [16] get_crystal_coords! @ ~/.julia/packages/AtomicSymmetries/cjitg/src/crystal.jl:8 [inlined] [17] macro expansion @ ~/.julia/packages/AtomicSymmetries/cjitg/src/symmetries_core.jl:215 [inlined] [18] macro expansion @ ~/.julia/packages/Bumper/erETf/src/internals.jl:76 [inlined] [19] symmetrize_positions!(positions::Matrix{Float64}, cell::Matrix{Float64}, symmetry_group::Symmetries{Float64}; buffer::Bumper.SlabBufferImpl.SlabBuffer{1048576}) @ AtomicSymmetries ~/.julia/packages/AtomicSymmetries/cjitg/src/symmetries_core.jl:213 [20] symmetrize_positions! @ ~/.julia/packages/AtomicSymmetries/cjitg/src/symmetries_core.jl:206 [inlined] [21] test_bcc(; verbose::Bool) @ Main ~/.julia/packages/AtomicSymmetries/cjitg/test/test_bcc.jl:37 [22] test_bcc() @ Main ~/.julia/packages/AtomicSymmetries/cjitg/test/test_bcc.jl:4 [23] top-level scope @ ~/.julia/packages/AtomicSymmetries/cjitg/test/runtests.jl:1766 [24] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1771 [inlined] [25] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [26] top-level scope @ none:6 [27] eval(m::Module, e::Any) @ Core ./boot.jl:489 [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:294 [29] _start() @ Base ./client.jl:560 Test Summary: | Pass Error Total Time BCC | 1 1 2 40.4s RNG of the outermost testset: Random.Xoshiro(0xb1cb846d4d48ee54, 0x6d6322df08ff560c, 0xf38513ae228c9066, 0x015c943b4f78535c, 0xc5165d10415009fa) ERROR: LoadError: Some tests did not pass: 1 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/AtomicSymmetries/cjitg/test/runtests.jl:9 Testing failed after 67.2s ERROR: LoadError: Package AtomicSymmetries errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 352.29s: package tests unexpectedly errored