Package evaluation of ASEconvert on Julia 1.12.0-DEV.2153 (83dcbd426d*) started at 2025-03-31T11:07:02.952 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.06s ################################################################################ # Installation # Installing ASEconvert... Resolving package versions... Installed MicroMamba ────────────────── v0.1.14 Installed TableTraits ───────────────── v1.0.1 Installed Parsers ───────────────────── v2.8.1 Installed JSON3 ─────────────────────── v1.14.2 Installed Scratch ───────────────────── v1.2.1 Installed Preferences ───────────────── v1.4.3 Installed AtomsBase ─────────────────── v0.5.1 Installed DataAPI ───────────────────── v1.16.0 Installed Tables ────────────────────── v1.12.0 Installed Unitful ───────────────────── v1.22.0 Installed PythonCall ────────────────── v0.9.24 Installed Pidfile ───────────────────── v1.3.0 Installed StaticArrays ──────────────── v1.9.13 Installed JLLWrappers ───────────────── v1.7.0 Installed micromamba_jll ────────────── v1.5.8+0 Installed StaticArraysCore ──────────── v1.4.3 Installed AtomsCalculators ──────────── v0.2.3 Installed DataValueInterfaces ───────── v1.0.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed UnitfulAtomic ─────────────── v1.0.0 Installed OrderedCollections ────────── v1.8.0 Installed PrecompileTools ───────────── v1.3.0 Installed UnsafePointers ────────────── v1.0.0 Installed Requires ──────────────────── v1.3.1 Installed MacroTools ────────────────── v0.5.15 Installed Compat ────────────────────── v4.16.0 Installed pixi_jll ──────────────────── v0.41.3+0 Installed CondaPkg ──────────────────── v0.2.26 Installed PeriodicTable ─────────────── v1.2.1 Installed StructTypes ───────────────── v1.11.0 Installed ASEconvert ────────────────── v0.1.8 Updating `~/.julia/environments/v1.12/Project.toml` [3da9722f] + ASEconvert v0.1.8 Updating `~/.julia/environments/v1.12/Manifest.toml` [3da9722f] + ASEconvert v0.1.8 [a963bdd2] + AtomsBase v0.5.1 [a3e0e189] + AtomsCalculators v0.2.3 [34da2185] + Compat v4.16.0 [992eb4ea] + CondaPkg v0.2.26 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [0f8b85d8] + JSON3 v1.14.2 [1914dd2f] + MacroTools v0.5.15 [0b3b1443] + MicroMamba v0.1.14 [bac558e1] + OrderedCollections v1.8.0 [69de0a69] + Parsers v2.8.1 [7b2266bf] + PeriodicTable v1.2.1 [fa939f87] + Pidfile v1.3.0 [aea7be01] + PrecompileTools v1.3.0 [21216c6a] + Preferences v1.4.3 [6099a3de] + PythonCall v0.9.24 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.2.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [1986cc42] + Unitful v1.22.0 [a7773ee8] + UnitfulAtomic v1.0.0 [e17b2a0c] + UnsafePointers v1.0.0 [f8abcde7] + micromamba_jll v1.5.8+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.11.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2024.12.31 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.5.0+2 Installation completed after 2.81s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 6684.5 ms ✓ TestEnv 1 dependency successfully precompiled in 9 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 311.36s ################################################################################ # Testing # Testing ASEconvert Status `/tmp/jl_SRla0w/Project.toml` [3da9722f] ASEconvert v0.1.8 [a963bdd2] AtomsBase v0.5.1 [ed7c10db] AtomsBaseTesting v0.4.0 [a3e0e189] AtomsCalculators v0.2.3 [992eb4ea] CondaPkg v0.2.26 [352459e4] ExtXYZ v0.2.2 [7b2266bf] PeriodicTable v1.2.1 [6099a3de] PythonCall v0.9.24 [1986cc42] Unitful v1.22.0 [a7773ee8] UnitfulAtomic v1.0.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_SRla0w/Manifest.toml` [3da9722f] ASEconvert v0.1.8 [a963bdd2] AtomsBase v0.5.1 [ed7c10db] AtomsBaseTesting v0.4.0 [a3e0e189] AtomsCalculators v0.2.3 [34da2185] Compat v4.16.0 [992eb4ea] CondaPkg v0.2.26 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [352459e4] ExtXYZ v0.2.2 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [0f8b85d8] JSON3 v1.14.2 [1914dd2f] MacroTools v0.5.15 [0b3b1443] MicroMamba v0.1.14 [bac558e1] OrderedCollections v1.8.0 [69de0a69] Parsers v2.8.1 [7b2266bf] PeriodicTable v1.2.1 [fa939f87] Pidfile v1.3.0 [aea7be01] PrecompileTools v1.3.0 [21216c6a] Preferences v1.4.3 [6099a3de] PythonCall v0.9.24 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch v1.2.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [1986cc42] Unitful v1.22.0 [a7773ee8] UnitfulAtomic v1.0.0 [e17b2a0c] UnsafePointers v1.0.0 [6ecdc6fc] extxyz_jll v0.1.3+0 [cdc7adba] libcleri_jll v0.12.1+3 [f8abcde7] micromamba_jll v1.5.8+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.11.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2024.12.31 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.0.16+0 [efcefdf7] PCRE2_jll v10.44.0+1 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.5.0+2 Testing Running tests... ERROR: LoadError: InitError: ConcurrencyViolationError("deadlock detected in loading pixi_jll using pixi_jll (while loading UnitfulAtomic and StaticArraysCore and Test and ASEconvert and AtomsCalculators and LazyArtifacts and CompatLinearAlgebraExt and AtomsBase and JLLWrappers and Compat and PeriodicTable and PythonCall and Unitful and StaticArrays and InteractiveUtils)") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2219 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2227 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2497 [4] _require_prelocked @ ./loading.jl:2496 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2494 [7] require(uuidkey::Base.PkgId) @ Base ./loading.jl:2492 [8] pixi_jll_module() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/CondaPkg.jl:37 [9] backend() @ CondaPkg ~/.julia/packages/CondaPkg/pEObH/src/backend.jl:17 [10] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/context.jl:55 [11] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/WMWY0/src/C/C.jl:23 [12] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1424 [13] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1412 [14] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1300 [15] _include_from_serialized (repeats 2 times) @ ./loading.jl:1246 [inlined] [16] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2111 [17] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2636 [18] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2502 [19] macro expansion @ ./loading.jl:2430 [inlined] [20] macro expansion @ ./lock.jl:376 [inlined] [21] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2395 [22] require(into::Module, mod::Symbol) @ Base ./loading.jl:2371 [23] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:304 [24] top-level scope @ none:6 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:294 [27] _start() @ Base ./client.jl:560 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/ASEconvert/kvmT8/test/runtests.jl:1 Testing failed after 23.67s ERROR: LoadError: Package ASEconvert errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2365 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:303 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:328 [12] _start() @ Base ./client.jl:560 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 404.3s: package tests unexpectedly errored