Package evaluation to load PhyloClustering on Julia 1.14.0-DEV.29 (7d6ae45e5a*) started at 2025-11-05T16:30:30.150 ################################################################################ # Set-up # Set-up completed after 0.1s ################################################################################ # Installation # Installing PhyloClustering... Resolving package versions... Installed Formatting ────────────────── v0.4.3 Installed ImageIO ───────────────────── v0.6.9 Installed libaom_jll ────────────────── v3.13.1+0 Installed Libuuid_jll ───────────────── v2.41.2+0 Installed libass_jll ────────────────── v0.17.4+0 Installed MosaicViews ───────────────── v0.3.4 Installed PolygonOps ────────────────── v0.1.2 Installed MultivariateStats ─────────── v0.10.3 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed Extents ───────────────────── v0.1.6 Installed InlineStrings ─────────────── v1.4.5 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed NearestNeighbors ──────────── v0.4.22 Installed Functors ──────────────────── v0.4.12 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed OrderedCollections ────────── v1.8.1 Installed UnsafeArrays ──────────────── v1.0.8 Installed Optim ─────────────────────── v1.13.2 Installed AbstractLattices ──────────── v0.3.1 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed Giflib_jll ────────────────── v5.2.3+0 Installed SentinelArrays ────────────── v1.4.8 Installed Distances ─────────────────── v0.10.12 Installed NaNMath ───────────────────── v1.1.3 Installed QuadGK ────────────────────── v2.11.2 Installed Graphics ──────────────────── v1.1.3 Installed FileIO ────────────────────── v1.17.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Opus_jll ──────────────────── v1.5.2+0 Installed ScopedValues ──────────────── v1.5.0 Installed SimplePolynomials ─────────── v0.2.18 Installed WoodburyMatrices ──────────── v1.0.0 Installed Ogg_jll ───────────────────── v1.3.6+0 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed Arpack ────────────────────── v0.5.4 Installed Tables ────────────────────── v1.12.1 Installed EnumX ─────────────────────── v1.0.5 Installed NLSolversBase ─────────────── v7.10.0 Installed LZO_jll ───────────────────── v2.10.3+0 Installed Reexport ──────────────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed TableTraits ───────────────── v1.0.1 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Preferences ───────────────── v1.5.0 Installed Polynomials ───────────────── v4.0.21 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed Imath_jll ─────────────────── v3.1.11+0 Installed MappedArrays ──────────────── v0.4.2 Installed Crayons ───────────────────── v4.1.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed SortingAlgorithms ─────────── v1.2.2 Installed RangeArrays ───────────────── v0.3.2 Installed Grisu ─────────────────────── v1.0.2 Installed UnPack ────────────────────── v1.0.2 Installed CRlibm ────────────────────── v1.0.2 Installed Format ────────────────────── v1.3.7 Installed ADTypes ───────────────────── v1.18.0 Installed Inflate ───────────────────── v0.1.5 Installed DiffResults ───────────────── v1.1.0 Installed DataStructures ────────────── v0.18.22 Installed MacroTools ────────────────── v0.5.16 Installed ColorBrewer ───────────────── v0.4.2 Installed FillArrays ────────────────── v1.14.0 Installed ParallelKMeans ────────────── v1.1.0 Installed AbstractTrees ─────────────── v0.4.5 Installed OpenEXR_jll ───────────────── v3.2.4+0 Installed Packing ───────────────────── v0.5.1 Installed MakieCore ─────────────────── v0.7.3 Installed DelimitedFiles ────────────── v1.9.1 Installed LazyModules ───────────────── v0.3.1 Installed oneTBB_jll ────────────────── v2022.0.0+1 Installed UnicodeFun ────────────────── v0.4.1 Installed x264_jll ──────────────────── v10164.0.1+0 Installed CodecZlib ─────────────────── v0.7.8 Installed Cairo ─────────────────────── v1.1.1 Installed Observables ───────────────── v0.5.5 Installed StatsBase ─────────────────── v0.33.21 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed CairoMakie ────────────────── v0.11.9 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed MathTeXEngine ─────────────── v0.5.7 Installed CEnum ─────────────────────── v0.5.0 Installed ArrayInterface ────────────── v7.22.0 Installed DataValueInterfaces ───────── v1.0.0 Installed CommonSubexpressions ──────── v0.3.1 Installed Libffi_jll ────────────────── v3.4.7+0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed Expat_jll ─────────────────── v2.7.3+0 Installed IrrationalConstants ───────── v0.2.6 Installed StructUtils ───────────────── v2.5.1 Installed Clustering ────────────────── v0.15.8 Installed IntegerMathUtils ──────────── v0.1.3 Installed isoband_jll ───────────────── v0.2.3+0 Installed libpng_jll ────────────────── v1.6.50+0 Installed Contour ───────────────────── v0.6.3 Installed SimpleTraits ──────────────── v0.9.5 Installed RoundingEmulator ──────────── v0.2.1 Installed ColorVectorSpace ──────────── v0.10.0 Installed ImageMetadata ─────────────── v0.9.10 Installed StableRNGs ────────────────── v1.0.3 Installed libfdk_aac_jll ────────────── v2.0.4+0 Installed libsixel_jll ──────────────── v1.10.5+0 Installed Interpolations ────────────── v0.16.2 Installed PikaParser ────────────────── v0.6.1 Installed Scratch ───────────────────── v1.3.0 Installed libwebp_jll ───────────────── v1.6.0+0 Installed FFMPEG_jll ────────────────── v8.0.0+0 Installed Setfield ──────────────────── v1.1.2 Installed ShaderAbstractions ────────── v0.4.1 Installed CRlibm_jll ────────────────── v1.0.1+0 Installed PooledArrays ──────────────── v1.4.3 Installed WeakKeyIdDicts ────────────── v0.1.0 Installed PDMats ────────────────────── v0.11.35 Installed ImageCore ─────────────────── v0.10.5 Installed FASTX ─────────────────────── v2.1.7 Installed WorkerUtilities ───────────── v1.6.1 Installed AxisArrays ────────────────── v0.4.8 Installed DocStringExtensions ───────── v0.9.5 Installed PNGFiles ──────────────────── v0.4.4 Installed BioSequences ──────────────── v3.5.0 Installed JpegTurbo ─────────────────── v0.1.6 Installed ForwardDiff ───────────────── v1.2.2 Installed StableHashTraits ──────────── v1.3.4 Installed ColorSchemes ──────────────── v3.31.0 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed DifferentiationInterface ──── v0.7.10 Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0 Installed FreeType ──────────────────── v4.1.1 Installed Multisets ─────────────────── v0.4.5 Installed LightXML ──────────────────── v0.9.3 Installed PkgVersion ────────────────── v0.3.3 Installed RelocatableFolders ────────── v1.0.1 Installed StackViews ────────────────── v0.1.2 Installed KernelDensity ─────────────── v0.6.10 Installed StatsModels ───────────────── v0.7.7 Installed StringViews ───────────────── v1.3.5 Installed AliasTables ───────────────── v1.1.3 Installed HashArrayMappedTries ──────── v0.2.0 Installed ShiftedArrays ─────────────── v2.0.0 Installed Combinatorics ─────────────── v1.0.3 Installed SIMD ──────────────────────── v3.7.2 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed RecipesBase ───────────────── v1.3.4 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed Netpbm ────────────────────── v1.1.1 Installed ImageAxes ─────────────────── v0.6.12 Installed GaussianMixtures ──────────── v0.3.13 Installed Colors ────────────────────── v0.12.11 Installed Twiddle ───────────────────── v1.1.2 Installed StaticArraysCore ──────────── v1.4.4 Installed StaticArrays ──────────────── v1.9.15 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed Mods ──────────────────────── v2.2.6 Installed AbstractFFTs ──────────────── v1.5.0 Installed ColorTypes ────────────────── v0.11.5 Installed QOI ───────────────────────── v1.0.1 Installed AxisAlgorithms ────────────── v1.1.0 Installed StringManipulation ────────── v0.4.1 Installed Requires ──────────────────── v1.3.1 Installed Glib_jll ──────────────────── v2.86.0+0 Installed BaseDirs ──────────────────── v1.3.2 Installed SimplePartitions ──────────── v0.3.3 Installed LogExpFunctions ───────────── v0.3.29 Installed DiffRules ─────────────────── v1.15.1 Installed JSON ──────────────────────── v1.2.0 Installed FreeTypeAbstraction ───────── v0.10.8 Installed PrettyTables ──────────────── v3.1.0 Installed Parsers ───────────────────── v2.8.3 Installed Distributions ─────────────── v0.25.122 Installed FiniteDiff ────────────────── v2.29.0 Installed Rmath ─────────────────────── v0.9.0 Installed Arpack_jll ────────────────── v3.5.1+1 Installed BioGenerics ───────────────── v0.1.5 Installed GeoFormatTypes ────────────── v0.4.4 Installed FilePaths ─────────────────── v0.8.3 Installed StatsFuns ─────────────────── v1.5.2 Installed GridLayoutBase ────────────── v0.10.2 Installed OpenEXR ───────────────────── v0.3.3 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed PhyloClustering ───────────── v0.2.0 Installed SignedDistanceFields ──────── v0.4.0 Installed WeakRefStrings ────────────── v1.4.2 Installed JLLWrappers ───────────────── v1.7.1 Installed XZ_jll ────────────────────── v5.8.1+0 Installed Primes ────────────────────── v0.5.7 Installed GeometryBasics ────────────── v0.4.11 Installed DataFrames ────────────────── v1.8.1 Installed PhyloNetworks ─────────────── v0.16.4 Installed x265_jll ──────────────────── v4.1.0+0 Installed Pango_jll ─────────────────── v1.56.4+0 Installed ExactPredicates ───────────── v2.2.9 Installed StructTypes ───────────────── v1.11.0 Installed IterTools ─────────────────── v1.10.0 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed StatisticalTraits ─────────── v3.5.0 Installed NLopt ─────────────────────── v1.2.1 Installed TiffImages ────────────────── v0.11.6 Installed FilePathsBase ─────────────── v0.9.24 Installed JpegTurbo_jll ─────────────── v3.1.3+0 Installed PaddedViews ───────────────── v0.5.12 Installed GLM ───────────────────────── v1.9.0 Installed Libmount_jll ──────────────── v2.41.2+0 Installed Adapt ─────────────────────── v4.4.0 Installed JLD2 ──────────────────────── v0.5.15 Installed ConstructionBase ──────────── v1.6.0 Installed HypergeometricFunctions ───── v0.3.28 Installed TriplotBase ───────────────── v0.1.0 Installed Sixel ─────────────────────── v0.1.5 Installed LinearAlgebraX ────────────── v0.2.10 Installed TranscodingStreams ────────── v0.11.3 Installed Compat ────────────────────── v4.18.1 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed PlotUtils ─────────────────── v1.4.4 Installed TensorCore ────────────────── v0.1.1 Installed EarCut_jll ────────────────── v2.2.4+0 Installed RingLists ─────────────────── v0.2.9 Installed Statistics ────────────────── v1.11.1 Installed PositiveFactorizations ────── v0.2.4 Installed ImageBase ─────────────────── v0.1.7 Installed StatsAPI ──────────────────── v1.7.1 Installed StructArrays ──────────────── v0.6.21 Installed PrecompileTools ───────────── v1.3.3 Installed ProgressMeter ─────────────── v1.11.0 Installed WebP ──────────────────────── v0.1.3 Installed OffsetArrays ──────────────── v1.17.0 Installed BioSymbols ────────────────── v5.2.0 Installed TupleTools ────────────────── v1.6.0 Installed Ratios ────────────────────── v0.4.5 Installed DelaunayTriangulation ─────── v0.8.12 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed Animations ────────────────── v0.4.2 Installed ChainRulesCore ────────────── v1.26.0 Installed Makie ─────────────────────── v0.20.8 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed LAME_jll ──────────────────── v3.100.3+0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed CSV ───────────────────────── v0.10.15 Installed libvorbis_jll ─────────────── v1.3.8+0 Installed Parameters ────────────────── v0.12.3 Installed Isoband ───────────────────── v0.1.1 Installed IntervalArithmetic ────────── v1.0.1 Installed PtrArrays ─────────────────── v1.3.0 Installed ScikitLearnBase ───────────── v0.5.0 Installed XML2_jll ──────────────────── v2.15.1+0 Installed ScientificTypesBase ───────── v3.0.0 Installed FixedPointNumbers ─────────── v0.8.5 Installed Showoff ───────────────────── v1.0.3 Installed IntervalSets ──────────────── v0.7.11 Installed SpecialFunctions ──────────── v2.6.1 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed FFTW ──────────────────────── v1.10.0 Installed LineSearches ──────────────── v7.4.0 Installed Automa ────────────────────── v1.1.0 Installed GeoInterface ──────────────── v1.4.1 Installed IndirectArrays ────────────── v1.0.0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed Permutations ──────────────── v0.4.23 Installed MLJModelInterface ─────────── v1.12.0 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed SimpleRandom ──────────────── v0.3.2 Installed SimpleGraphs ──────────────── v0.8.7 Installing 56 artifacts Installed artifact FriBidi 78.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact EarCut 80.5 KiB Installed artifact Graphite2 120.2 KiB Installed artifact libsixel 177.3 KiB Installed artifact FreeType2 1.5 MiB Installed artifact LERC 272.9 KiB Installed artifact Giflib 154.6 KiB Installed artifact CRlibm 169.5 KiB Installed artifact LZO 208.9 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Libiconv 1.9 MiB Installed artifact HarfBuzz 1.7 MiB Installed artifact GettextRuntime 543.0 KiB Installed artifact libaom 6.4 MiB Installed artifact Arpack 147.2 KiB Installed artifact Imath 182.8 KiB Installed artifact LAME 292.5 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Pixman 372.2 KiB Installed artifact isoband 25.7 KiB Installed artifact x264 2.1 MiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact Expat 283.3 KiB Installed artifact libass 427.8 KiB Installed artifact OpenEXR 1.9 MiB Installed artifact Opus 925.5 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Bzip2 503.5 KiB Installed artifact Libffi 44.2 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact libfdk_aac 2.8 MiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact XZ 1.5 MiB Installed artifact FFTW 2.2 MiB Installed artifact Ogg 250.3 KiB Installed artifact libpng 328.4 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Libtiff 2.3 MiB Installed artifact XML2 2.2 MiB Installed artifact Libuuid 3.7 MiB Installed artifact Libmount 6.5 MiB Installed artifact x265 1.4 MiB Installed artifact NLopt 322.7 KiB Installed artifact FFMPEG 11.7 MiB Installed artifact libvorbis 271.0 KiB Installed artifact Cairo 2.2 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact libwebp 2.6 MiB Installed artifact Pango 1.1 MiB Installed artifact OpenBLASConsistentFPCSR 9.9 MiB Installed artifact Glib 7.7 MiB Installed artifact Xorg_libX11 13.9 MiB Updating `~/.julia/environments/v1.14/Project.toml` [2e4ec7c6] + PhyloClustering v0.2.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [621f4979] + AbstractFFTs v1.5.0 [398f06c4] + AbstractLattices v0.3.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.22.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [18cc8868] + BaseDirs v1.3.2 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.0 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [336ed68f] + CSV v0.10.15 [159f3aea] + Cairo v1.1.1 ⌅ [13f3f980] + CairoMakie v0.11.9 [d360d2e6] + ChainRulesCore v1.26.0 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.2 [35d6a980] + ColorSchemes v3.31.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌅ [927a84f5] + DelaunayTriangulation v0.8.12 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.10 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.9 [411431e0] + Extents v0.1.6 [c2308a5c] + FASTX v2.1.7 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.17.1 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.14.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [59287772] + Formatting v0.4.3 [f6369f11] + ForwardDiff v1.2.2 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 ⌅ [d9f16b24] + Functors v0.4.12 [38e38edf] + GLM v1.9.0 [cc18c42c] + GaussianMixtures v0.3.13 [68eda718] + GeoFormatTypes v0.4.4 ⌃ [cf35fbd7] + GeoInterface v1.4.1 ⌅ [5c1252a2] + GeometryBasics v0.4.11 [a2bd30eb] + Graphics v1.1.3 ⌅ [3955a311] + GridLayoutBase v0.10.2 [42e2da0e] + Grisu v1.0.2 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [18e54dd8] + IntegerMathUtils v0.1.3 [a98d9a8b] + Interpolations v0.16.2 [d1acc4aa] + IntervalArithmetic v1.0.1 [8197267c] + IntervalSets v0.7.11 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.2.0 [b835a17e] + JpegTurbo v0.1.6 [5ab0869b] + KernelDensity v0.6.10 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [9c8b4983] + LightXML v0.9.3 [d3d80556] + LineSearches v7.4.0 [9b3f67b0] + LinearAlgebraX v0.2.10 [2ab3a3ac] + LogExpFunctions v0.3.29 [e80e1ace] + MLJModelInterface v1.12.0 [1914dd2f] + MacroTools v0.5.16 ⌅ [ee78f7c6] + Makie v0.20.8 ⌅ [20f20a25] + MakieCore v0.7.3 [dbb5928d] + MappedArrays v0.4.2 ⌅ [0a4f8689] + MathTeXEngine v0.5.7 [e1d29d7a] + Missings v1.2.0 [7475f97c] + Mods v2.2.6 [e94cdb99] + MosaicViews v0.3.4 [3b2b4ff1] + Multisets v0.4.5 [6f286f6a] + MultivariateStats v0.10.3 [d41bc354] + NLSolversBase v7.10.0 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.22 [f09324ee] + Netpbm v1.1.1 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [f57f5aa1] + PNGFiles v0.4.4 [19eb6ba3] + Packing v0.5.1 [5432bcbf] + PaddedViews v0.5.12 [42b8e9d4] + ParallelKMeans v1.1.0 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [2ae35dd2] + Permutations v0.4.23 [2e4ec7c6] + PhyloClustering v0.2.0 ⌅ [33ad39ac] + PhyloNetworks v0.16.4 [3bbf5609] + PikaParser v0.6.1 [eebad327] + PkgVersion v0.3.3 [995b91a9] + PlotUtils v1.4.4 [647866c9] + PolygonOps v0.1.2 ⌃ [f27b6e38] + Polynomials v4.0.21 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [1fd47b50] + QuadGK v2.11.2 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [286e9d63] + RingLists v0.2.9 [79098fc4] + Rmath v0.9.0 [5eaf0fd0] + RoundingEmulator v0.2.1 [fdea26ae] + SIMD v3.7.2 [30f210dd] + ScientificTypesBase v3.0.0 [6e75b9c4] + ScikitLearnBase v0.5.0 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 ⌅ [65257c39] + ShaderAbstractions v0.4.1 [1277b4bf] + ShiftedArrays v2.0.0 [992d4aef] + Showoff v1.0.3 [73760f76] + SignedDistanceFields v0.4.0 [55797a34] + SimpleGraphs v0.8.7 [ec83eff0] + SimplePartitions v0.3.3 [cc47b68c] + SimplePolynomials v0.2.18 [a6525b86] + SimpleRandom v0.3.2 [699a6c99] + SimpleTraits v0.9.5 [45858cf5] + Sixel v0.1.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 ⌅ [c5dd0088] + StableHashTraits v1.3.4 [860ef19b] + StableRNGs v1.0.3 [cae243ae] + StackViews v0.1.2 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.5 ⌅ [09ab397b] + StructArrays v0.6.21 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] + StructUtils v2.5.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.6 [3bb67fe8] + TranscodingStreams v0.11.3 [981d1d27] + TriplotBase v0.1.0 [9d95972d] + TupleTools v1.6.0 [7200193e] + Twiddle v1.1.2 [3a884ed6] + UnPack v1.0.2 [1cfade01] + UnicodeFun v0.4.1 [c4a57d5a] + UnsafeArrays v1.0.8 [ecbed89c] + WeakKeyIdDicts v0.1.0 [ea10d353] + WeakRefStrings v1.4.2 [e3aaa7dc] + WebP v0.1.3 [efce3f68] + WoodburyMatrices v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [68821587] + Arpack_jll v3.5.1+1 [6e34b625] + Bzip2_jll v1.0.9+0 [4e9b3aee] + CRlibm_jll v1.0.1+0 [83423d85] + Cairo_jll v1.18.5+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.7.3+0 [b22a6f82] + FFMPEG_jll v8.0.0+0 [f5851436] + FFTW_jll v3.3.11+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [59f7168a] + Giflib_jll v5.2.3+0 [7746bdde] + Glib_jll v2.86.0+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [905a6f67] + Imath_jll v3.1.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [856f044c] + MKL_jll v2025.2.0+0 [079eb43e] + NLopt_jll v2.10.0+0 [e7412a2a] + Ogg_jll v1.3.6+0 [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] + OpenEXR_jll v3.2.4+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.5.2+0 [36c8627f] + Pango_jll v1.56.4+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 [02c8fc9c] + XML2_jll v2.15.1+0 [ffd25f8a] + XZ_jll v5.8.1+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [9a68df92] + isoband_jll v0.2.3+0 [a4ae2306] + libaom_jll v3.13.1+0 [0ac62f75] + libass_jll v0.17.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [b53b4c65] + libpng_jll v1.6.50+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [c5f90fcd] + libwebp_jll v1.6.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [8bf52ea8] + CRC32c v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.9.9 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.67.1+0 [3f19e933] + p7zip_jll v17.6.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 29.0s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Project No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` Manifest No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 4130.8 ms ✓ MacroTools 1622.3 ms ✓ InlineStrings 791.0 ms ✓ Reexport 869.6 ms ✓ MappedArrays 888.3 ms ✓ TensorCore 1094.7 ms ✓ ConstructionBase 1127.4 ms ✓ Mods 2074.4 ms ✓ IrrationalConstants 975.8 ms ✓ DataValueInterfaces 903.1 ms ✓ StatsAPI 2468.0 ms ✓ Format 1113.8 ms ✓ Observables 898.6 ms ✓ Twiddle 933.1 ms ✓ RoundingEmulator 845.7 ms ✓ PolygonOps 1185.4 ms ✓ IterTools 1421.4 ms ✓ IntervalSets 1160.9 ms ✓ CEnum 1647.5 ms ✓ Functors 2160.1 ms ✓ Combinatorics 1164.0 ms ✓ StringViews 1110.1 ms ✓ RingLists 1022.4 ms ✓ Inflate 894.1 ms ✓ Contour 1018.9 ms ✓ TupleTools 1288.4 ms ✓ TranscodingStreams 851.1 ms ✓ LaTeXStrings 1128.6 ms ✓ Statistics 986.4 ms ✓ StaticArraysCore 902.8 ms ✓ WeakKeyIdDicts 933.4 ms ✓ StableRNGs 782.0 ms ✓ AbstractLattices 941.5 ms ✓ GeoFormatTypes 854.4 ms ✓ PtrArrays 1242.6 ms ✓ Grisu 994.2 ms ✓ PositiveFactorizations 879.3 ms ✓ DataAPI 810.1 ms ✓ InvertedIndices 1174.6 ms ✓ Multisets 1017.8 ms ✓ LazyModules 887.7 ms ✓ ShiftedArrays 1186.3 ms ✓ AbstractTrees 1129.8 ms ✓ AbstractFFTs 953.5 ms ✓ EnumX 1029.3 ms ✓ WorkerUtilities 2016.9 ms ✓ FillArrays 840.0 ms ✓ IntegerMathUtils 859.4 ms ✓ ScientificTypesBase 960.1 ms ✓ TriplotBase 870.9 ms ✓ IndirectArrays 802.8 ms ✓ UnPack 1056.2 ms ✓ Extents 840.5 ms ✓ RangeArrays 1266.7 ms ✓ OrderedCollections 943.3 ms ✓ HashArrayMappedTries 1346.3 ms ✓ ADTypes 1111.3 ms ✓ DocStringExtensions 1053.0 ms ✓ UnsafeArrays 4582.2 ms ✓ BaseDirs 1617.8 ms ✓ OffsetArrays 755.3 ms ✓ IteratorInterfaceExtensions 1837.1 ms ✓ Crayons 1022.8 ms ✓ DelimitedFiles ┌ Warning: DEPRECATION NOTICE │ │ Formatting.jl has been unmaintained for a while, with some serious │ correctness bugs compromising the original purpose of the package. As a result, │ it has been deprecated - consider using an alternative, such as │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly. │ │ If you are not using Formatting.jl as a direct dependency, please consider │ opening an issue on any packages you are using that do use it as a dependency. │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which │ package originally brings it in as a dependency. └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12 1062.2 ms ✓ Formatting 1068.8 ms ✓ NaNMath 1192.4 ms ✓ Requires 1285.1 ms ✓ SuiteSparse 1457.6 ms ✓ WoodburyMatrices 1000.8 ms ✓ Scratch 2825.7 ms ✓ SentinelArrays 1626.4 ms ✓ StructTypes 1822.9 ms ✓ StructUtils 1786.0 ms ✓ ProgressMeter 3349.7 ms ✓ UnicodeFun 1175.3 ms ✓ Compat 1184.0 ms ✓ Preferences 5011.6 ms ✓ PkgVersion 1767.3 ms ✓ CommonSubexpressions 3285.0 ms ✓ SimpleTraits 963.7 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 2879.3 ms ✓ MakieCore 844.5 ms ✓ IntervalSets → IntervalSetsRandomExt 775.3 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 1161.1 ms ✓ Permutations 983.7 ms ✓ BioGenerics 1034.4 ms ✓ CodecZlib 837.1 ms ✓ SignedDistanceFields 1334.8 ms ✓ Statistics → SparseArraysExt 3959.7 ms ✓ FixedPointNumbers 1011.1 ms ✓ ScikitLearnBase 1968.2 ms ✓ Distances 818.6 ms ✓ IntervalSets → IntervalSetsStatisticsExt 886.8 ms ✓ DiffResults 979.9 ms ✓ AliasTables 862.0 ms ✓ Showoff 969.8 ms ✓ Missings 1046.3 ms ✓ PooledArrays 3688.7 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1559.1 ms ✓ FillArrays → FillArraysSparseArraysExt 992.3 ms ✓ FillArrays → FillArraysStatisticsExt 1218.3 ms ✓ Primes 925.6 ms ✓ StatisticalTraits 1969.6 ms ✓ GeoInterface 982.1 ms ✓ Parameters 866.2 ms ✓ ScopedValues 776.6 ms ✓ ADTypes → ADTypesConstructionBaseExt 1777.5 ms ✓ DifferentiationInterface 1369.7 ms ✓ LogExpFunctions 1581.6 ms ✓ PikaParser 938.4 ms ✓ PaddedViews 917.0 ms ✓ StackViews 774.2 ms ✓ TableTraits 894.2 ms ✓ Ratios 987.1 ms ✓ Adapt 9273.7 ms ✓ FileIO 1811.8 ms ✓ PDMats 1370.6 ms ✓ AxisAlgorithms 1121.9 ms ✓ RelocatableFolders 935.1 ms ✓ Compat → CompatLinearAlgebraExt 1455.5 ms ✓ PrecompileTools 1310.3 ms ✓ JLLWrappers 3024.1 ms ✓ Setfield 1595.5 ms ✓ AxisArrays 4425.9 ms ✓ ColorTypes 1252.0 ms ✓ Distances → DistancesSparseArraysExt 3249.1 ms ✓ MLJModelInterface 1328.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 955.0 ms ✓ MosaicViews 1793.8 ms ✓ Tables 937.5 ms ✓ Ratios → RatiosFixedPointNumbersExt 1448.9 ms ✓ ArrayInterface 1904.2 ms ✓ Adapt → AdaptSparseArraysExt 1137.2 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1651.9 ms ✓ FillArrays → FillArraysPDMatsExt 2723.2 ms ✓ ChainRulesCore 2206.1 ms ✓ FilePathsBase 3886.6 ms ✓ DataStructures 2623.6 ms ✓ BioSymbols 3163.9 ms ✓ StringManipulation 16447.5 ms ✓ SIMD 13532.9 ms ✓ StaticArrays 2910.4 ms ✓ RecipesBase 16913.7 ms ✓ Parsers 46634.7 ms ✓ JLD2 1412.3 ms ✓ Libffi_jll 1402.6 ms ✓ LZO_jll 1441.8 ms ✓ EarCut_jll 1528.6 ms ✓ Bzip2_jll 2117.7 ms ✓ isoband_jll 1659.6 ms ✓ OpenBLASConsistentFPCSR_jll 1678.2 ms ✓ XZ_jll 1844.8 ms ✓ NLopt_jll 1420.7 ms ✓ Rmath_jll 1469.7 ms ✓ OpenSpecFun_jll 1268.5 ms ✓ Xorg_xtrans_jll 1496.5 ms ✓ Opus_jll 5056.7 ms ✓ IntelOpenMP_jll 1486.2 ms ✓ x265_jll 1517.5 ms ✓ libpng_jll 1437.3 ms ✓ CRlibm_jll 5203.7 ms ✓ oneTBB_jll 1363.3 ms ✓ Imath_jll 1212.4 ms ✓ Arpack_jll 1390.8 ms ✓ Libmount_jll 1416.8 ms ✓ libfdk_aac_jll 1469.2 ms ✓ Libuuid_jll 1493.9 ms ✓ FriBidi_jll 1457.3 ms ✓ LERC_jll 1459.1 ms ✓ Xorg_libXau_jll 1467.8 ms ✓ Ogg_jll 1497.5 ms ✓ FFTW_jll 1467.4 ms ✓ LAME_jll 1467.8 ms ✓ Graphite2_jll 1470.8 ms ✓ x264_jll 1448.7 ms ✓ LLVMOpenMP_jll 1473.3 ms ✓ Libiconv_jll 1514.0 ms ✓ libaom_jll 1575.0 ms ✓ Xorg_libXdmcp_jll 1436.4 ms ✓ Giflib_jll 1616.5 ms ✓ Expat_jll 1435.7 ms ✓ JpegTurbo_jll 6836.7 ms ✓ Colors 3690.1 ms ✓ ColorVectorSpace 5834.8 ms ✓ QOI 1558.2 ms ✓ StructArrays 899.2 ms ✓ StructUtils → StructUtilsTablesExt 6797.0 ms ✓ StableHashTraits 809.0 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1270.5 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 1376.1 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 936.2 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 891.6 ms ✓ ADTypes → ADTypesChainRulesCoreExt 922.1 ms ✓ Distances → DistancesChainRulesCoreExt 907.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 3117.2 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 857.0 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2758.5 ms ✓ FilePathsBase → FilePathsBaseTestExt 984.0 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1391.5 ms ✓ FilePaths 1606.4 ms ✓ SortingAlgorithms 2861.6 ms ✓ QuadGK 1649.7 ms ✓ SimplePartitions 9029.6 ms ✓ BioSequences 40128.6 ms ✓ PrettyTables 21645.1 ms ✓ Automa 54287.5 ms ✓ TiffImages 1418.1 ms ✓ StaticArrays → StaticArraysStatisticsExt 1436.4 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1404.8 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1432.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1396.8 ms ✓ Adapt → AdaptStaticArraysExt 1298.9 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 35030.1 ms ✓ Polynomials 6838.5 ms ✓ JSON 995.2 ms ✓ InlineStrings → ParsersExt 5787.1 ms ✓ JLD2 → UnPackExt 1425.3 ms ✓ FreeType2_jll 893.3 ms ✓ Isoband 1878.4 ms ✓ NLopt 1396.0 ms ✓ Rmath 4617.5 ms ✓ SpecialFunctions 1134.2 ms ✓ CRlibm  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 13380.5 ms ✓ MKL_jll 1435.2 ms ✓ OpenEXR_jll 1377.2 ms ✓ Arpack 1383.9 ms ✓ libvorbis_jll 1356.8 ms ✓ Pixman_jll 1398.9 ms ✓ XML2_jll 2014.0 ms ✓ GettextRuntime_jll 1834.2 ms ✓ Xorg_libxcb_jll 1698.1 ms ✓ Libtiff_jll 1391.0 ms ✓ libsixel_jll 1289.9 ms ✓ Animations 1358.5 ms ✓ Graphics 29598.3 ms ✓ ImageCore 8421.3 ms ✓ ColorSchemes 1353.3 ms ✓ StructArrays → StructArraysSparseArraysExt 869.6 ms ✓ StructArrays → StructArraysLinearAlgebraExt 855.5 ms ✓ StructArrays → StructArraysAdaptExt 1554.5 ms ✓ StructArrays → StructArraysStaticArraysExt 1440.5 ms ✓ FiniteDiff 8907.9 ms ✓ StatsBase 88052.9 ms ✓ DataFrames 22630.4 ms ✓ FASTX 3678.6 ms ✓ NearestNeighbors 3975.1 ms ✓ Interpolations 5090.3 ms ✓ Polynomials → PolynomialsMakieCoreExt 3199.7 ms ✓ Polynomials → PolynomialsChainRulesCoreExt 3623.4 ms ✓ SimplePolynomials 4470.0 ms ✓ ColorBrewer 2572.3 ms ✓ WeakRefStrings 1772.2 ms ✓ FreeType 1677.4 ms ✓ Fontconfig_jll 3823.2 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2361.7 ms ✓ HypergeometricFunctions 1285.1 ms ✓ DiffRules 1412.3 ms ✓ ColorVectorSpace → SpecialFunctionsExt 4817.8 ms ✓ IntervalArithmetic 6628.0 ms ✓ FFTW 5746.3 ms ✓ OpenEXR 1081.3 ms ✓ LightXML 1547.0 ms ✓ Glib_jll 1423.2 ms ✓ Xorg_libX11_jll 4041.0 ms ✓ ImageBase 6744.0 ms ✓ PNGFiles 11039.2 ms ✓ Sixel 9453.9 ms ✓ JpegTurbo 17423.8 ms ✓ PlotUtils 10217.2 ms ✓ GeometryBasics 1384.0 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1556.5 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1045.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 8608.1 ms ✓ ParallelKMeans 2503.7 ms ✓ FASTX → BioSequencesExt 7670.6 ms ✓ Clustering 3302.0 ms ✓ LinearAlgebraX 24948.8 ms ✓ CSV 2731.8 ms ✓ StatsFuns 5959.3 ms ✓ ForwardDiff 1488.0 ms ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt 1442.7 ms ✓ IntervalArithmetic → IntervalArithmeticRecipesBaseExt 1351.2 ms ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt 1088.8 ms ✓ IntervalArithmetic → IntervalArithmeticDiffRulesExt 1040.5 ms ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt 3285.8 ms ✓ Polynomials → PolynomialsFFTWExt 1372.4 ms ✓ Xorg_libXrender_jll 1426.7 ms ✓ Xorg_libXext_jll 5137.4 ms ✓ ImageAxes 2573.4 ms ✓ Packing 9225.2 ms ✓ GridLayoutBase 2994.3 ms ✓ ShaderAbstractions 4553.7 ms ✓ FreeTypeAbstraction 3209.2 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 8382.5 ms ✓ StatsModels 12979.2 ms ✓ Distributions 1761.2 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1570.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 2800.1 ms ✓ Interpolations → InterpolationsForwardDiffExt 1538.6 ms ✓ IntervalArithmetic → IntervalArithmeticForwardDiffExt 7136.0 ms ✓ ExactPredicates 1551.6 ms ✓ Cairo_jll 1556.8 ms ✓ Libglvnd_jll 4038.6 ms ✓ ImageMetadata 26306.0 ms ✓ MathTeXEngine 9643.5 ms ✓ GLM 4062.4 ms ✓ Distributions → DistributionsTestExt 3680.0 ms ✓ SimpleRandom 3949.8 ms ✓ Distributions → DistributionsChainRulesCoreExt 8217.5 ms ✓ MultivariateStats 14683.3 ms ✓ GaussianMixtures 2341.8 ms ✓ NLSolversBase 1508.6 ms ✓ HarfBuzz_jll 1562.1 ms ✓ libwebp_jll 8268.7 ms ✓ Netpbm 25168.2 ms ✓ PhyloNetworks 6598.5 ms ✓ KernelDensity 4698.7 ms ✓ LineSearches 2102.6 ms ✓ libass_jll 1930.7 ms ✓ Pango_jll 8802.7 ms ✓ WebP 11871.6 ms ✓ Optim 2672.0 ms ✓ FFMPEG_jll 3254.8 ms ✓ Cairo 6718.9 ms ✓ ImageIO 9476.0 ms ✓ SimpleGraphs 12968.9 ms ✓ DelaunayTriangulation ┌ Warning: `stable_hash(x; version < 4)` is not supported in Julia 1.11 or higher. Calls should not error, but *may* silently produce different hashes. `stable_hash` is intended to be used for caching, so this likely will simply reduce the number of cache hits. Upgrade to using `stable_hash(x; version=4) to avoid this warning. └ @ StableHashTraits ~/.julia/packages/StableHashTraits/FV3wr/src/main_interface.jl:55 200465.5 ms ✓ Makie ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` Stacktrace:  [1] getproperty(x::Core.TypeName, f::Symbol)  @ Base ./Base_compiler.jl:57  [2] func2string(func::typeof(MakieCore.linesegments))  @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9  [3] plotkey(::Type{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}})  @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21  [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})  @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22  [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing)  @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255  [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol)  @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252  [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments})  @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6  [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})  @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129  [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene)  @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51  [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE})  @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311  [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat)  @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382  [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{})  @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466  [13] colorbuffer  @ ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined]  [14] colorbuffer(fig::Makie.FigureAxisPlot)  @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457  [15] top-level scope  @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6  [16] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [17] top-level scope  @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11  [18] macro expansion  @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]  [19] macro expansion  @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined]  [20] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [21] top-level scope  @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3148  [24] top-level scope  @ stdin:5  [25] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2994  [27] include_string  @ ./loading.jl:3004 [inlined]  [28] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [29] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1 in expression starting at stdin:5 3 dependencies had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ ┌ Makie │ ┌ Warning: `stable_hash(x; version < 4)` is not supported in Julia 1.11 or higher. Calls should not error, but *may* silently produce different hashes. `stable_hash` is intended to be used for caching, so this likely will simply reduce the number of cache hits. Upgrade to using `stable_hash(x; version=4) to avoid this warning. │ └ @ StableHashTraits ~/.julia/packages/StableHashTraits/FV3wr/src/main_interface.jl:55 └ ┌ Formatting │ ┌ Warning: DEPRECATION NOTICE │ │ │ │ Formatting.jl has been unmaintained for a while, with some serious │ │ correctness bugs compromising the original purpose of the package. As a result, │ │ it has been deprecated - consider using an alternative, such as │ │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly. │ │ │ │ If you are not using Formatting.jl as a direct dependency, please consider │ │ opening an issue on any packages you are using that do use it as a dependency. │ │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which │ │ package originally brings it in as a dependency. │ └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12 └ Precompilation completed after 1516.85s ################################################################################ # Loading # Loading PhyloClustering... ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` Stacktrace:  [1] getproperty(x::Core.TypeName, f::Symbol)  @ Base ./Base_compiler.jl:57  [2] func2string(func::typeof(MakieCore.linesegments))  @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9  [3] plotkey(::Type{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}})  @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21  [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})  @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22  [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing)  @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255  [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol)  @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252  [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments})  @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6  [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})  @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129  [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene)  @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51  [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE})  @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311  [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat)  @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382  [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{})  @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466  [13] colorbuffer  @ ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined]  [14] colorbuffer(fig::Makie.FigureAxisPlot)  @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457  [15] top-level scope  @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6  [16] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [17] top-level scope  @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11  [18] macro expansion  @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]  [19] macro expansion  @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined]  [20] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [21] top-level scope  @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3148  [24] top-level scope  @ stdin:5  [25] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2994  [27] include_string  @ ./loading.jl:3004 [inlined]  [28] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [29] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1 in expression starting at stdin:5 ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic` Stacktrace:  [1] getproperty(x::Core.TypeName, f::Symbol)  @ Base ./Base_compiler.jl:57  [2] func2string(func::typeof(MakieCore.linesegments))  @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9  [3] plotkey(::Type{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}})  @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21  [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})  @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22  [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing)  @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255  [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol)  @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252  [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments})  @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6  [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})  @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129  [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene)  @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51  [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE})  @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311  [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat)  @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382  [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{})  @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466  [13] colorbuffer  @ ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined]  [14] colorbuffer(fig::Makie.FigureAxisPlot)  @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457  [15] top-level scope  @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6  [16] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [17] top-level scope  @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11  [18] macro expansion  @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]  [19] macro expansion  @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined]  [20] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [21] top-level scope  @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3148  [24] top-level scope  @ stdin:5  [25] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2994  [27] include_string  @ ./loading.jl:3004 [inlined]  [28] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [29] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ CairoMakie │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: CairoMakie Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.14/CairoMakie/jl_w7OFkI" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/helper.jl:1 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3 Loading failed after 218.88s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using PhyloClustering'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:611 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:526 [3] run(::Cmd) @ Base ./process.jl:523 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [7] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 1820.61s: package fails to precompile