Package evaluation to load TrajGWAS on Julia 1.14.0-DEV.29 (7d6ae45e5a*) started at 2025-11-05T13:15:18.575 ################################################################################ # Set-up # Set-up completed after 0.13s ################################################################################ # Installation # Installing TrajGWAS... Resolving package versions... Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed Glob ───────────────────────────── v1.3.1 Installed CommonWorldInvalidations ───────── v1.0.0 Installed InlineStrings ──────────────────── v1.4.5 Installed OrderedCollections ─────────────── v1.8.1 Installed SIMDTypes ──────────────────────── v0.1.0 Installed HypothesisTests ────────────────── v0.11.6 Installed Optim ──────────────────────────── v1.13.2 Installed MUMPS_seq_jll ──────────────────── v500.800.100+0 Installed CpuId ──────────────────────────── v0.3.1 Installed NaNMath ────────────────────────── v1.1.3 Installed SentinelArrays ─────────────────── v1.4.8 Installed Xorg_libpciaccess_jll ──────────── v0.18.1+0 Installed Ipopt_jll ──────────────────────── v300.1400.1900+0 Installed StaticArrayInterface ───────────── v1.8.0 Installed QuadGK ─────────────────────────── v2.11.2 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed EnumX ──────────────────────────── v1.0.5 Installed WoodburyMatrices ───────────────── v1.0.0 Installed NLSolversBase ──────────────────── v7.10.0 Installed Tables ─────────────────────────── v1.12.1 Installed Reexport ───────────────────────── v1.2.2 Installed InverseFunctions ───────────────── v0.1.17 Installed DBInterface ────────────────────── v2.6.1 Installed Preferences ────────────────────── v1.5.0 Installed Missings ───────────────────────── v1.2.0 Installed TableTraits ────────────────────── v1.0.1 Installed Static ─────────────────────────── v1.3.1 Installed LaTeXStrings ───────────────────── v1.4.0 Installed Crayons ────────────────────────── v4.1.1 Installed UnPack ─────────────────────────── v1.0.2 Installed SortingAlgorithms ──────────────── v1.2.2 Installed ADTypes ────────────────────────── v1.18.0 Installed DiffResults ────────────────────── v1.1.0 Installed MacroTools ─────────────────────── v0.5.16 Installed CodecZstd ──────────────────────── v0.8.6 Installed DataStructures ─────────────────── v0.19.3 Installed VCFTools ───────────────────────── v0.2.10 Installed ManualMemory ───────────────────── v0.1.8 Installed DelimitedFiles ─────────────────── v1.9.1 Installed FillArrays ─────────────────────── v1.14.0 Installed CodecZlib ──────────────────────── v0.7.8 Installed HostCPUFeatures ────────────────── v0.1.17 Installed DataValueInterfaces ────────────── v1.0.0 Installed ArrayInterface ─────────────────── v7.22.0 Installed StatsBase ──────────────────────── v0.34.7 Installed VectorizationBase ──────────────── v0.21.72 Installed CommonSubexpressions ───────────── v0.3.1 Installed LayoutPointers ─────────────────── v0.1.17 Installed IrrationalConstants ────────────── v0.2.6 Installed StructUtils ────────────────────── v2.5.1 Installed BufferedStreams ────────────────── v1.2.2 Installed Hwloc_jll ──────────────────────── v2.12.2+0 Installed Roots ──────────────────────────── v2.2.10 Installed Setfield ───────────────────────── v1.1.2 Installed SPRAL_jll ──────────────────────── v2025.5.20+0 Installed PooledArrays ───────────────────── v1.4.3 Installed BenchmarkTools ─────────────────── v1.6.3 Installed PDMats ─────────────────────────── v0.11.36 Installed Interpolations ─────────────────── v0.16.2 Installed WorkerUtilities ────────────────── v1.6.1 Installed CodecXz ────────────────────────── v0.7.4 Installed DocStringExtensions ────────────── v0.9.5 Installed CompositionsBase ───────────────── v0.1.2 Installed CommonSolve ────────────────────── v0.2.4 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed SQLite ─────────────────────────── v1.6.1 Installed ForwardDiff ────────────────────── v1.2.2 Installed StatsModels ────────────────────── v0.7.7 Installed SLEEFPirates ───────────────────── v0.6.43 Installed AliasTables ────────────────────── v1.1.3 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed MathOptInterface ───────────────── v1.46.0 Installed DifferentiationInterface ───────── v0.7.10 Installed ShiftedArrays ──────────────────── v2.0.0 Installed Combinatorics ──────────────────── v1.0.3 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed SIMD ───────────────────────────── v3.7.2 Installed InvertedIndices ────────────────── v1.3.1 Installed DataAPI ────────────────────────── v1.16.0 Installed WiSER ──────────────────────────── v0.2.6 Installed StaticArraysCore ───────────────── v1.4.4 Installed AxisAlgorithms ─────────────────── v1.1.0 Installed StringManipulation ─────────────── v0.4.1 Installed SciMLPublic ────────────────────── v1.0.0 Installed Requires ───────────────────────── v1.3.1 Installed StaticArrays ───────────────────── v1.9.15 Installed GeneticVariantBase ─────────────── v0.1.2 Installed OpenBLAS32_jll ─────────────────── v0.3.29+0 Installed LogExpFunctions ────────────────── v0.3.29 Installed DiffRules ──────────────────────── v1.15.1 Installed Parsers ────────────────────────── v2.8.3 Installed JSON ───────────────────────────── v1.2.0 Installed FiniteDiff ─────────────────────── v2.29.0 Installed Rmath ──────────────────────────── v0.9.0 Installed PrettyTables ───────────────────── v3.1.0 Installed BioGenerics ────────────────────── v0.1.5 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed Distributions ──────────────────── v0.25.122 Installed StatsFuns ──────────────────────── v1.5.2 Installed XZ_jll ─────────────────────────── v5.8.1+0 Installed WeakRefStrings ─────────────────── v1.4.2 Installed JLLWrappers ────────────────────── v1.7.1 Installed StructTypes ────────────────────── v1.11.0 Installed DataFrames ─────────────────────── v1.8.1 Installed MutableArithmetics ─────────────── v1.6.7 Installed NLopt ──────────────────────────── v0.6.5 Installed ThreadingUtilities ─────────────── v0.5.5 Installed CSV ────────────────────────────── v0.10.15 Installed BGZFStreams ────────────────────── v0.3.2 Installed VariantCallFormat ──────────────── v0.5.9 Installed CategoricalArrays ──────────────── v0.10.7 Installed Accessors ──────────────────────── v0.1.42 Installed FilePathsBase ──────────────────── v0.9.24 Installed Adapt ──────────────────────────── v4.4.0 Installed HypergeometricFunctions ────────── v0.3.28 Installed ConstructionBase ───────────────── v1.6.0 Installed Compat ─────────────────────────── v4.18.1 Installed TranscodingStreams ─────────────── v0.9.13 Installed PositiveFactorizations ─────────── v0.2.4 Installed Statistics ─────────────────────── v1.11.1 Installed TrajGWAS ───────────────────────── v0.4.7 Installed StatsAPI ───────────────────────── v1.7.1 Installed ProgressMeter ──────────────────── v1.11.0 Installed LoopVectorization ──────────────── v0.12.173 Installed OffsetArrays ───────────────────── v1.17.0 Installed PrecompileTools ────────────────── v1.3.3 Installed ASL_jll ────────────────────────── v0.1.3+0 Installed CodecBzip2 ─────────────────────── v0.8.5 Installed Ratios ─────────────────────────── v0.4.5 Installed IfElse ─────────────────────────── v0.1.1 Installed CPUSummary ─────────────────────── v0.2.7 Installed Parameters ─────────────────────── v0.12.3 Installed ChainRulesCore ─────────────────── v1.26.0 Installed JSON3 ──────────────────────────── v1.14.3 Installed PtrArrays ──────────────────────── v1.3.0 Installed XML2_jll ───────────────────────── v2.13.9+0 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed Ipopt ──────────────────────────── v1.12.1 Installed SpecialFunctions ───────────────── v2.6.1 Installed LineSearches ───────────────────── v7.4.0 Installed SQLite_jll ─────────────────────── v3.48.0+0 Installed Automa ─────────────────────────── v1.1.0 Installed METIS_jll ──────────────────────── v5.1.3+0 Installed NLopt_jll ──────────────────────── v2.10.0+0 Installed PolyesterWeave ─────────────────── v0.2.2 Installed MathProgBase ───────────────────── v0.7.8 Installed SnpArrays ──────────────────────── v0.3.22 Installed BGEN ───────────────────────────── v0.2.2 Installing 16 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Bzip2 503.5 KiB Installed artifact NLopt 322.7 KiB Installed artifact Ipopt 1.3 MiB Installed artifact Libiconv 1.9 MiB Installed artifact METIS 1.1 MiB Installed artifact ASL 276.3 KiB Installed artifact XML2 2.5 MiB Installed artifact XZ 1.5 MiB Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact Hwloc 3.5 MiB Installed artifact SPRAL 691.8 KiB Installed artifact SQLite 5.0 MiB Installed artifact OpenBLAS32 10.0 MiB Installed artifact MUMPS_seq 8.6 MiB Updating `~/.julia/environments/v1.14/Project.toml` [9514c204] + TrajGWAS v0.4.7 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [6db4b851] + BGEN v0.2.2 [28d598bf] + BGZFStreams v0.3.2 [6e4b80f9] + BenchmarkTools v1.6.3 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.15 ⌅ [324d7699] + CategoricalArrays v0.10.7 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [a10d1c49] + DBInterface v2.6.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.10 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.2.2 [2447270c] + GeneticVariantBase v0.1.2 [c27321d9] + Glob v1.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.6 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [a98d9a8b] + Interpolations v0.16.2 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [b6b21f68] + Ipopt v1.12.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.2.0 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.173 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [b8f27783] + MathOptInterface v1.46.0 [fdba3010] + MathProgBase v0.7.8 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.7 [d41bc354] + NLSolversBase v7.10.0 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v2.2.10 [fdea26ae] + SIMD v3.7.2 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [0aa819cd] + SQLite v1.6.1 [431bcebd] + SciMLPublic v1.0.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [4e780e97] + SnpArrays v0.3.22 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.7 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [892a3eda] + StringManipulation v0.4.1 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] + StructUtils v2.5.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 [9514c204] + TrajGWAS v0.4.7 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [3a884ed6] + UnPack v1.0.2 [a620830f] + VCFTools v0.2.10 [28eba6e3] + VariantCallFormat v0.5.9 [3d5dd08c] + VectorizationBase v0.21.72 [ea10d353] + WeakRefStrings v1.4.2 [2ff19380] + WiSER v0.2.6 [efce3f68] + WoodburyMatrices v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [9cc047cb] + Ipopt_jll v300.1400.1900+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [d00139f3] + METIS_jll v5.1.3+0 [d7ed1dd3] + MUMPS_seq_jll v500.800.100+0 [079eb43e] + NLopt_jll v2.10.0+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [319450e9] + SPRAL_jll v2025.5.20+0 [76ed43ae] + SQLite_jll v3.48.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.1+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 20.17s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 4442.6 ms ✓ MacroTools 1597.0 ms ✓ InlineStrings 838.3 ms ✓ Reexport 1101.1 ms ✓ ConstructionBase 2024.0 ms ✓ IrrationalConstants 723.7 ms ✓ DataValueInterfaces 782.8 ms ✓ StatsAPI 1981.2 ms ✓ Combinatorics 784.7 ms ✓ CommonSolve 825.0 ms ✓ LaTeXStrings 862.1 ms ✓ Glob 1078.5 ms ✓ Statistics 966.6 ms ✓ StaticArraysCore 742.9 ms ✓ IfElse 1088.3 ms ✓ PtrArrays 941.1 ms ✓ ManualMemory 962.2 ms ✓ PositiveFactorizations 827.6 ms ✓ DataAPI 838.2 ms ✓ SciMLPublic 763.5 ms ✓ CommonWorldInvalidations 819.7 ms ✓ InvertedIndices 937.7 ms ✓ InverseFunctions 839.9 ms ✓ CompositionsBase 860.2 ms ✓ ShiftedArrays 801.8 ms ✓ EnumX 955.7 ms ✓ WorkerUtilities 1988.7 ms ✓ FillArrays 831.1 ms ✓ UnPack 927.5 ms ✓ DBInterface 1123.0 ms ✓ OrderedCollections 1433.2 ms ✓ ADTypes 1367.6 ms ✓ DocStringExtensions 1602.2 ms ✓ OffsetArrays 946.9 ms ✓ BufferedStreams 713.2 ms ✓ SIMDTypes 710.8 ms ✓ IteratorInterfaceExtensions 1735.3 ms ✓ Crayons 930.6 ms ✓ DelimitedFiles 1698.5 ms ✓ NaNMath 1016.0 ms ✓ Requires 1042.0 ms ✓ SuiteSparse 1959.8 ms ✓ CpuId 2084.3 ms ✓ MathProgBase 1330.0 ms ✓ WoodburyMatrices 2648.4 ms ✓ SentinelArrays 1527.1 ms ✓ StructTypes 1369.3 ms ✓ StructUtils 1650.9 ms ✓ ProgressMeter 1075.9 ms ✓ Compat 1084.4 ms ✓ Preferences 1988.1 ms ✓ TranscodingStreams 10702.7 ms ✓ MutableArithmetics 1582.0 ms ✓ CommonSubexpressions 739.3 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1231.9 ms ✓ Statistics → SparseArraysExt 795.5 ms ✓ DiffResults 897.2 ms ✓ AliasTables 1727.0 ms ✓ ThreadingUtilities 889.8 ms ✓ Missings 935.1 ms ✓ PooledArrays 775.2 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1520.8 ms ✓ InverseFunctions → InverseFunctionsTestExt 740.3 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1390.9 ms ✓ FillArrays → FillArraysSparseArraysExt 892.8 ms ✓ FillArrays → FillArraysStatisticsExt 878.2 ms ✓ Parameters 3345.7 ms ✓ DataStructures 734.6 ms ✓ ADTypes → ADTypesConstructionBaseExt 1741.3 ms ✓ DifferentiationInterface 1326.9 ms ✓ LogExpFunctions 694.8 ms ✓ TableTraits 778.9 ms ✓ Ratios 862.3 ms ✓ Adapt 1731.1 ms ✓ PDMats 1306.7 ms ✓ AxisAlgorithms 848.5 ms ✓ Compat → CompatLinearAlgebraExt 865.3 ms ✓ PrecompileTools 1118.0 ms ✓ JLLWrappers 1495.9 ms ✓ BioGenerics 2383.1 ms ✓ CodecZstd 1502.5 ms ✓ CodecZlib 2867.9 ms ✓ Setfield 6836.0 ms ✓ CategoricalArrays 4654.9 ms ✓ Accessors 1030.6 ms ✓ SortingAlgorithms 2205.5 ms ✓ QuadGK 1266.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 781.8 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1665.8 ms ✓ Tables 1176.6 ms ✓ ArrayInterface 1192.6 ms ✓ Adapt → AdaptSparseArraysExt 775.8 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1408.3 ms ✓ FillArrays → FillArraysPDMatsExt 2544.4 ms ✓ ChainRulesCore 2009.2 ms ✓ FilePathsBase 3026.4 ms ✓ StringManipulation 16425.1 ms ✓ SIMD 13096.1 ms ✓ StaticArrays 17008.8 ms ✓ Parsers 5172.0 ms ✓ Static 1381.4 ms ✓ OpenBLAS32_jll 1381.5 ms ✓ Bzip2_jll 1419.2 ms ✓ XZ_jll 1373.6 ms ✓ NLopt_jll 1381.6 ms ✓ Rmath_jll 1434.1 ms ✓ OpenSpecFun_jll 1353.7 ms ✓ ASL_jll 1387.3 ms ✓ SQLite_jll 1390.2 ms ✓ METIS_jll 1307.5 ms ✓ Xorg_libpciaccess_jll 1343.7 ms ✓ Libiconv_jll 1598.0 ms ✓ BGZFStreams 1663.6 ms ✓ Accessors → TestExt 2431.0 ms ✓ Accessors → LinearAlgebraExt 4314.9 ms ✓ StatsBase 823.3 ms ✓ StructUtils → StructUtilsTablesExt 716.6 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1218.5 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 1254.2 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 754.6 ms ✓ ADTypes → ADTypesChainRulesCoreExt 826.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 3025.0 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 779.8 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2534.5 ms ✓ FilePathsBase → FilePathsBaseTestExt 900.4 ms ✓ FilePathsBase → FilePathsBaseMmapExt 39502.1 ms ✓ PrettyTables 22228.6 ms ✓ Automa 1355.2 ms ✓ StaticArrays → StaticArraysStatisticsExt 1406.4 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1426.3 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1389.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1308.4 ms ✓ Adapt → AdaptStaticArraysExt 1423.9 ms ✓ Accessors → StaticArraysExt 13699.9 ms ✓ JSON3 7286.7 ms ✓ JSON 924.8 ms ✓ InlineStrings → ParsersExt 897.5 ms ✓ BitTwiddlingConvenienceFunctions 2295.2 ms ✓ CPUSummary 10611.9 ms ✓ StaticArrayInterface 1604.0 ms ✓ CodecBzip2 1544.7 ms ✓ CodecXz 1429.3 ms ✓ Rmath 4891.7 ms ✓ SpecialFunctions 1456.3 ms ✓ MUMPS_seq_jll 1422.6 ms ✓ XML2_jll 6856.4 ms ✓ Roots 1668.0 ms ✓ GeneticVariantBase 1391.5 ms ✓ PDMats → StatsBaseExt 1280.0 ms ✓ FiniteDiff 89799.6 ms ✓ DataFrames [ Info: Compiling VCF parser... 19565.4 ms ✓ VariantCallFormat 4031.2 ms ✓ Interpolations 3228.5 ms ✓ BenchmarkTools 2398.2 ms ✓ WeakRefStrings 1433.6 ms ✓ HostCPUFeatures 1825.5 ms ✓ PolyesterWeave 1066.6 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1561.1 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1040.2 ms ✓ CloseOpenIntervals 1260.4 ms ✓ LayoutPointers 3828.9 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2293.4 ms ✓ HypergeometricFunctions 1191.1 ms ✓ DiffRules 1392.4 ms ✓ Hwloc_jll 1058.9 ms ✓ Roots → RootsChainRulesCoreExt 1309.9 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1156.5 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 919.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 27147.9 ms ✓ CSV 4283.8 ms ✓ SQLite 15372.8 ms ✓ VectorizationBase 2843.8 ms ✓ StatsFuns 6753.7 ms ✓ ForwardDiff 1447.2 ms ✓ SPRAL_jll 7532.7 ms ✓ BGEN 4818.0 ms ✓ SLEEFPirates 3469.8 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 977.9 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 4958.7 ms ✓ StatsModels 9007.4 ms ✓ Distributions 1833.9 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1784.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1609.3 ms ✓ Roots → RootsForwardDiffExt 2843.2 ms ✓ Interpolations → InterpolationsForwardDiffExt 77336.6 ms ✓ MathOptInterface 1493.2 ms ✓ Ipopt_jll 39288.8 ms ✓ LoopVectorization 3387.4 ms ✓ Distributions → DistributionsTestExt 3001.2 ms ✓ Distributions → DistributionsChainRulesCoreExt 4206.7 ms ✓ HypothesisTests 2173.0 ms ✓ NLSolversBase 7561.0 ms ✓ NLopt 1161.8 ms ✓ Ipopt 3372.6 ms ✓ LoopVectorization → SpecialFunctionsExt 3464.3 ms ✓ LoopVectorization → ForwardDiffExt 7637.9 ms ✓ VCFTools 4264.9 ms ✓ LineSearches 44134.2 ms ✓ Ipopt → IpoptMathOptInterfaceExt ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3148  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2994  [7] include_string  @ ./loading.jl:3004 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ VariantCallFormat │ [ Info: Compiling VCF parser... └ Precompilation completed after 833.55s ################################################################################ # Loading # Loading TrajGWAS... ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3148  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2994  [7] include_string  @ ./loading.jl:3004 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3148  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2994  [7] include_string  @ ./loading.jl:3004 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ SnpArrays │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: SnpArrays Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.14/SnpArrays/jl_sFcNNp" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/TrajGWAS/y0Cm6/src/TrajGWAS.jl:1 Loading failed after 84.29s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using TrajGWAS'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:611 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:526 [3] run(::Cmd) @ Base ./process.jl:523 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [7] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 977.44s: package fails to precompile