Package evaluation to load Pseudoseq on Julia 1.14.0-DEV.29 (7d6ae45e5a*) started at 2025-11-05T07:18:54.351


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# Set-up
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Set-up completed after 0.12s


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# Installation
#

Installing Pseudoseq...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [5fa9f68e] + Pseudoseq v0.2.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
⌅ [67c07d97] + Automa v0.8.4
  [47718e42] + BioGenerics v0.1.5
⌅ [7e6ae17a] + BioSequences v2.0.6
⌅ [3c28c6f8] + BioSymbols v4.0.4
  [861a8166] + Combinatorics v1.0.3
⌅ [c2308a5c] + FASTX v1.2.0
⌅ [3aa97884] + GenomeGraphs v0.1.0
  [1cb3b9ac] + IndexableBitVectors v1.0.0
  [5fa9f68e] + Pseudoseq v0.2.0
⌅ [70a005b8] + ReadDatastores v0.1.0
⌅ [860ef19b] + StableRNGs v0.1.2
⌅ [3bb67fe8] + TranscodingStreams v0.9.13
  [7200193e] + Twiddle v1.1.2
  [2a0f44e3] + Base64 v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [8dfed614] + Test v1.11.0
  [4ec0a83e] + Unicode v1.11.0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 5.36s


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# Precompilation
#

Precompiling PkgEval dependencies...
     Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml`
    Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml`

Precompiling package dependencies...
Precompiling packages...
   2157.7 ms  ✓ TranscodingStreams
   1576.8 ms  ✓ BioGenerics
   2256.3 ms  ✓ Automa
WARNING: Constructor for type "Char" was extended in `BioSymbols` without explicit qualification or import.
  NOTE: Assumed "Char" refers to `Base.Char`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function Char end`.
  Hint: To silence the warning, qualify `Char` as `Base.Char` in the method signature or explicitly `import Base: Char`.
  13980.1 ms  ✓ BioSymbols
[ Info: Compiling bit-parallel GC counter for LongSequence{<:NucleicAcidAlphabet}
[ Info: Compiling bit-parallel mismatch counter for LongSequence{<:NucleicAcidAlphabet}
[ Info: Compiling bit-parallel match counter for LongSequence{<:NucleicAcidAlphabet}
[ Info: Compiling bit-parallel ambiguity counter...
[ Info: 	For a single LongSequence{<:NucleicAcidAlphabet}
[ Info: 	For a pair of LongSequence{<:NucleicAcidAlphabet}s
[ Info: Compiling bit-parallel certainty counter for LongSequence{<:NucleicAcidAlphabet}
[ Info: Compiling bit-parallel gap counter for LongSequence{<:NucleicAcidAlphabet}
   5171.9 ms  ✓ BioSequences
  14852.8 ms  ✓ FASTX
   3531.5 ms  ✓ ReadDatastores
   3040.2 ms  ✓ GenomeGraphs
WARNING: method definition for amplify at /home/pkgeval/.julia/packages/Pseudoseq/qFEma/src/sequencing/Molecules.jl:77 declares type variable T but does not use it.
   3079.2 ms  ✓ Pseudoseq
  9 dependencies successfully precompiled in 50 seconds. 14 already precompiled.

  3 dependencies had output during precompilation:
┌ BioSequences
│  [ Info: Compiling bit-parallel GC counter for LongSequence{<:NucleicAcidAlphabet}
│  [ Info: Compiling bit-parallel mismatch counter for LongSequence{<:NucleicAcidAlphabet}
│  [ Info: Compiling bit-parallel match counter for LongSequence{<:NucleicAcidAlphabet}
│  [ Info: Compiling bit-parallel ambiguity counter...
│  [ Info: 	For a single LongSequence{<:NucleicAcidAlphabet}
│  [ Info: 	For a pair of LongSequence{<:NucleicAcidAlphabet}s
│  [ Info: Compiling bit-parallel certainty counter for LongSequence{<:NucleicAcidAlphabet}
│  [ Info: Compiling bit-parallel gap counter for LongSequence{<:NucleicAcidAlphabet}
└  
┌ Pseudoseq
│  WARNING: method definition for amplify at /home/pkgeval/.julia/packages/Pseudoseq/qFEma/src/sequencing/Molecules.jl:77 declares type variable T but does not use it.
└  
┌ BioSymbols
│  WARNING: Constructor for type "Char" was extended in `BioSymbols` without explicit qualification or import.
│    NOTE: Assumed "Char" refers to `Base.Char`. This behavior is deprecated and may differ in future versions.
│    NOTE: This behavior may have differed in Julia versions prior to 1.12.
│    Hint: If you intended to create a new generic function of the same name, use `function Char end`.
│    Hint: To silence the warning, qualify `Char` as `Base.Char` in the method signature or explicitly `import Base: Char`.
└  

Precompilation completed after 58.16s


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# Loading
#

Loading Pseudoseq...

Loading completed after 1.75s

PkgEval succeeded after 75.82s